Wall clock time and date at job start Tue Mar 31 2020 20:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35229 * 107.86733 * 179.83656 * 11 10 9 13 13 C 1.40425 * 107.86821 * 0.42341 * 12 11 10 14 14 N 1.40072 * 125.97888 * 179.73548 * 13 12 11 15 15 C 1.34774 * 119.99931 * 0.02828 * 14 13 12 16 16 O 1.21581 * 120.00162 * 0.02562 * 15 14 13 17 17 C 1.47806 * 120.00124 * 179.97438 * 15 14 13 18 18 N 1.34574 * 126.02204 * 0.02562 * 17 15 14 19 19 C 1.30877 * 107.28696 * 180.02562 * 18 17 15 20 20 N 1.34878 * 107.59242 * 359.97438 * 19 18 17 21 21 C 1.40145 * 125.77127 * 179.97438 * 20 19 18 22 22 C 1.38856 * 120.06250 * 359.71950 * 21 20 19 23 23 C 1.38122 * 119.92509 * 179.74718 * 22 21 20 24 24 C 1.38278 * 120.06987 * 0.53110 * 23 22 21 25 25 C 1.38281 * 120.13661 * 359.74657 * 24 23 22 26 26 C 1.38118 * 120.06777 * 359.97438 * 25 24 23 27 27 N 1.28854 * 108.46349 * 359.73033 * 20 19 18 28 28 N 1.31239 * 108.04414 * 359.74232 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.08004 * 126.06548 * 0.02562 * 11 10 9 33 33 H 1.08003 * 126.06870 * 180.12983 * 12 11 10 34 34 H 0.97000 * 119.99978 * 180.02562 * 14 13 12 35 35 H 1.08003 * 126.19989 * 179.97438 * 19 18 17 36 36 H 1.07995 * 120.03473 * 0.02562 * 22 21 20 37 37 H 1.08000 * 119.96078 * 180.27748 * 23 22 21 38 38 H 1.07997 * 119.92859 * 179.76248 * 24 23 22 39 39 H 1.08002 * 119.96837 * 179.97438 * 25 24 23 40 40 H 1.07998 * 120.03612 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2625 -5.4440 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9597 -5.4621 -1.3039 15 6 5.5254 -6.6034 -0.8638 16 8 5.0869 -7.1570 0.1259 17 6 6.6782 -7.1828 -1.5849 18 7 7.2584 -6.6748 -2.6878 19 6 8.2390 -7.4769 -3.0160 20 7 8.2642 -8.4800 -2.1147 21 6 9.1662 -9.5526 -2.1076 22 6 10.1400 -9.6490 -3.0928 23 6 11.0309 -10.7045 -3.0801 24 6 10.9469 -11.6702 -2.0940 25 6 9.9746 -11.5800 -1.1149 26 6 9.0845 -10.5239 -1.1188 27 7 7.3219 -8.2829 -1.2582 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5907 -4.7507 1.7301 33 1 3.5581 -6.3463 1.0451 34 1 5.3093 -5.0206 -2.0937 35 1 8.9070 -7.3572 -3.8562 36 1 10.2034 -8.8973 -3.8655 37 1 11.7913 -10.7776 -3.8436 38 1 11.6422 -12.4965 -2.0885 39 1 9.9112 -12.3360 -0.3462 40 1 8.3256 -10.4537 -0.3536 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157188312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:27 Heat of formation + Delta-G solvation = 182.300152 kcal Electronic energy + Delta-G solvation = -26441.939695 eV Core-core repulsion = 22454.422275 eV Total energy + Delta-G solvation = -3987.517419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.08364 -40.74732 -39.87704 -39.10000 -35.14619 -34.85989 -33.64482 -32.61896 -31.53321 -31.03673 -30.02963 -29.38864 -26.66585 -25.33790 -24.54382 -23.23108 -22.63629 -21.98912 -21.33697 -20.43576 -19.74492 -19.08927 -17.48955 -17.17459 -17.13795 -16.91342 -16.42043 -15.96198 -15.47291 -15.23511 -15.00469 -14.76340 -14.32289 -14.10157 -14.00706 -13.76318 -13.54937 -13.18357 -12.75797 -12.45032 -12.35061 -12.25936 -11.84285 -11.74109 -11.48963 -11.15085 -10.90163 -10.80178 -10.50849 -10.37883 -10.24588 -10.13844 -9.80999 -9.73292 -9.09574 -8.98130 -8.55976 -8.21337 -7.53941 -6.56022 -4.29921 0.06512 0.61956 1.28546 1.59641 1.74090 2.55834 2.65435 3.04237 3.09009 3.40150 3.42136 3.49278 3.61210 3.71412 3.72122 3.93886 4.12427 4.26536 4.40245 4.44167 4.46108 4.64395 4.78238 4.91836 5.17729 5.27194 5.39352 5.48043 5.51325 5.64205 5.72051 5.78163 5.88516 5.98193 6.12907 6.29473 6.39519 6.49664 6.58562 6.76480 7.26990 7.37919 7.59044 7.72777 7.83550 8.09126 8.36425 8.53393 8.63538 9.38144 10.81639 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027965 B = 0.001835 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.000508 B =15251.913155 C =15940.881732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.315 5.315 11 C 0.053 3.947 12 C -0.284 4.284 13 C 0.260 3.740 14 N -0.607 5.607 15 C 0.623 3.377 16 O -0.492 6.492 17 C 0.161 3.839 18 N -0.473 5.473 19 C 0.201 3.799 20 N -0.252 5.252 21 C 0.128 3.872 22 C -0.121 4.121 23 C -0.097 4.097 24 C -0.114 4.114 25 C -0.099 4.099 26 C -0.101 4.101 27 N -0.246 5.246 28 N -0.294 5.294 29 H 0.267 0.733 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.422 0.578 35 H 0.231 0.769 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.186 -24.157 -6.731 34.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.097 5.097 11 C -0.097 4.097 12 C -0.316 4.316 13 C 0.007 3.993 14 N -0.256 5.256 15 C 0.403 3.597 16 O -0.361 6.361 17 C -0.119 4.119 18 N -0.197 5.197 19 C -0.094 4.094 20 N -0.041 5.041 21 C 0.037 3.963 22 C -0.141 4.141 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.121 4.121 27 N -0.083 5.083 28 N -0.125 5.125 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.187 0.813 33 H 0.180 0.820 34 H 0.259 0.741 35 H 0.247 0.753 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 22.138 -21.856 -6.423 31.765 hybrid contribution 0.686 -2.129 -0.121 2.240 sum 22.824 -23.985 -6.544 33.750 Atomic orbital electron populations 1.70852 1.06768 1.30418 1.45983 1.25921 0.96312 1.02800 0.93129 0.83419 0.74799 0.74541 0.76869 1.20548 1.21246 1.21101 1.22110 0.95431 0.90420 1.56673 0.91778 1.19787 0.86291 0.82787 0.98079 1.48829 1.23244 1.19510 1.18105 1.22559 1.00393 0.90044 0.96697 1.21544 1.02233 1.06344 1.01444 1.18957 0.91271 0.94425 0.94686 1.41910 1.29460 1.23771 1.30413 1.15949 0.80357 0.80235 0.83117 1.90787 1.60999 1.60093 1.24259 1.23567 1.00293 0.92950 0.95076 1.71392 1.08066 1.27509 1.12758 1.26612 0.99191 0.85802 0.97759 1.44596 1.21812 1.18772 1.18881 1.17673 0.91543 0.87964 0.99136 1.20883 0.94827 1.00461 0.97959 1.21043 0.98286 0.93333 0.98935 1.21394 0.98331 0.99072 0.94415 1.21179 0.94221 0.97431 0.98877 1.21129 1.00203 0.92931 0.97809 1.74376 1.00930 1.18380 1.14586 1.77397 1.03355 1.15902 1.15892 0.92285 0.93523 0.94651 0.81309 0.82042 0.74129 0.75277 0.84549 0.84419 0.84942 0.84506 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.65 55.43 0.76 -25.76 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 25.20 29.90 -169.99 -5.08 20.12 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.61 -17.30 9.24 -34.44 -0.32 -17.61 16 8 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.25 6.36 5.57 -5.19 -0.03 6.33 16 10 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 11 C 0.05 1.07 11.43 -17.24 -0.20 0.88 16 12 C -0.28 -5.80 9.60 -39.83 -0.38 -6.18 16 13 C 0.26 5.48 8.11 -154.45 -1.25 4.23 16 14 N -0.61 -10.71 5.44 -12.00 -0.07 -10.77 16 15 C 0.62 10.70 7.80 -12.35 -0.10 10.60 16 16 O -0.49 -9.51 14.21 5.29 0.08 -9.44 16 17 C 0.16 2.37 7.96 -156.30 -1.24 1.13 16 18 N -0.47 -5.87 11.09 -12.29 -0.14 -6.01 16 19 C 0.20 1.75 11.93 -90.21 -1.08 0.67 16 20 N -0.25 -2.56 3.52 -11.77 -0.04 -2.60 16 21 C 0.13 0.98 6.67 -83.60 -0.56 0.42 16 22 C -0.12 -0.55 9.45 -39.40 -0.37 -0.92 16 23 C -0.10 -0.33 10.04 -39.61 -0.40 -0.72 16 24 C -0.11 -0.41 10.04 -39.55 -0.40 -0.80 16 25 C -0.10 -0.48 10.04 -39.61 -0.40 -0.88 16 26 C -0.10 -0.75 9.61 -39.40 -0.38 -1.13 16 27 N -0.25 -3.38 11.32 32.07 0.36 -3.02 16 28 N -0.29 -7.03 12.42 31.43 0.39 -6.64 16 29 H 0.27 7.65 7.22 -40.82 -0.29 7.35 16 30 H 0.05 1.15 7.94 -51.93 -0.41 0.73 16 31 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 32 H 0.17 2.77 8.06 -52.48 -0.42 2.35 16 33 H 0.16 3.17 5.91 -52.48 -0.31 2.86 16 34 H 0.42 6.63 8.53 -40.82 -0.35 6.28 16 35 H 0.23 0.73 7.01 -52.48 -0.37 0.36 16 36 H 0.14 0.25 6.71 -52.49 -0.35 -0.10 16 37 H 0.14 0.12 8.06 -52.49 -0.42 -0.30 16 38 H 0.13 0.17 8.06 -52.49 -0.42 -0.25 16 39 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.14 1.22 7.68 -52.49 -0.40 0.82 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -36.40 358.55 -9.56 -45.96 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.80 Total: 3.92 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -7.19 Total: -3.44 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 1.04 Total: -62.52 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.40 -9.56 -45.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157188312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.260 kcal (2) G-P(sol) polarization free energy of solvation -36.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds