Wall clock time and date at job start Tue Mar 31 2020 20:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 120.00076 * 2 1 4 4 H 1.48498 * 109.47545 * 275.37478 * 3 2 1 5 5 H 1.48502 * 109.47422 * 35.37741 * 3 2 1 6 6 H 1.48510 * 109.46896 * 155.37343 * 3 2 1 7 7 C 1.38813 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00281 * 35.23295 * 7 2 1 9 9 N 1.36934 * 119.99626 * 215.24116 * 7 2 1 10 10 C 1.46976 * 120.58974 * 207.36176 * 9 7 2 11 11 C 1.53368 * 108.62962 * 235.24444 * 10 9 7 12 12 N 1.46960 * 108.63802 * 310.57400 * 11 10 9 13 13 C 1.34783 * 120.59630 * 235.20490 * 12 11 10 14 14 O 1.21277 * 119.99725 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00080 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.46871 * 180.02562 * 15 13 12 17 17 S 1.81399 * 109.46914 * 179.97438 * 16 15 13 18 18 C 1.76198 * 103.00289 * 179.97438 * 17 16 15 19 19 C 1.38902 * 120.08198 * 0.02562 * 18 17 16 20 20 C 1.38126 * 119.94342 * 180.02562 * 19 18 17 21 21 C 1.38294 * 120.11703 * 359.97438 * 20 19 18 22 22 C 1.38306 * 120.17184 * 0.03085 * 21 20 19 23 23 C 1.38261 * 120.05187 * 359.67099 * 22 21 20 24 24 F 1.35105 * 120.05426 * 180.29896 * 23 22 21 25 25 C 1.46961 * 118.81103 * 55.48339 * 12 11 10 26 26 C 1.46960 * 120.59849 * 27.37959 * 9 7 2 27 27 H 0.97005 * 119.99593 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.60883 * 115.50443 * 10 9 7 29 29 H 1.09001 * 109.75104 * 355.07262 * 10 9 7 30 30 H 1.09005 * 109.60342 * 190.83025 * 11 10 9 31 31 H 1.08995 * 109.75119 * 70.40860 * 11 10 9 32 32 H 1.09002 * 109.47005 * 300.00159 * 15 13 12 33 33 H 1.08996 * 109.46892 * 59.99781 * 15 13 12 34 34 H 1.09002 * 109.47153 * 299.99722 * 16 15 13 35 35 H 1.08997 * 109.47353 * 60.00252 * 16 15 13 36 36 H 1.07998 * 120.02541 * 359.97438 * 19 18 17 37 37 H 1.08001 * 119.94577 * 179.97438 * 20 19 18 38 38 H 1.07997 * 119.91324 * 179.97438 * 21 20 19 39 39 H 1.07995 * 119.97211 * 179.97438 * 22 21 20 40 40 H 1.08996 * 109.61367 * 64.26521 * 25 12 11 41 41 H 1.08998 * 109.60958 * 184.77930 * 25 12 11 42 42 H 1.09003 * 109.60938 * 244.49670 * 26 9 7 43 43 H 1.08997 * 109.60782 * 4.83593 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3842 2.1120 -1.3939 5 1 1.5092 2.6172 0.8106 6 1 3.6000 1.4099 0.5835 7 6 2.0102 -1.2022 -0.0005 8 1 1.6186 -2.0516 -0.5405 9 7 3.1913 -1.3112 0.6837 10 6 4.2162 -2.2748 0.2580 11 6 4.5601 -3.1813 1.4463 12 7 4.8255 -2.3372 2.6196 13 6 5.9877 -2.4451 3.2936 14 8 6.8259 -3.2439 2.9329 15 6 6.2455 -1.5732 4.4954 16 6 7.6268 -1.8930 5.0705 17 16 7.9375 -0.8429 6.5166 18 6 9.5451 -1.3458 7.0337 19 6 10.2225 -2.3374 6.3357 20 6 11.4824 -2.7298 6.7438 21 6 12.0708 -2.1368 7.8459 22 6 11.4006 -1.1490 8.5445 23 6 10.1418 -0.7465 8.1384 24 9 9.4896 0.2226 8.8172 25 6 3.7984 -1.3777 3.0487 26 6 3.4567 -0.4671 1.8571 27 1 -0.4850 0.8401 0.0004 28 1 5.1095 -1.7400 -0.0647 29 1 3.8344 -2.8792 -0.5648 30 1 5.4463 -3.7711 1.2119 31 1 3.7229 -3.8469 1.6562 32 1 6.2098 -0.5251 4.1983 33 1 5.4839 -1.7626 5.2518 34 1 7.6630 -2.9411 5.3675 35 1 8.3882 -1.7032 4.3139 36 1 9.7641 -2.8018 5.4751 37 1 12.0089 -3.5011 6.2014 38 1 13.0559 -2.4464 8.1624 39 1 11.8630 -0.6884 9.4049 40 1 2.9062 -1.9156 3.3690 41 1 4.1814 -0.7759 3.8728 42 1 4.2960 0.1964 1.6482 43 1 2.5715 0.1250 2.0895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265798344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:38 Heat of formation + Delta-G solvation = -34.315479 kcal Electronic energy + Delta-G solvation = -26001.198404 eV Core-core repulsion = 22087.519065 eV Total energy + Delta-G solvation = -3913.679340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.97511 -41.18676 -39.77069 -38.67038 -35.64754 -34.36350 -33.44760 -32.36656 -32.02859 -31.41087 -29.01158 -26.47434 -24.96130 -24.64548 -24.16951 -23.44820 -22.11737 -20.19965 -19.05749 -18.95645 -18.14860 -17.81605 -17.36001 -17.22778 -17.00560 -16.72660 -16.61615 -16.10370 -16.00886 -15.56913 -15.21420 -15.14703 -15.09331 -14.68184 -14.33605 -14.17391 -14.03131 -13.99620 -13.66892 -13.56425 -13.18416 -12.99345 -12.76729 -12.59841 -12.47830 -12.24128 -12.13983 -12.09845 -11.88164 -11.38933 -11.31671 -10.89754 -10.86966 -10.68558 -9.90893 -9.88458 -8.87607 -8.53253 -8.22881 -5.41813 -0.00771 0.12656 0.25883 1.23359 1.35783 1.48279 1.53001 1.55510 2.00619 2.44499 2.50647 2.94766 3.15722 3.37371 3.50088 3.57739 3.70601 3.79663 3.97935 4.10963 4.14811 4.22739 4.29548 4.34301 4.39392 4.42880 4.52158 4.60969 4.61885 4.68069 4.73051 4.78292 4.87514 4.90809 5.00680 5.00767 5.18306 5.19973 5.37771 5.47205 5.80746 5.85223 6.10582 6.41682 6.89667 7.07667 7.61471 8.03565 8.95143 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021432 B = 0.002289 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.121953 B =12231.347249 C =13074.138918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.900 3.100 4 H -0.306 1.306 5 H -0.294 1.294 6 H -0.231 1.231 7 C -0.263 4.263 8 H 0.050 0.950 9 N -0.613 5.613 10 C 0.132 3.868 11 C 0.105 3.895 12 N -0.602 5.602 13 C 0.520 3.480 14 O -0.581 6.581 15 C -0.121 4.121 16 C -0.080 4.080 17 S -0.112 6.112 18 C -0.139 4.139 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.091 4.091 22 C -0.137 4.137 23 C 0.085 3.915 24 F -0.144 7.144 25 C 0.095 3.905 26 C 0.123 3.877 27 H 0.263 0.737 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.159 0.841 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.040 0.960 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.105 -4.150 18.069 30.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.211 4.211 3 Si 0.727 3.273 4 H -0.235 1.235 5 H -0.221 1.221 6 H -0.155 1.155 7 C -0.392 4.392 8 H 0.068 0.932 9 N -0.337 5.337 10 C 0.006 3.994 11 C -0.019 4.019 12 N -0.334 5.334 13 C 0.308 3.692 14 O -0.462 6.462 15 C -0.162 4.162 16 C -0.229 4.229 17 S 0.133 5.867 18 C -0.253 4.253 19 C -0.141 4.141 20 C -0.128 4.128 21 C -0.111 4.111 22 C -0.157 4.157 23 C 0.059 3.941 24 F -0.123 7.123 25 C -0.029 4.029 26 C -0.003 4.003 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.156 0.844 37 H 0.177 0.823 38 H 0.187 0.813 39 H 0.178 0.822 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.057 0.943 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.508 -3.608 18.304 30.012 hybrid contribution 0.154 0.282 -1.072 1.119 sum 23.662 -3.326 17.233 29.461 Atomic orbital electron populations 1.70169 1.07723 1.27520 1.51850 1.25746 0.95296 1.00410 0.99619 0.86607 0.81883 0.81627 0.77164 1.23487 1.22060 1.15455 1.18688 0.95829 0.95464 1.29223 0.93236 1.44392 1.16164 1.43880 1.29299 1.21424 0.91019 0.91512 0.95422 1.22005 1.01336 0.93011 0.85561 1.48077 1.16871 1.39017 1.29387 1.20777 0.80611 0.83328 0.84475 1.90647 1.45688 1.39996 1.69862 1.21377 0.97213 1.01626 0.95969 1.23311 1.00386 1.02098 0.97077 1.85637 1.14552 1.51516 1.35020 1.22000 0.99847 1.03168 1.00276 1.21356 0.96549 0.96184 1.00028 1.21552 0.94046 1.00088 0.97073 1.21506 1.01144 0.94306 0.94141 1.21438 0.92306 0.99551 1.02389 1.17492 0.93159 0.90606 0.92810 1.91486 1.81282 1.60749 1.78737 1.22521 0.91229 0.91458 0.97729 1.21904 0.99004 0.92735 0.86670 0.92816 0.95213 0.90897 0.88955 0.91587 0.86363 0.85781 0.88508 0.88850 0.84448 0.82336 0.81286 0.82218 0.90963 0.86449 0.94255 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.97 21.65 0.30 -55.14 16 2 C -0.01 -0.71 4.85 84.86 0.41 -0.30 16 3 Si 0.90 42.25 26.43 68.60 1.81 44.06 16 4 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.23 -9.78 4.83 99.48 0.48 -9.30 16 7 C -0.26 -14.07 9.86 84.03 0.83 -13.24 16 8 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 9 N -0.61 -26.88 2.70 -697.33 -1.88 -28.76 16 10 C 0.13 4.87 6.67 86.41 0.58 5.44 16 11 C 0.10 3.34 6.59 86.42 0.57 3.91 16 12 N -0.60 -17.70 2.94 -817.18 -2.40 -20.10 16 13 C 0.52 14.12 7.70 87.66 0.67 14.80 16 14 O -0.58 -18.94 15.39 -3.02 -0.05 -18.99 16 15 C -0.12 -2.35 4.05 29.85 0.12 -2.23 16 16 C -0.08 -1.55 3.62 71.98 0.26 -1.29 16 17 S -0.11 -2.35 21.53 -56.49 -1.22 -3.56 16 18 C -0.14 -2.84 6.11 22.64 0.14 -2.70 16 19 C -0.12 -1.96 9.36 22.40 0.21 -1.75 16 20 C -0.11 -1.25 10.04 22.26 0.22 -1.03 16 21 C -0.09 -0.88 10.04 22.30 0.22 -0.65 16 22 C -0.14 -1.83 10.02 22.29 0.22 -1.61 16 23 C 0.08 1.68 7.28 22.49 0.16 1.85 16 24 F -0.14 -3.32 16.76 44.97 0.75 -2.56 16 25 C 0.09 2.69 6.53 86.57 0.57 3.26 16 26 C 0.12 4.61 4.54 86.57 0.39 5.00 16 27 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 28 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 2.68 7.94 -2.39 -0.02 2.66 16 30 H 0.09 2.83 6.99 -2.38 -0.02 2.81 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 32 H 0.12 2.05 7.73 -2.39 -0.02 2.04 16 33 H 0.12 1.97 7.90 -2.39 -0.02 1.96 16 34 H 0.10 1.89 7.70 -2.39 -0.02 1.87 16 35 H 0.09 1.89 7.71 -2.39 -0.02 1.88 16 36 H 0.14 2.19 5.88 -2.91 -0.02 2.18 16 37 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 38 H 0.17 0.46 8.06 -2.91 -0.02 0.43 16 39 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.12 2.39 5.91 -2.39 -0.01 2.38 16 42 H 0.04 1.45 6.69 -2.39 -0.02 1.44 16 43 H 0.06 2.55 5.58 -2.39 -0.01 2.54 16 Total: -1.00 -69.13 361.02 3.71 -65.42 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.80 Total: 10.18 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 5.58 Total: 9.46 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -3.98 Total: -104.00 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.05 Total: -18.99 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.75 Total: -2.56 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.81 Total: 44.06 kcal Atomic # 16 Polarization: -2.35 SS G_CDS: -1.22 Total: -3.56 kcal Total: -69.13 3.71 -65.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265798344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.103 kcal (2) G-P(sol) polarization free energy of solvation -69.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds