Wall clock time and date at job start Tue Mar 31 2020 20:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99912 * 2 1 4 4 H 1.48507 * 109.47058 * 239.99549 * 3 2 1 5 5 H 1.48502 * 109.47460 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47561 * 120.00028 * 3 2 1 7 7 C 1.37874 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00480 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46988 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.46718 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99972 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99649 * 5.07754 * 12 11 10 14 14 N 1.34778 * 120.00074 * 185.07967 * 12 11 10 15 15 C 1.47073 * 120.87679 * 175.00157 * 14 12 11 16 16 C 1.53244 * 108.51975 * 231.16031 * 15 14 12 17 17 N 1.46899 * 109.34199 * 306.17411 * 16 15 14 18 18 C 1.39062 * 111.00036 * 187.25264 * 17 16 15 19 19 C 1.39126 * 119.69142 * 180.02562 * 18 17 16 20 20 C 1.38299 * 119.10977 * 179.97438 * 19 18 17 21 21 C 1.38977 * 118.49842 * 0.02562 * 20 19 18 22 22 Cl 1.73594 * 120.35091 * 180.02562 * 21 20 19 23 23 C 1.38129 * 119.29791 * 359.97438 * 21 20 19 24 24 N 1.31978 * 120.84132 * 0.02562 * 23 21 20 25 25 C 1.46898 * 111.26781 * 63.10279 * 17 16 15 26 26 C 1.47080 * 120.88217 * 354.98112 * 14 12 11 27 27 H 0.96994 * 120.00248 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46959 * 60.00184 * 9 7 2 29 29 H 1.08999 * 109.47261 * 299.99916 * 9 7 2 30 30 H 1.08994 * 109.46714 * 59.99997 * 10 9 7 31 31 H 1.08999 * 109.46737 * 299.99853 * 10 9 7 32 32 H 0.97001 * 120.00656 * 359.97438 * 11 10 9 33 33 H 1.09005 * 109.63108 * 111.45594 * 15 14 12 34 34 H 1.09000 * 109.63339 * 350.87083 * 15 14 12 35 35 H 1.09002 * 109.49338 * 186.21059 * 16 15 14 36 36 H 1.09002 * 109.48923 * 66.13453 * 16 15 14 37 37 H 1.07991 * 120.44571 * 0.02562 * 19 18 17 38 38 H 1.08004 * 120.75562 * 180.27400 * 20 19 18 39 39 H 1.08002 * 119.57495 * 179.97438 * 23 21 20 40 40 H 1.09000 * 109.49637 * 56.85421 * 25 17 16 41 41 H 1.08995 * 109.49137 * 176.93716 * 25 17 16 42 42 H 1.08997 * 109.62193 * 248.54729 * 26 14 12 43 43 H 1.08996 * 109.62611 * 9.12551 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5128 -4.9308 0.0033 12 6 2.1867 -6.0980 0.0047 13 8 3.3989 -6.1000 0.0988 14 7 1.5168 -7.2630 -0.0982 15 6 2.2370 -8.5406 -0.2083 16 6 1.6828 -9.3095 -1.4125 17 7 0.2242 -9.4276 -1.2850 18 6 -0.2968 -10.2571 -2.2721 19 6 -1.6667 -10.4952 -2.3198 20 6 -2.1720 -11.3217 -3.3069 21 6 -1.2861 -11.8857 -4.2172 22 17 -1.8683 -12.9298 -5.4759 23 6 0.0623 -11.6058 -4.1103 24 7 0.5153 -10.8130 -3.1575 25 6 -0.4216 -8.1084 -1.3111 26 6 0.0462 -7.2904 -0.1028 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8920 30 1 2.8719 -3.6035 0.8926 31 1 2.8719 -3.6051 -0.8873 32 1 0.5428 -4.9308 0.0033 33 1 2.0872 -9.1249 0.6996 34 1 3.3004 -8.3502 -0.3533 35 1 2.1270 -10.3044 -1.4445 36 1 1.9255 -8.7727 -2.3297 37 1 -2.3268 -10.0400 -1.5964 38 1 -3.2315 -11.5211 -3.3714 39 1 0.7547 -12.0420 -4.8151 40 1 -0.1496 -7.5884 -2.2296 41 1 -1.5037 -8.2323 -1.2695 42 1 -0.3141 -7.7545 0.8153 43 1 -0.3386 -6.2734 -0.1779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273025950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:15 Heat of formation + Delta-G solvation = 1.655152 kcal Electronic energy + Delta-G solvation = -26072.318424 eV Core-core repulsion = 22178.075144 eV Total energy + Delta-G solvation = -3894.243281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.01597 -41.14795 -39.10314 -37.55254 -36.66103 -35.76819 -34.81394 -33.69254 -32.42866 -31.55270 -30.92548 -28.11675 -26.58289 -25.62133 -24.07894 -23.79580 -23.01040 -22.31484 -20.65547 -19.57676 -18.53714 -18.33500 -17.86933 -17.33824 -17.10696 -16.83517 -16.49701 -16.31010 -15.80245 -15.56407 -15.47407 -15.30818 -14.98183 -14.85134 -14.32777 -14.26611 -14.04829 -13.60482 -13.46477 -13.16558 -12.98295 -12.91370 -12.63394 -12.53010 -12.49503 -12.34213 -12.22690 -12.18730 -11.66666 -11.47469 -11.17574 -11.00516 -10.86833 -10.60748 -10.59093 -10.19894 -9.56366 -9.14356 -8.23123 -6.33003 -0.12728 0.14346 1.06554 1.42467 1.44793 1.51747 1.57808 2.07383 2.29687 2.41523 2.66510 2.94666 3.11658 3.29756 3.68397 3.76572 3.80516 3.92065 3.96622 4.11188 4.12902 4.26412 4.42497 4.48373 4.52045 4.55559 4.61071 4.71422 4.77275 4.83166 4.86863 4.91189 4.96710 5.22461 5.29126 5.38388 5.50637 5.54584 5.60012 5.77761 5.85377 5.99173 6.18050 6.79377 6.80184 6.94844 7.35934 7.51855 8.88441 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.001910 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.771748 B =14655.720045 C =15431.288496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.159 3.841 11 N -0.733 5.733 12 C 0.701 3.299 13 O -0.636 6.636 14 N -0.632 5.632 15 C 0.134 3.866 16 C 0.066 3.934 17 N -0.471 5.471 18 C 0.300 3.700 19 C -0.169 4.169 20 C -0.041 4.041 21 C -0.123 4.123 22 Cl -0.056 7.056 23 C 0.132 3.868 24 N -0.530 5.530 25 C 0.048 3.952 26 C 0.112 3.888 27 H 0.266 0.734 28 H 0.009 0.991 29 H 0.010 0.990 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.405 0.595 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.036 0.964 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.175 0.825 40 H 0.040 0.960 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.063 -27.651 -6.507 29.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.012 4.012 10 C 0.035 3.965 11 N -0.390 5.390 12 C 0.403 3.597 13 O -0.518 6.518 14 N -0.370 5.370 15 C 0.011 3.989 16 C -0.062 4.062 17 N -0.188 5.188 18 C 0.069 3.931 19 C -0.191 4.191 20 C -0.067 4.067 21 C -0.153 4.153 22 Cl -0.027 7.027 23 C -0.026 4.026 24 N -0.245 5.245 25 C -0.078 4.078 26 C -0.011 4.011 27 H 0.075 0.925 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.243 0.757 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.054 0.946 37 H 0.190 0.810 38 H 0.189 0.811 39 H 0.192 0.808 40 H 0.059 0.941 41 H 0.148 0.852 42 H 0.120 0.880 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.572 -27.577 -5.994 29.219 hybrid contribution -0.597 0.965 -0.899 1.448 sum -8.169 -26.612 -6.893 28.679 Atomic orbital electron populations 1.70037 1.07413 1.28037 1.50908 1.25840 0.95825 1.02967 0.94448 0.85522 0.78329 0.78261 0.79073 1.19460 1.20548 1.19416 1.21427 0.93583 0.91923 1.51631 0.92390 1.19113 0.94172 0.91490 0.96412 1.21093 0.94704 0.81135 0.99552 1.45375 1.10376 1.04402 1.78813 1.16059 0.84854 0.81154 0.77665 1.90852 1.14050 1.86886 1.60041 1.47395 1.07432 1.04684 1.77483 1.21648 0.96868 0.81864 0.98518 1.22262 0.85724 1.01567 0.96634 1.59135 1.06622 1.12594 1.40440 1.20202 0.90926 0.94085 0.87936 1.21839 0.93998 1.01891 1.01366 1.21724 1.01540 0.92379 0.91046 1.22001 0.95381 1.01669 0.96289 1.98384 1.88622 1.64924 1.50769 1.22764 0.92742 0.92606 0.94501 1.67738 1.39764 1.12606 1.04384 1.22772 1.01445 0.85724 0.97890 1.21992 0.78204 1.01408 0.99497 0.92531 0.97223 0.97154 0.93835 0.93984 0.75696 0.89399 0.89930 0.87882 0.94557 0.81036 0.81069 0.80779 0.94145 0.85167 0.87973 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.48 13.29 21.45 0.28 -53.20 16 2 C 0.01 0.45 5.46 84.65 0.46 0.92 16 3 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.28 5.09 29.85 0.15 1.43 16 10 C 0.16 6.96 5.62 86.38 0.49 7.44 16 11 N -0.73 -25.92 5.47 -478.54 -2.62 -28.54 16 12 C 0.70 24.83 8.31 179.05 1.49 26.31 16 13 O -0.64 -28.00 15.83 -3.99 -0.06 -28.07 16 14 N -0.63 -16.15 3.01 -835.94 -2.52 -18.66 16 15 C 0.13 3.04 6.58 86.35 0.57 3.60 16 16 C 0.07 1.33 4.82 86.39 0.42 1.75 16 17 N -0.47 -7.92 4.65 -700.91 -3.26 -11.19 16 18 C 0.30 5.04 6.41 133.05 0.85 5.89 16 19 C -0.17 -1.92 9.17 22.50 0.21 -1.71 16 20 C -0.04 -0.42 9.97 22.46 0.22 -0.20 16 21 C -0.12 -1.62 6.34 22.42 0.14 -1.48 16 22 Cl -0.06 -0.68 28.98 -2.72 -0.08 -0.75 16 23 C 0.13 2.04 10.97 84.64 0.93 2.97 16 24 N -0.53 -10.12 8.67 -193.15 -1.67 -11.80 16 25 C 0.05 0.70 5.41 86.38 0.47 1.17 16 26 C 0.11 1.90 6.59 86.35 0.57 2.47 16 27 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.40 11.98 5.97 -92.71 -0.55 11.43 16 33 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.08 2.22 7.10 -2.39 -0.02 2.20 16 35 H 0.10 2.00 7.65 -2.39 -0.02 1.98 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.17 1.03 7.13 -2.91 -0.02 1.01 16 38 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 39 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 40 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.13 1.05 6.62 -2.39 -0.02 1.04 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.10 1.57 5.63 -2.39 -0.01 1.56 16 Total: -1.00 -71.42 368.01 -0.22 -71.64 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.49 Total: 14.78 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 7.20 Total: 20.35 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -9.78 Total: -123.38 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.06 Total: -28.07 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.75 kcal Total: -71.42 -0.22 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273025950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.292 kcal (2) G-P(sol) polarization free energy of solvation -71.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds