Wall clock time and date at job start Tue Mar 31 2020 20:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47374 * 270.00041 * 3 2 1 5 5 H 1.48496 * 109.47349 * 30.00388 * 3 2 1 6 6 H 1.48504 * 109.47003 * 150.00144 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 162.55448 * 7 2 1 9 9 N 1.36935 * 120.00405 * 342.82520 * 7 2 1 10 10 C 1.46962 * 120.59568 * 151.29568 * 9 7 2 11 11 C 1.53815 * 108.39611 * 124.76060 * 10 9 7 12 12 N 1.46958 * 108.58318 * 49.63518 * 11 10 9 13 13 C 1.34783 * 120.59366 * 124.62417 * 12 11 10 14 14 O 1.21282 * 119.99627 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00050 * 0.02562 * 13 12 11 16 16 S 1.80994 * 109.47259 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00186 * 180.02562 * 16 15 13 18 18 N 1.31543 * 126.45205 * 0.02562 * 17 16 15 19 19 N 1.28420 * 110.49751 * 180.02562 * 18 17 16 20 20 N 1.28901 * 110.34531 * 359.97438 * 19 18 17 21 21 N 1.35398 * 126.44839 * 179.71329 * 17 16 15 22 22 C 1.46493 * 127.39122 * 359.97438 * 21 17 16 23 23 C 1.52996 * 117.50407 * 188.62275 * 22 21 17 24 24 C 1.52995 * 60.00046 * 252.50847 * 23 22 21 25 25 C 1.46967 * 118.81111 * 304.64454 * 12 11 10 26 26 C 1.46972 * 120.59045 * 331.57419 * 9 7 2 27 27 H 0.96999 * 119.99847 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.60973 * 244.53779 * 10 9 7 29 29 H 1.08995 * 109.61395 * 5.04923 * 10 9 7 30 30 H 1.09002 * 109.74120 * 289.84419 * 11 10 9 31 31 H 1.09006 * 109.67017 * 169.38761 * 11 10 9 32 32 H 1.09000 * 109.47172 * 299.99774 * 15 13 12 33 33 H 1.09000 * 109.46925 * 59.99612 * 15 13 12 34 34 H 1.09008 * 115.55038 * 334.33425 * 22 21 17 35 35 H 1.09001 * 117.49586 * 0.02562 * 23 22 21 36 36 H 1.09004 * 117.50290 * 145.01742 * 23 22 21 37 37 H 1.08992 * 117.50042 * 252.50302 * 24 23 22 38 38 H 1.09009 * 117.51539 * 107.47890 * 24 23 22 39 39 H 1.08996 * 109.60899 * 295.48089 * 25 12 11 40 40 H 1.09006 * 109.74993 * 175.05419 * 25 12 11 41 41 H 1.09002 * 109.60606 * 354.94337 * 26 9 7 42 42 H 1.08999 * 109.60696 * 115.28811 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2810 9 7 1.3714 -2.3617 0.3491 10 6 1.8065 -3.6517 -0.2045 11 6 2.1101 -4.6040 0.9646 12 7 0.9732 -4.5802 1.8954 13 6 0.3438 -5.7215 2.2389 14 8 -0.5936 -5.6892 3.0077 15 6 0.8049 -7.0375 1.6677 16 16 -0.2326 -8.3724 2.3140 17 6 0.5073 -9.7530 1.5071 18 7 1.5300 -9.7193 0.6805 19 7 1.8164 -10.9023 0.2710 20 7 1.0144 -11.7645 0.7953 21 7 0.1339 -11.0491 1.6258 22 6 -0.9557 -11.5897 2.4422 23 6 -1.0558 -13.1112 2.5687 24 6 -2.0722 -12.3457 1.7191 25 6 0.5346 -3.2895 2.4448 26 6 0.2343 -2.3379 1.2801 27 1 -0.4850 0.8401 0.0004 28 1 1.0134 -4.0701 -0.8241 29 1 2.7052 -3.5079 -0.8042 30 1 3.0127 -4.2771 1.4809 31 1 2.2518 -5.6163 0.5859 32 1 0.7253 -7.0098 0.5809 33 1 1.8425 -7.2132 1.9516 34 1 -1.2330 -10.9928 3.3110 35 1 -0.3107 -13.7099 2.0449 36 1 -1.3988 -13.5155 3.5211 37 1 -3.0838 -12.2465 2.1124 38 1 -1.9961 -12.4405 0.6358 39 1 1.3249 -2.8690 3.0665 40 1 -0.3656 -3.4307 3.0431 41 1 0.0947 -1.3262 1.6610 42 1 -0.6687 -2.6620 0.7629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265761021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:10 Heat of formation + Delta-G solvation = 131.468137 kcal Electronic energy + Delta-G solvation = -26300.068538 eV Core-core repulsion = 22445.790829 eV Total energy + Delta-G solvation = -3854.277710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.127 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -44.04462 -41.13846 -38.72499 -38.49930 -35.71667 -34.25028 -33.50073 -33.11364 -32.56874 -30.70738 -28.52019 -26.52748 -25.46210 -24.60334 -24.40981 -23.48064 -22.79007 -22.27443 -20.38507 -19.44022 -18.76606 -18.11100 -17.92469 -17.72037 -16.92787 -16.85425 -16.65441 -16.21005 -15.63374 -15.48419 -15.19816 -15.04083 -14.82040 -14.62301 -14.59310 -14.20805 -13.64990 -13.55859 -13.39636 -13.24335 -13.12815 -12.66619 -12.60772 -12.47820 -12.41095 -12.31303 -12.11159 -12.01746 -11.93433 -11.81839 -11.70355 -11.68411 -11.06686 -10.98602 -10.60274 -9.91632 -9.13629 -8.66169 -7.88444 -5.36541 -0.52433 -0.33335 0.55616 0.90231 0.96581 1.39224 1.48862 1.51077 1.59868 1.95393 2.48810 2.51597 3.03782 3.21010 3.27224 3.44671 3.60287 3.63559 3.73342 3.87361 4.04023 4.15930 4.20264 4.22716 4.28725 4.40138 4.45848 4.52847 4.63597 4.66330 4.79358 4.84528 4.89731 5.06184 5.06271 5.12484 5.24805 5.43333 5.60401 5.66698 6.34196 6.36192 6.92478 7.10629 7.17590 7.79917 8.32256 9.16911 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.029698 B = 0.002245 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.613605 B =12467.791764 C =13019.325219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.261 4.261 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.124 3.876 11 C 0.094 3.906 12 N -0.591 5.591 13 C 0.531 3.469 14 O -0.571 6.571 15 C -0.149 4.149 16 S 0.138 5.862 17 C 0.199 3.801 18 N -0.353 5.353 19 N -0.057 5.057 20 N -0.095 5.095 21 N -0.327 5.327 22 C 0.026 3.974 23 C -0.143 4.143 24 C -0.155 4.155 25 C 0.104 3.896 26 C 0.168 3.832 27 H 0.250 0.750 28 H 0.018 0.982 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.179 0.821 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.070 0.930 42 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 -24.154 7.703 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.391 4.391 8 H 0.092 0.908 9 N -0.333 5.333 10 C -0.002 4.002 11 C -0.029 4.029 12 N -0.322 5.322 13 C 0.317 3.683 14 O -0.452 6.452 15 C -0.300 4.300 16 S 0.363 5.637 17 C -0.185 4.185 18 N -0.210 5.210 19 N -0.053 5.053 20 N -0.082 5.082 21 N -0.125 5.125 22 C -0.076 4.076 23 C -0.180 4.180 24 C -0.193 4.193 25 C -0.020 4.020 26 C 0.041 3.959 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.196 0.804 35 H 0.118 0.882 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges -2.398 -24.554 7.957 25.922 hybrid contribution 0.615 1.475 -0.768 1.773 sum -1.784 -23.079 7.189 24.238 Atomic orbital electron populations 1.70170 1.06780 1.26001 1.55233 1.25831 0.95958 1.01669 1.01142 0.85287 0.78174 0.79555 0.77459 1.21368 1.22203 1.19232 1.19536 0.93161 0.85595 1.40796 0.90762 1.44282 1.36383 1.02775 1.49846 1.21576 0.98653 0.86036 0.93966 1.22580 0.87797 1.01868 0.90672 1.47994 1.32882 1.06044 1.45273 1.19849 0.82327 0.84982 0.81103 1.90700 1.29793 1.86820 1.37898 1.23893 1.05881 0.92721 1.07481 1.86443 1.36948 0.88238 1.52072 1.28317 0.97205 0.92912 1.00047 1.74873 1.14773 1.16079 1.15291 1.77826 1.16626 0.94869 1.15936 1.82335 1.01271 1.17609 1.07028 1.51184 1.25255 1.03287 1.32754 1.22869 0.88770 0.98371 0.97616 1.23533 1.01321 0.88851 1.04323 1.23641 0.96173 0.99715 0.99799 1.22181 1.00385 0.82656 0.96749 1.20921 0.88164 0.97928 0.88897 0.94052 0.96435 0.90203 0.89947 0.86564 0.84054 0.83169 0.80443 0.88159 0.83444 0.83533 0.89069 0.91089 0.89964 0.91137 0.98708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.87 11.20 21.65 0.24 -53.62 16 2 C -0.05 -2.71 4.91 84.86 0.42 -2.29 16 3 Si 0.97 43.20 29.59 68.60 2.03 45.23 16 4 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.26 -13.45 9.57 84.03 0.80 -12.65 16 8 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 9 N -0.61 -28.52 2.96 -697.33 -2.06 -30.59 16 10 C 0.12 4.48 6.70 86.57 0.58 5.06 16 11 C 0.09 2.57 6.52 86.57 0.56 3.14 16 12 N -0.59 -18.51 2.95 -817.13 -2.41 -20.92 16 13 C 0.53 15.36 7.72 87.65 0.68 16.04 16 14 O -0.57 -19.86 15.27 -3.04 -0.05 -19.90 16 15 C -0.15 -3.12 4.06 71.23 0.29 -2.83 16 16 S 0.14 2.76 21.10 -56.49 -1.19 1.56 16 17 C 0.20 4.41 8.15 179.84 1.47 5.88 16 18 N -0.35 -9.33 11.57 -57.41 -0.66 -9.99 16 19 N -0.06 -1.63 13.38 37.02 0.50 -1.13 16 20 N -0.10 -2.38 13.45 37.02 0.50 -1.88 16 21 N -0.33 -6.58 4.01 -327.31 -1.31 -7.89 16 22 C 0.03 0.30 6.73 44.99 0.30 0.60 16 23 C -0.14 -1.04 10.22 30.59 0.31 -0.73 16 24 C -0.15 -1.21 10.46 30.59 0.32 -0.89 16 25 C 0.10 3.87 6.59 86.42 0.57 4.44 16 26 C 0.17 7.79 5.51 86.41 0.48 8.27 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 2.71 7.93 -2.39 -0.02 2.69 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.12 2.26 5.91 -2.38 -0.01 2.25 16 32 H 0.14 2.75 7.72 -2.40 -0.02 2.73 16 33 H 0.15 2.57 7.91 -2.39 -0.02 2.55 16 34 H 0.18 1.26 8.08 -2.38 -0.02 1.24 16 35 H 0.10 1.07 7.91 -2.39 -0.02 1.06 16 36 H 0.15 0.21 8.14 -2.38 -0.02 0.19 16 37 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.08 3.05 7.00 -2.38 -0.02 3.04 16 41 H 0.07 3.71 6.00 -2.39 -0.01 3.69 16 42 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 Total: -1.00 -71.14 365.59 3.41 -67.73 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.05 Total: 7.36 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 6.78 Total: 24.04 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -5.21 Total: -126.02 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.19 Total: 1.56 kcal Total: -71.14 3.41 -67.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265761021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.203 kcal (2) G-P(sol) polarization free energy of solvation -71.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds