Wall clock time and date at job start Tue Mar 31 2020 20:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00433 * 2 1 4 4 H 1.48498 * 109.47622 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47097 * 300.00418 * 3 2 1 6 6 H 1.48500 * 109.47283 * 59.99857 * 3 2 1 7 7 C 1.38813 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00686 * 163.06405 * 7 2 1 9 9 N 1.36948 * 119.99622 * 343.06825 * 7 2 1 10 10 C 1.46923 * 120.63118 * 331.84735 * 9 7 2 11 11 C 1.53185 * 108.77799 * 233.58977 * 10 9 7 12 12 C 1.53043 * 109.31031 * 305.36376 * 11 10 9 13 13 C 1.53008 * 109.45894 * 181.38337 * 12 11 10 14 14 N 1.46505 * 109.46806 * 175.00166 * 13 12 11 15 15 C 1.38517 * 119.99852 * 180.02562 * 14 13 12 16 16 N 1.32587 * 119.55025 * 359.97438 * 15 14 13 17 17 C 1.31625 * 121.78734 * 180.02562 * 16 15 14 18 18 C 1.39565 * 120.66946 * 0.02562 * 17 16 15 19 19 C 1.47540 * 120.47634 * 179.97438 * 18 17 16 20 20 N 1.34774 * 119.99889 * 0.02562 * 19 18 17 21 21 O 1.21593 * 120.00167 * 179.97438 * 19 18 17 22 22 C 1.40345 * 119.04857 * 0.22724 * 18 17 16 23 23 C 1.37957 * 118.36260 * 359.48687 * 22 18 17 24 24 Cl 1.73604 * 120.37997 * 180.23629 * 23 22 18 25 25 C 1.53042 * 109.53844 * 61.36717 * 12 11 10 26 26 C 1.46924 * 120.63102 * 151.82713 * 9 7 2 27 27 H 0.96997 * 119.99713 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.58439 * 113.80015 * 10 9 7 29 29 H 1.09005 * 109.70318 * 353.45041 * 10 9 7 30 30 H 1.09001 * 109.50203 * 185.41844 * 11 10 9 31 31 H 1.09004 * 109.52524 * 65.33115 * 11 10 9 32 32 H 1.08993 * 109.46170 * 301.35901 * 12 11 10 33 33 H 1.09000 * 109.46929 * 55.00225 * 13 12 11 34 34 H 1.08997 * 109.47008 * 294.99945 * 13 12 11 35 35 H 0.97002 * 120.00199 * 0.02562 * 14 13 12 36 36 H 1.07991 * 119.66481 * 180.02562 * 17 16 15 37 37 H 0.96996 * 119.99951 * 0.02562 * 20 19 18 38 38 H 0.97000 * 119.99742 * 179.72161 * 20 19 18 39 39 H 1.08002 * 120.81822 * 179.74386 * 22 18 17 40 40 H 1.08997 * 109.49818 * 58.58254 * 25 12 11 41 41 H 1.09000 * 109.49619 * 178.68339 * 25 12 11 42 42 H 1.08991 * 109.58701 * 246.20317 * 26 9 7 43 43 H 1.09009 * 109.58700 * 6.48066 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2224 -0.2730 9 7 1.3700 -2.3626 0.3444 10 6 0.2261 -2.3409 1.2661 11 6 0.4975 -3.3208 2.4119 12 6 0.8119 -4.7020 1.8328 13 6 1.0497 -5.6917 2.9753 14 7 1.2327 -7.0373 2.4255 15 6 1.4634 -8.1069 3.2748 16 7 1.5174 -7.9027 4.5838 17 6 1.7345 -8.8867 5.4307 18 6 1.9177 -10.1924 4.9731 19 6 2.1613 -11.2920 5.9261 20 7 2.2078 -11.0392 7.2491 21 8 2.3192 -12.4265 5.5180 22 6 1.8720 -10.4436 3.5930 23 6 1.6359 -9.3841 2.7416 24 17 1.5626 -9.6364 1.0255 25 6 2.0674 -4.6180 0.9615 26 6 1.8137 -3.6528 -0.2007 27 1 -0.4849 0.8400 0.0004 28 1 -0.6770 -2.6411 0.7347 29 1 0.0967 -1.3358 1.6677 30 1 -0.3831 -3.3862 3.0510 31 1 1.3470 -2.9699 2.9978 32 1 -0.0281 -5.0417 1.2270 33 1 0.1898 -5.6866 3.6451 34 1 1.9428 -5.4005 3.5281 35 1 1.1922 -7.1792 1.4668 36 1 1.7713 -8.6816 6.4903 37 1 2.0807 -10.1345 7.5747 38 1 2.3640 -11.7629 7.8759 39 1 2.0141 -11.4423 3.2074 40 1 2.9023 -4.2547 1.5606 41 1 2.3041 -5.6067 0.5683 42 1 1.0401 -4.0599 -0.8516 43 1 2.7331 -3.5126 -0.7693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301679097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:20 Heat of formation + Delta-G solvation = 5.638980 kcal Electronic energy + Delta-G solvation = -26188.781783 eV Core-core repulsion = 22294.711254 eV Total energy + Delta-G solvation = -3894.070529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.97090 -39.33883 -38.14220 -36.88767 -35.87656 -34.17926 -33.31364 -32.55906 -31.16637 -30.14847 -29.43936 -26.82298 -24.48317 -24.45784 -23.12266 -22.15709 -21.20698 -21.03005 -19.26889 -18.68275 -17.96726 -17.61204 -16.73093 -16.43032 -15.66427 -15.51978 -15.15727 -14.88798 -14.71753 -14.30020 -14.08366 -13.78377 -13.66089 -13.54825 -13.35677 -13.23074 -12.53320 -12.35503 -12.31652 -12.07560 -11.47141 -11.39498 -11.04613 -10.76415 -10.72497 -10.59025 -10.54396 -10.28249 -10.19818 -10.10281 -9.96762 -9.90937 -9.82860 -9.56621 -9.49846 -8.50209 -8.03191 -6.69930 -5.81797 -3.24271 0.44115 0.77574 1.76514 2.54806 2.84055 3.13775 3.34847 3.43082 3.45166 3.48590 3.98727 4.40482 4.43239 4.47256 4.58644 4.82143 5.02512 5.15080 5.26541 5.34772 5.38020 5.53887 5.55411 5.76372 5.80255 5.90773 5.97534 6.10467 6.27256 6.38166 6.40007 6.54047 6.58682 6.70977 6.73975 6.78637 6.90454 6.93573 6.96047 7.32950 7.62166 7.70568 7.77444 7.88713 8.42530 9.18865 9.82167 10.38785 11.26788 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.002192 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.770956 B =12769.944813 C =13481.246777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.131 4.131 12 C -0.093 4.093 13 C 0.129 3.871 14 N -0.694 5.694 15 C 0.445 3.555 16 N -0.530 5.530 17 C 0.201 3.799 18 C -0.264 4.264 19 C 0.580 3.420 20 N -0.853 5.853 21 O -0.547 6.547 22 C 0.040 3.960 23 C -0.173 4.173 24 Cl -0.052 7.052 25 C -0.127 4.127 26 C 0.145 3.855 27 H 0.253 0.747 28 H 0.017 0.983 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.415 0.585 36 H 0.163 0.837 37 H 0.400 0.600 38 H 0.405 0.595 39 H 0.154 0.846 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.016 0.984 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -20.004 12.470 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.170 4.170 12 C -0.112 4.112 13 C 0.006 3.994 14 N -0.322 5.322 15 C 0.205 3.795 16 N -0.248 5.248 17 C 0.038 3.962 18 C -0.273 4.273 19 C 0.366 3.634 20 N -0.417 5.417 21 O -0.424 6.424 22 C 0.013 3.987 23 C -0.207 4.207 24 Cl -0.024 7.024 25 C -0.167 4.167 26 C 0.018 3.982 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.254 0.746 36 H 0.180 0.820 37 H 0.230 0.770 38 H 0.237 0.763 39 H 0.171 0.829 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.821 -19.420 12.166 22.989 hybrid contribution 0.461 0.130 -0.367 0.603 sum 2.282 -19.290 11.799 22.727 Atomic orbital electron populations 1.70035 1.05257 1.25398 1.54062 1.25050 0.95300 0.98432 1.00938 0.86238 0.79378 0.83959 0.77284 1.20267 1.21748 1.21533 1.19226 0.92550 0.84789 1.41525 0.91701 1.44061 1.35894 1.01521 1.50031 1.20761 0.88619 0.98155 0.87916 1.22161 1.00355 0.94428 1.00092 1.21350 0.98868 0.95480 0.95478 1.21702 1.01832 0.79167 0.96695 1.45084 1.72648 1.06016 1.08480 1.18288 0.87283 0.85665 0.88272 1.67448 1.22141 1.34673 1.00524 1.22716 0.87744 0.86693 0.99006 1.20381 1.17789 0.95124 0.94012 1.17821 0.75380 0.87790 0.82384 1.43707 1.76537 1.14111 1.07341 1.90829 1.50321 1.22772 1.78527 1.21279 0.87738 0.98708 0.90940 1.21084 1.18549 0.94285 0.86824 1.98375 1.97311 1.96548 1.10144 1.22075 0.96966 0.98712 0.98908 1.20884 0.97587 0.87019 0.92664 0.93681 0.96467 0.89349 0.93022 0.92322 0.91312 0.91361 0.91157 0.74628 0.81986 0.77042 0.76336 0.82861 0.92073 0.93608 0.96617 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.81 11.19 55.49 0.62 -25.19 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.77 9.58 -15.05 -0.14 -6.92 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.39 2.99 -172.32 -0.52 -14.91 16 10 C 0.17 3.91 5.30 -3.72 -0.02 3.89 16 11 C -0.13 -2.29 5.36 -26.61 -0.14 -2.43 16 12 C -0.09 -1.39 2.19 -90.57 -0.20 -1.58 16 13 C 0.13 1.63 5.06 -4.03 -0.02 1.61 16 14 N -0.69 -8.13 5.36 -60.41 -0.32 -8.46 16 15 C 0.45 5.14 7.47 -155.20 -1.16 3.98 16 16 N -0.53 -5.79 9.52 -12.12 -0.12 -5.90 16 17 C 0.20 1.64 10.70 -17.15 -0.18 1.46 16 18 C -0.26 -2.41 5.89 -104.82 -0.62 -3.03 16 19 C 0.58 5.31 8.04 -12.47 -0.10 5.21 16 20 N -0.85 -4.04 8.83 30.46 0.27 -3.77 16 21 O -0.55 -7.17 17.25 5.28 0.09 -7.08 16 22 C 0.04 0.40 9.50 -38.89 -0.37 0.03 16 23 C -0.17 -1.86 6.35 -39.22 -0.25 -2.11 16 24 Cl -0.05 -0.54 27.59 -51.86 -1.43 -1.97 16 25 C -0.13 -2.04 5.25 -26.61 -0.14 -2.18 16 26 C 0.14 2.92 6.52 -3.71 -0.02 2.89 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 2.28 6.07 -51.93 -0.31 1.97 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.41 4.69 6.27 -40.82 -0.26 4.44 16 36 H 0.16 0.66 6.40 -52.49 -0.34 0.33 16 37 H 0.40 0.76 6.88 -40.82 -0.28 0.48 16 38 H 0.41 1.44 8.93 -40.82 -0.36 1.08 16 39 H 0.15 1.50 7.73 -52.49 -0.41 1.09 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.63 7.15 -51.93 -0.37 0.26 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.05 1.07 7.93 -51.92 -0.41 0.66 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -32.28 364.46 -10.07 -42.34 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.67 Total: 2.28 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -3.45 Total: 0.78 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.06 Total: -58.22 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.09 Total: -7.08 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.43 Total: -1.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.28 -10.07 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301679097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.984 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds