Wall clock time and date at job start Tue Mar 31 2020 20:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48502 * 109.47375 * 270.00386 * 3 2 1 5 5 H 1.48502 * 109.46941 * 30.00474 * 3 2 1 6 6 H 1.48501 * 109.46929 * 150.00483 * 3 2 1 7 7 C 1.38796 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00104 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99826 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99847 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46971 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00341 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99663 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99644 * 180.02562 * 13 11 10 15 15 C 1.50704 * 109.47044 * 180.02562 * 14 13 11 16 16 C 1.38340 * 120.04988 * 85.38139 * 15 14 13 17 17 F 1.35098 * 119.98832 * 0.02562 * 16 15 14 18 18 C 1.38494 * 120.02360 * 180.02562 * 16 15 14 19 19 C 1.38272 * 120.12530 * 0.02562 * 18 16 15 20 20 C 1.38099 * 120.09453 * 359.97438 * 19 18 16 21 21 C 1.38844 * 120.04820 * 265.40711 * 15 14 13 22 22 N 1.39677 * 120.06011 * 359.95280 * 21 15 14 23 23 C 1.48533 * 110.99995 * 53.58243 * 22 21 15 24 24 C 1.54938 * 103.22671 * 159.71962 * 23 22 21 25 25 C 1.54601 * 102.92060 * 322.58495 * 24 23 22 26 26 C 1.47905 * 110.99604 * 170.97692 * 22 21 15 27 27 H 0.97005 * 119.99821 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47388 * 59.99763 * 10 9 7 29 29 H 1.08999 * 109.47647 * 299.99745 * 10 9 7 30 30 H 0.96997 * 120.00394 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.47249 * 59.99755 * 14 13 11 32 32 H 1.08999 * 109.46896 * 299.99831 * 14 13 11 33 33 H 1.08003 * 119.93803 * 179.97438 * 18 16 15 34 34 H 1.07995 * 119.95278 * 179.69842 * 19 18 16 35 35 H 1.07997 * 120.00728 * 179.97438 * 20 19 18 36 36 H 1.08995 * 110.66595 * 278.15174 * 23 22 21 37 37 H 1.09003 * 110.66573 * 41.28482 * 23 22 21 38 38 H 1.08994 * 110.71950 * 204.22911 * 24 23 22 39 39 H 1.08995 * 110.72435 * 80.93905 * 24 23 22 40 40 H 1.09000 * 110.30950 * 263.04277 * 25 24 23 41 41 H 1.08994 * 110.30775 * 140.87546 * 25 24 23 42 42 H 1.08995 * 109.91793 * 333.51002 * 26 22 21 43 43 H 1.09002 * 109.91592 * 94.80859 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2020 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0021 12 8 6.3440 -2.2964 -0.0025 13 7 6.0455 -4.4948 -0.0016 14 6 7.4906 -4.7359 -0.0021 15 6 7.7523 -6.2200 -0.0020 16 6 7.7771 -6.9192 -1.1955 17 9 7.5672 -6.2712 -2.3622 18 6 8.0171 -8.2832 -1.1947 19 6 8.2318 -8.9493 -0.0023 20 6 8.2081 -8.2564 1.1921 21 6 7.9682 -6.8878 1.1960 22 7 7.9444 -6.1851 2.4028 23 6 6.6837 -5.4125 2.5441 24 6 6.5929 -5.1579 4.0697 25 6 7.1326 -6.4752 4.6727 26 6 7.9813 -7.1108 3.5559 27 1 -0.4850 0.8401 0.0004 28 1 3.6432 -3.4318 -0.8906 29 1 3.6440 -3.4315 0.8893 30 1 5.4289 -5.2435 -0.0009 31 1 7.9340 -4.2883 0.8873 32 1 7.9331 -4.2894 -0.8926 33 1 8.0358 -8.8277 -2.1273 34 1 8.4138 -10.0138 -0.0045 35 1 8.3756 -8.7782 2.1227 36 1 6.7470 -4.4702 2.0000 37 1 5.8320 -5.9998 2.2007 38 1 5.5591 -4.9905 4.3719 39 1 7.2216 -4.3157 4.3583 40 1 6.3072 -7.1342 4.9420 41 1 7.7511 -6.2663 5.5454 42 1 7.5594 -8.0748 3.2718 43 1 9.0087 -7.2380 3.8971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286315891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:02 Heat of formation + Delta-G solvation = -30.254719 kcal Electronic energy + Delta-G solvation = -26956.230852 eV Core-core repulsion = 23042.727600 eV Total energy + Delta-G solvation = -3913.503252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.14590 -41.10907 -39.15033 -37.94407 -35.12686 -33.01537 -32.43974 -31.70272 -29.55483 -29.29540 -28.67408 -25.96574 -25.52190 -23.61809 -22.16464 -21.45941 -20.68930 -20.53539 -18.28228 -17.80334 -17.21450 -16.61882 -16.36595 -16.07894 -16.06074 -15.74834 -15.41430 -15.15929 -14.94902 -14.49226 -13.95794 -13.85518 -13.73239 -13.49435 -13.35632 -13.19313 -12.94194 -12.79233 -12.56847 -12.23400 -12.11672 -11.81527 -11.56669 -11.45784 -11.26489 -11.07801 -11.00570 -10.83812 -10.61532 -10.11282 -9.87200 -9.66141 -9.06480 -9.01689 -8.97002 -8.50087 -8.33023 -6.91660 -6.28980 -4.00642 0.71546 0.82035 2.75280 2.95513 3.04034 3.32405 3.35033 3.46484 3.50916 3.72180 4.02073 4.19042 4.21938 4.33330 4.39210 4.47264 4.54247 4.61782 4.73667 4.87324 4.91382 5.04276 5.10210 5.13774 5.24268 5.27365 5.32125 5.42974 5.49035 5.49774 5.60421 5.67216 5.74376 5.75672 5.82765 5.87178 5.93284 5.94006 6.00587 6.31059 6.42317 6.48177 6.78845 7.56484 7.94108 8.41548 8.45839 9.17300 10.80280 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.003017 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.488998 B = 9278.771529 C =10433.773103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.139 6.139 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.515 6.515 13 N -0.734 5.734 14 C 0.162 3.838 15 C -0.167 4.167 16 C 0.144 3.856 17 F -0.130 7.130 18 C -0.187 4.187 19 C -0.056 4.056 20 C -0.188 4.188 21 C 0.154 3.846 22 N -0.468 5.468 23 C 0.025 3.975 24 C -0.127 4.127 25 C -0.132 4.132 26 C 0.026 3.974 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.398 0.602 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.288 -21.809 5.757 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.087 5.913 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.389 5.389 14 C 0.039 3.961 15 C -0.171 4.171 16 C 0.124 3.876 17 F -0.108 7.108 18 C -0.206 4.206 19 C -0.075 4.075 20 C -0.209 4.209 21 C 0.054 3.946 22 N -0.181 5.181 23 C -0.099 4.099 24 C -0.165 4.165 25 C -0.170 4.170 26 C -0.101 4.101 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.232 0.768 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.842 -19.688 5.793 27.861 hybrid contribution -1.617 -1.201 -0.382 2.050 sum 17.224 -20.889 5.411 27.610 Atomic orbital electron populations 1.69941 1.05929 1.27764 1.48103 1.24709 0.94444 0.98965 0.93171 0.86738 0.81896 0.83271 0.79971 1.19197 1.19954 1.15885 1.22318 0.88306 0.97518 1.58762 0.89416 1.84797 1.09217 0.99893 1.97418 1.23283 0.93877 1.04487 1.05804 1.20299 0.90622 0.82108 0.75312 1.90715 1.58695 1.42057 1.47486 1.46235 1.06883 1.08157 1.77615 1.20090 0.82215 0.89769 1.04059 1.19486 1.10123 0.96378 0.91151 1.17393 0.99043 0.90380 0.80832 1.91546 1.91869 1.81612 1.45771 1.21074 1.06894 0.92593 1.00083 1.20878 0.95539 0.99979 0.91111 1.21326 1.07541 0.92641 0.99345 1.18741 0.94879 0.90922 0.90107 1.61683 1.34533 1.21693 1.00240 1.23938 0.88284 0.99754 0.97966 1.22556 1.02231 0.97852 0.93885 1.22429 0.99425 0.97131 0.97995 1.23222 1.01722 0.95001 0.90129 0.91944 0.88498 0.88505 0.76762 0.88957 0.90514 0.84639 0.84847 0.84422 0.87067 0.92509 0.90089 0.90233 0.91038 0.90583 0.91587 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.79 27.74 -169.99 -4.71 17.08 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.23 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 10 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 11 C 0.53 9.33 7.47 -10.98 -0.08 9.25 16 12 O -0.52 -11.05 15.86 5.56 0.09 -10.96 16 13 N -0.73 -9.66 3.71 -61.46 -0.23 -9.89 16 14 C 0.16 2.05 4.39 -5.19 -0.02 2.03 16 15 C -0.17 -1.81 5.11 -104.36 -0.53 -2.34 16 16 C 0.14 1.53 7.24 -39.45 -0.29 1.24 16 17 F -0.13 -1.60 16.56 2.25 0.04 -1.56 16 18 C -0.19 -1.55 10.02 -39.47 -0.40 -1.94 16 19 C -0.06 -0.38 10.04 -39.62 -0.40 -0.78 16 20 C -0.19 -1.42 8.76 -39.37 -0.34 -1.76 16 21 C 0.15 1.47 5.57 -83.80 -0.47 1.00 16 22 N -0.47 -4.42 4.88 -167.17 -0.82 -5.24 16 23 C 0.02 0.25 4.52 -1.90 -0.01 0.24 16 24 C -0.13 -1.12 7.06 -24.87 -0.18 -1.29 16 25 C -0.13 -0.89 6.93 -25.37 -0.18 -1.07 16 26 C 0.03 0.18 5.80 -2.75 -0.02 0.16 16 27 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 29 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.40 4.39 8.33 -40.82 -0.34 4.05 16 31 H 0.09 1.24 5.84 -51.93 -0.30 0.94 16 32 H 0.08 1.09 7.78 -51.93 -0.40 0.68 16 33 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 35 H 0.14 0.77 5.69 -52.49 -0.30 0.47 16 36 H 0.11 1.36 4.05 -51.93 -0.21 1.15 16 37 H 0.06 0.55 7.85 -51.93 -0.41 0.14 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.39 5.54 -51.93 -0.29 0.10 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -33.59 361.35 -9.51 -43.10 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.63 Total: 2.72 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -2.47 Total: -9.38 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -0.27 Total: -40.93 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.59 -9.51 -43.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286315891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.847 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds