Wall clock time and date at job start Tue Mar 31 2020 20:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86803 * 119.99787 * 2 1 4 4 H 1.48509 * 109.46873 * 239.99814 * 3 2 1 5 5 H 1.48493 * 109.47218 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47313 * 120.00041 * 3 2 1 7 7 C 1.39888 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99903 * 175.60562 * 7 2 1 9 9 C 1.41151 * 120.00382 * 355.60052 * 7 2 1 10 10 C 1.40869 * 120.16749 * 214.76482 * 9 7 2 11 11 C 1.36377 * 119.82793 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.16771 * 0.02562 * 11 10 9 13 13 N 1.39243 * 119.83046 * 179.97438 * 12 11 10 14 14 C 1.34772 * 120.00256 * 144.74777 * 13 12 11 15 15 O 1.21584 * 120.00101 * 4.02608 * 14 13 12 16 16 N 1.34775 * 120.00274 * 184.02414 * 14 13 12 17 17 N 1.40104 * 119.99924 * 0.02562 * 16 14 13 18 18 C 1.39311 * 119.99792 * 179.97438 * 17 16 14 19 19 N 1.32974 * 125.27570 * 359.69542 * 18 17 16 20 20 C 1.32960 * 109.62329 * 179.88572 * 19 18 17 21 21 C 1.40601 * 132.75028 * 180.13187 * 20 19 18 22 22 C 1.36249 * 119.27454 * 180.28190 * 21 20 19 23 23 C 1.40206 * 119.59757 * 0.02562 * 22 21 20 24 24 C 1.35249 * 120.19964 * 359.96890 * 23 22 21 25 25 N 1.35844 * 120.58706 * 0.03233 * 24 23 22 26 26 N 1.31797 * 125.26991 * 180.02562 * 18 17 16 27 27 C 1.39479 * 120.33653 * 0.26002 * 12 11 10 28 28 C 1.36370 * 120.16417 * 359.45498 * 27 12 11 29 29 H 0.97003 * 120.00211 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.08534 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.91154 * 179.97438 * 11 10 9 32 32 H 0.97003 * 119.99921 * 324.46597 * 13 12 11 33 33 H 0.96998 * 120.00220 * 179.97438 * 16 14 13 34 34 H 0.96998 * 119.99856 * 359.97438 * 17 16 14 35 35 H 1.07996 * 120.35804 * 0.26172 * 21 20 19 36 36 H 1.08002 * 120.19989 * 179.97438 * 22 21 20 37 37 H 1.08005 * 119.90163 * 180.02562 * 23 22 21 38 38 H 1.07996 * 119.71174 * 180.02562 * 24 23 22 39 39 H 1.08000 * 119.91587 * 179.70337 * 27 12 11 40 40 H 1.08006 * 120.08822 * 180.26920 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6964 -1.2126 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6965 1.2124 7 6 2.0082 -1.2115 0.0005 8 1 3.0859 -1.2128 -0.0711 9 6 1.3057 -2.4321 0.0949 10 6 1.8647 -3.5182 0.7964 11 6 1.1801 -4.6946 0.8827 12 6 -0.0702 -4.8239 0.2782 13 7 -0.7628 -6.0284 0.3703 14 6 -2.1069 -6.0270 0.4688 15 8 -2.7202 -4.9792 0.4036 16 7 -2.7713 -7.1871 0.6395 17 7 -2.0646 -8.3945 0.7151 18 6 -2.7514 -9.5936 0.8920 19 7 -4.0707 -9.7131 1.0073 20 6 -4.3912 -10.9943 1.1616 21 6 -5.6202 -11.6580 1.3223 22 6 -5.6319 -13.0128 1.4665 23 6 -4.4220 -13.7211 1.4530 24 6 -3.2505 -13.0636 1.2970 25 7 -3.2297 -11.7130 1.1526 26 7 -2.1936 -10.7847 0.9773 27 6 -0.6275 -3.7549 -0.4232 28 6 0.0425 -2.5706 -0.5132 29 1 -0.4850 0.8400 -0.0004 30 1 2.8329 -3.4196 1.2647 31 1 1.6076 -5.5283 1.4199 32 1 -0.2781 -6.8686 0.3594 33 1 -3.7387 -7.1861 0.7107 34 1 -1.0973 -8.3955 0.6442 35 1 -6.5448 -11.1000 1.3316 36 1 -6.5675 -13.5378 1.5913 37 1 -4.4256 -14.7952 1.5665 38 1 -2.3232 -13.6171 1.2874 39 1 -1.5940 -3.8641 -0.8928 40 1 -0.3922 -1.7422 -1.0529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191983102.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:08 Heat of formation + Delta-G solvation = 157.501787 kcal Electronic energy + Delta-G solvation = -26611.777406 eV Core-core repulsion = 22623.184649 eV Total energy + Delta-G solvation = -3988.592757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.64801 -41.69862 -39.48379 -38.99127 -37.29773 -36.26867 -34.69422 -34.46044 -32.86964 -31.43007 -30.89443 -30.67161 -30.07958 -26.85752 -24.70155 -24.44045 -23.57463 -23.10438 -22.89258 -21.64654 -20.26001 -19.39827 -19.20261 -18.58490 -18.06956 -17.47858 -17.42842 -17.07007 -16.73679 -16.59855 -16.17411 -15.85241 -15.72915 -15.48138 -14.98220 -14.53448 -14.31230 -13.97393 -13.79842 -13.66880 -13.35052 -13.33157 -12.85936 -12.71272 -12.44673 -12.32228 -12.25313 -12.21779 -11.91581 -11.77390 -11.49969 -11.21835 -10.99558 -10.73711 -10.63593 -9.45498 -9.40578 -8.99359 -8.69778 -8.48408 -6.32126 -0.17360 -0.01364 0.27852 0.83801 1.13926 1.38846 1.39844 1.48930 1.52923 1.65887 1.86253 2.00290 2.24863 2.48408 2.81275 2.84030 3.24722 3.69019 3.76932 3.92888 4.16162 4.39109 4.43107 4.45377 4.48148 4.67118 4.93765 4.99961 5.06992 5.13864 5.15831 5.25568 5.28722 5.32487 5.38939 5.48300 5.62679 5.73426 5.82400 6.03156 6.05969 6.13944 6.20245 6.36157 6.71096 6.73886 6.96809 7.02154 7.15607 7.37441 8.44314 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.044604 B = 0.001776 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.601872 B =15758.630665 C =16290.442928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.022 3.978 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.066 3.934 10 C -0.207 4.207 11 C -0.105 4.105 12 C 0.032 3.968 13 N -0.651 5.651 14 C 0.708 3.292 15 O -0.600 6.600 16 N -0.507 5.507 17 N -0.492 5.492 18 C 0.501 3.499 19 N -0.617 5.617 20 C 0.284 3.716 21 C -0.138 4.138 22 C -0.028 4.028 23 C -0.143 4.143 24 C 0.098 3.902 25 N -0.286 5.286 26 N -0.400 5.400 27 C -0.107 4.107 28 C -0.166 4.166 29 H 0.282 0.718 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.409 0.591 33 H 0.441 0.559 34 H 0.446 0.554 35 H 0.166 0.834 36 H 0.194 0.806 37 H 0.207 0.793 38 H 0.193 0.807 39 H 0.098 0.902 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 -31.382 3.585 32.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.190 4.190 3 Si 0.812 3.188 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.526 4.526 8 H 0.099 0.901 9 C 0.064 3.936 10 C -0.227 4.227 11 C -0.125 4.125 12 C -0.062 4.062 13 N -0.301 5.301 14 C 0.408 3.592 15 O -0.475 6.475 16 N -0.262 5.262 17 N -0.236 5.236 18 C 0.133 3.867 19 N -0.356 5.356 20 C 0.034 3.966 21 C -0.160 4.160 22 C -0.053 4.053 23 C -0.165 4.165 24 C -0.031 4.031 25 N -0.060 5.060 26 N -0.244 5.244 27 C -0.127 4.127 28 C -0.187 4.187 29 H 0.093 0.907 30 H 0.133 0.867 31 H 0.154 0.846 32 H 0.246 0.754 33 H 0.287 0.713 34 H 0.292 0.708 35 H 0.184 0.816 36 H 0.211 0.789 37 H 0.224 0.776 38 H 0.210 0.790 39 H 0.116 0.884 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.332 -29.960 3.450 31.569 hybrid contribution 0.294 0.778 -0.086 0.836 sum -9.038 -29.183 3.363 30.735 Atomic orbital electron populations 1.69908 1.08941 1.29906 1.38661 1.26863 0.95693 1.04773 0.91661 0.85112 0.78335 0.75291 0.80048 1.18131 1.19874 1.18368 1.19745 0.95053 0.91087 1.46718 0.90069 1.18086 0.92611 0.93316 0.89629 1.20938 1.01932 0.94503 1.05291 1.20399 0.94154 0.98188 0.99734 1.17089 0.95014 0.86684 1.07406 1.41796 1.03969 1.08288 1.76014 1.15751 0.82681 0.82109 0.78704 1.91033 1.67669 1.28797 1.60015 1.44190 1.08249 0.94256 1.79552 1.41508 1.05643 0.92983 1.83494 1.20006 0.87745 0.85979 0.93003 1.70474 1.11629 1.17465 1.35985 1.22070 0.90832 0.86454 0.97261 1.20693 0.93633 0.95782 1.05894 1.21864 1.01255 0.91841 0.90383 1.21610 0.89202 1.03553 1.02159 1.22380 1.03914 0.78124 0.98656 1.47488 1.05577 1.07900 1.45022 1.78638 1.06399 0.95734 1.43645 1.20672 0.98797 0.93958 0.99261 1.21167 0.97975 0.96133 1.03396 0.90729 0.86680 0.84573 0.75356 0.71302 0.70794 0.81615 0.78864 0.77597 0.78962 0.88415 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.88 10.60 21.82 0.23 -47.65 16 2 C 0.02 1.15 5.42 85.23 0.46 1.61 16 3 Si 0.99 40.32 29.56 68.60 2.03 42.34 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.50 -27.42 9.02 23.39 0.21 -27.21 16 8 H 0.08 4.22 7.85 -2.91 -0.02 4.19 16 9 C 0.07 3.68 5.55 -21.28 -0.12 3.57 16 10 C -0.21 -9.96 9.74 22.48 0.22 -9.74 16 11 C -0.10 -4.42 9.90 22.13 0.22 -4.20 16 12 C 0.03 1.42 6.30 38.56 0.24 1.66 16 13 N -0.65 -23.15 5.26 -316.79 -1.67 -24.81 16 14 C 0.71 27.07 8.50 179.06 1.52 28.59 16 15 O -0.60 -28.88 14.62 -3.98 -0.06 -28.93 16 16 N -0.51 -15.63 6.32 -184.75 -1.17 -16.79 16 17 N -0.49 -12.88 6.45 -59.27 -0.38 -13.26 16 18 C 0.50 13.89 9.03 261.12 2.36 16.25 16 19 N -0.62 -17.14 10.75 -195.64 -2.10 -19.25 16 20 C 0.28 6.02 7.87 134.06 1.06 7.08 16 21 C -0.14 -1.54 10.11 22.38 0.23 -1.31 16 22 C -0.03 -0.06 10.07 22.28 0.22 0.16 16 23 C -0.14 -0.17 9.99 22.06 0.22 0.05 16 24 C 0.10 0.84 11.20 83.38 0.93 1.77 16 25 N -0.29 -5.60 3.89 -192.97 -0.75 -6.35 16 26 N -0.40 -10.20 12.81 -59.30 -0.76 -10.95 16 27 C -0.11 -5.61 8.61 22.13 0.19 -5.42 16 28 C -0.17 -9.53 8.62 22.48 0.19 -9.34 16 29 H 0.28 14.70 8.30 -92.71 -0.77 13.93 16 30 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 31 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 32 H 0.41 10.88 6.75 -92.71 -0.63 10.26 16 33 H 0.44 13.63 8.39 -213.32 -1.79 11.84 16 34 H 0.45 9.69 6.84 -213.32 -1.46 8.23 16 35 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 36 H 0.19 -1.18 8.06 -2.91 -0.02 -1.20 16 37 H 0.21 -1.61 8.06 -2.91 -0.02 -1.63 16 38 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 39 H 0.10 5.28 6.25 -2.91 -0.02 5.27 16 40 H 0.11 6.49 6.13 -2.91 -0.02 6.48 16 Total: -1.00 -82.87 350.36 0.81 -82.07 By element: Atomic # 1 Polarization: 42.79 SS G_CDS: -2.72 Total: 40.07 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 8.16 Total: 3.52 kcal Atomic # 7 Polarization: -132.47 SS G_CDS: -6.60 Total: -139.07 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.06 Total: -28.93 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Total: -82.87 0.81 -82.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191983102.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.569 kcal (2) G-P(sol) polarization free energy of solvation -82.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds