Wall clock time and date at job start Tue Mar 31 2020 20:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47374 * 270.00041 * 3 2 1 5 5 H 1.48496 * 109.47349 * 30.00388 * 3 2 1 6 6 H 1.48504 * 109.47003 * 150.00144 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 162.55448 * 7 2 1 9 9 N 1.36935 * 120.00405 * 342.82520 * 7 2 1 10 10 C 1.46962 * 120.59568 * 151.29568 * 9 7 2 11 11 C 1.53815 * 108.39611 * 124.76060 * 10 9 7 12 12 N 1.46958 * 108.58318 * 49.63518 * 11 10 9 13 13 C 1.34783 * 120.59366 * 124.62417 * 12 11 10 14 14 O 1.21282 * 119.99627 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00050 * 0.02562 * 13 12 11 16 16 S 1.80994 * 109.47259 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00186 * 180.02562 * 16 15 13 18 18 N 1.31543 * 126.45205 * 0.02562 * 17 16 15 19 19 N 1.28420 * 110.49751 * 180.02562 * 18 17 16 20 20 N 1.28901 * 110.34531 * 359.97438 * 19 18 17 21 21 N 1.35398 * 126.44839 * 179.71329 * 17 16 15 22 22 C 1.46493 * 127.39122 * 359.97438 * 21 17 16 23 23 C 1.52996 * 117.50407 * 188.62275 * 22 21 17 24 24 C 1.52995 * 60.00046 * 252.50847 * 23 22 21 25 25 C 1.46967 * 118.81111 * 304.64454 * 12 11 10 26 26 C 1.46972 * 120.59045 * 331.57419 * 9 7 2 27 27 H 0.96999 * 119.99847 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.60973 * 244.53779 * 10 9 7 29 29 H 1.08995 * 109.61395 * 5.04923 * 10 9 7 30 30 H 1.09002 * 109.74120 * 289.84419 * 11 10 9 31 31 H 1.09006 * 109.67017 * 169.38761 * 11 10 9 32 32 H 1.09000 * 109.47172 * 299.99774 * 15 13 12 33 33 H 1.09000 * 109.46925 * 59.99612 * 15 13 12 34 34 H 1.09008 * 115.55038 * 334.33425 * 22 21 17 35 35 H 1.09001 * 117.49586 * 0.02562 * 23 22 21 36 36 H 1.09004 * 117.50290 * 145.01742 * 23 22 21 37 37 H 1.08992 * 117.50042 * 252.50302 * 24 23 22 38 38 H 1.09009 * 117.51539 * 107.47890 * 24 23 22 39 39 H 1.08996 * 109.60899 * 295.48089 * 25 12 11 40 40 H 1.09006 * 109.74993 * 175.05419 * 25 12 11 41 41 H 1.09002 * 109.60606 * 354.94337 * 26 9 7 42 42 H 1.08999 * 109.60696 * 115.28811 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2810 9 7 1.3714 -2.3617 0.3491 10 6 1.8065 -3.6517 -0.2045 11 6 2.1101 -4.6040 0.9646 12 7 0.9732 -4.5802 1.8954 13 6 0.3438 -5.7215 2.2389 14 8 -0.5936 -5.6892 3.0077 15 6 0.8049 -7.0375 1.6677 16 16 -0.2326 -8.3724 2.3140 17 6 0.5073 -9.7530 1.5071 18 7 1.5300 -9.7193 0.6805 19 7 1.8164 -10.9023 0.2710 20 7 1.0144 -11.7645 0.7953 21 7 0.1339 -11.0491 1.6258 22 6 -0.9557 -11.5897 2.4422 23 6 -1.0558 -13.1112 2.5687 24 6 -2.0722 -12.3457 1.7191 25 6 0.5346 -3.2895 2.4448 26 6 0.2343 -2.3379 1.2801 27 1 -0.4850 0.8401 0.0004 28 1 1.0134 -4.0701 -0.8241 29 1 2.7052 -3.5079 -0.8042 30 1 3.0127 -4.2771 1.4809 31 1 2.2518 -5.6163 0.5859 32 1 0.7253 -7.0098 0.5809 33 1 1.8425 -7.2132 1.9516 34 1 -1.2330 -10.9928 3.3110 35 1 -0.3107 -13.7099 2.0449 36 1 -1.3988 -13.5155 3.5211 37 1 -3.0838 -12.2465 2.1124 38 1 -1.9961 -12.4405 0.6358 39 1 1.3249 -2.8690 3.0665 40 1 -0.3656 -3.4307 3.0431 41 1 0.0947 -1.3262 1.6610 42 1 -0.6687 -2.6620 0.7629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265761021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:12 Heat of formation + Delta-G solvation = 151.662161 kcal Electronic energy + Delta-G solvation = -26299.192860 eV Core-core repulsion = 22445.790829 eV Total energy + Delta-G solvation = -3853.402031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.127 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -43.12519 -39.80645 -38.19631 -36.96061 -34.07415 -33.45929 -32.52637 -31.36713 -31.16097 -29.39526 -26.86176 -25.69095 -23.79420 -23.69020 -23.07424 -22.88313 -21.99769 -20.80046 -19.09309 -18.40937 -17.42375 -17.26421 -16.83603 -16.30197 -15.77896 -15.64636 -15.53180 -14.87020 -14.53861 -14.12723 -13.80595 -13.74881 -13.54365 -13.35622 -13.21155 -13.16216 -12.73167 -12.47753 -12.32560 -12.22529 -11.88087 -11.55135 -11.32005 -11.22727 -11.19325 -10.98684 -10.84220 -10.81536 -10.64545 -10.34049 -10.33845 -10.05836 -9.96815 -9.69480 -8.68139 -8.44296 -8.25157 -6.78943 -5.90707 -3.36140 0.37641 0.54823 1.47842 1.63459 1.94420 2.62366 2.95033 3.21473 3.31239 3.39044 3.40787 3.65003 4.01055 4.13673 4.26871 4.37990 4.44106 4.78245 4.79829 4.95621 5.02434 5.05011 5.08077 5.19072 5.27158 5.29944 5.42312 5.62513 5.65211 5.77999 5.80111 5.99261 6.20148 6.26808 6.37902 6.59615 6.72429 7.14018 7.45192 7.62651 7.68538 8.12900 8.19909 8.30214 9.05992 9.68525 10.24620 11.16996 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.029698 B = 0.002245 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.613605 B =12467.791764 C =13019.325219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.083 3.917 12 N -0.584 5.584 13 C 0.527 3.473 14 O -0.544 6.544 15 C -0.149 4.149 16 S 0.116 5.884 17 C 0.205 3.795 18 N -0.336 5.336 19 N -0.031 5.031 20 N -0.087 5.087 21 N -0.337 5.337 22 C 0.057 3.943 23 C -0.155 4.155 24 C -0.164 4.164 25 C 0.088 3.912 26 C 0.158 3.842 27 H 0.256 0.744 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.159 0.841 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 -22.279 6.753 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.042 4.042 12 N -0.315 5.315 13 C 0.312 3.688 14 O -0.424 6.424 15 C -0.301 4.301 16 S 0.341 5.659 17 C -0.179 4.179 18 N -0.193 5.193 19 N -0.026 5.026 20 N -0.074 5.074 21 N -0.134 5.134 22 C -0.047 4.047 23 C -0.193 4.193 24 C -0.203 4.203 25 C -0.035 4.035 26 C 0.031 3.969 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.176 0.824 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.063 -22.622 7.008 23.880 hybrid contribution 0.902 1.012 -0.476 1.436 sum -2.161 -21.610 6.532 22.679 Atomic orbital electron populations 1.70014 1.05342 1.25858 1.53212 1.25095 0.95301 0.98644 1.00435 0.86275 0.79173 0.83381 0.77802 1.21298 1.21470 1.20377 1.19171 0.92754 0.84561 1.42329 0.91404 1.44024 1.36519 1.01658 1.49166 1.21368 0.98706 0.87327 0.92312 1.22618 0.88282 1.00768 0.92505 1.47982 1.32240 1.06503 1.44805 1.19395 0.83258 0.84270 0.81864 1.90708 1.28700 1.86245 1.36710 1.23942 1.04556 0.94523 1.07051 1.86444 1.37630 0.89234 1.52635 1.28252 0.97318 0.92243 1.00097 1.74981 1.13828 1.15918 1.14549 1.77850 1.15568 0.94438 1.14780 1.82419 1.01001 1.17348 1.06632 1.50928 1.25317 1.03707 1.33485 1.22245 0.88882 0.96718 0.96856 1.23418 1.02101 0.90546 1.03208 1.23544 0.95253 1.00897 1.00564 1.22615 1.00106 0.82152 0.98663 1.21213 0.89119 0.98619 0.87943 0.93383 0.95682 0.91168 0.90951 0.90593 0.85145 0.85354 0.82424 0.86736 0.86376 0.86194 0.87525 0.91717 0.89850 0.88044 0.95693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.11 11.20 55.49 0.62 -24.48 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 20.78 29.59 -169.99 -5.03 15.75 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.26 -6.67 9.57 -15.06 -0.14 -6.82 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -13.80 2.96 -171.76 -0.51 -14.31 16 10 C 0.13 2.44 6.70 -3.37 -0.02 2.42 16 11 C 0.08 1.24 6.52 -3.37 -0.02 1.22 16 12 N -0.58 -9.66 2.95 -172.21 -0.51 -10.16 16 13 C 0.53 8.17 7.72 -10.98 -0.08 8.09 16 14 O -0.54 -9.85 15.27 5.56 0.08 -9.76 16 15 C -0.15 -1.77 4.06 36.00 0.15 -1.63 16 16 S 0.12 1.29 21.10 -107.50 -2.27 -0.98 16 17 C 0.20 2.46 8.15 -89.17 -0.73 1.73 16 18 N -0.34 -4.69 11.57 30.50 0.35 -4.34 16 19 N -0.03 -0.45 13.38 60.35 0.81 0.36 16 20 N -0.09 -1.12 13.45 60.35 0.81 -0.31 16 21 N -0.34 -3.65 4.01 -54.81 -0.22 -3.87 16 22 C 0.06 0.39 6.73 -67.94 -0.46 -0.07 16 23 C -0.15 -0.76 10.22 -26.74 -0.27 -1.03 16 24 C -0.16 -0.83 10.46 -26.74 -0.28 -1.11 16 25 C 0.09 1.64 6.59 -3.59 -0.02 1.61 16 26 C 0.16 3.56 5.51 -3.59 -0.02 3.54 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.89 5.91 -51.93 -0.31 0.59 16 32 H 0.13 1.47 7.72 -51.92 -0.40 1.07 16 33 H 0.13 1.34 7.91 -51.92 -0.41 0.93 16 34 H 0.16 0.79 8.08 -51.92 -0.42 0.37 16 35 H 0.11 0.70 7.91 -51.93 -0.41 0.29 16 36 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.54 7.00 -51.93 -0.36 1.18 16 41 H 0.10 2.55 6.00 -51.93 -0.31 2.24 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -32.02 365.59 -7.88 -39.90 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.54 Total: -1.29 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -1.99 Total: 7.99 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 1.36 Total: -57.12 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.27 Total: -0.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.02 -7.88 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265761021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.563 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds