Wall clock time and date at job start Tue Mar 31 2020 20:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00433 * 2 1 4 4 H 1.48498 * 109.47622 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47097 * 300.00418 * 3 2 1 6 6 H 1.48500 * 109.47283 * 59.99857 * 3 2 1 7 7 C 1.38813 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00686 * 163.06405 * 7 2 1 9 9 N 1.36948 * 119.99622 * 343.06825 * 7 2 1 10 10 C 1.46923 * 120.63118 * 331.84735 * 9 7 2 11 11 C 1.53185 * 108.77799 * 233.58977 * 10 9 7 12 12 C 1.53043 * 109.31031 * 305.36376 * 11 10 9 13 13 C 1.53008 * 109.45894 * 181.38337 * 12 11 10 14 14 N 1.46505 * 109.46806 * 175.00166 * 13 12 11 15 15 C 1.38517 * 119.99852 * 180.02562 * 14 13 12 16 16 N 1.32587 * 119.55025 * 359.97438 * 15 14 13 17 17 C 1.31625 * 121.78734 * 180.02562 * 16 15 14 18 18 C 1.39565 * 120.66946 * 0.02562 * 17 16 15 19 19 C 1.47540 * 120.47634 * 179.97438 * 18 17 16 20 20 N 1.34774 * 119.99889 * 0.02562 * 19 18 17 21 21 O 1.21593 * 120.00167 * 179.97438 * 19 18 17 22 22 C 1.40345 * 119.04857 * 0.22724 * 18 17 16 23 23 C 1.37957 * 118.36260 * 359.48687 * 22 18 17 24 24 Cl 1.73604 * 120.37997 * 180.23629 * 23 22 18 25 25 C 1.53042 * 109.53844 * 61.36717 * 12 11 10 26 26 C 1.46924 * 120.63102 * 151.82713 * 9 7 2 27 27 H 0.96997 * 119.99713 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.58439 * 113.80015 * 10 9 7 29 29 H 1.09005 * 109.70318 * 353.45041 * 10 9 7 30 30 H 1.09001 * 109.50203 * 185.41844 * 11 10 9 31 31 H 1.09004 * 109.52524 * 65.33115 * 11 10 9 32 32 H 1.08993 * 109.46170 * 301.35901 * 12 11 10 33 33 H 1.09000 * 109.46929 * 55.00225 * 13 12 11 34 34 H 1.08997 * 109.47008 * 294.99945 * 13 12 11 35 35 H 0.97002 * 120.00199 * 0.02562 * 14 13 12 36 36 H 1.07991 * 119.66481 * 180.02562 * 17 16 15 37 37 H 0.96996 * 119.99951 * 0.02562 * 20 19 18 38 38 H 0.97000 * 119.99742 * 179.72161 * 20 19 18 39 39 H 1.08002 * 120.81822 * 179.74386 * 22 18 17 40 40 H 1.08997 * 109.49818 * 58.58254 * 25 12 11 41 41 H 1.09000 * 109.49619 * 178.68339 * 25 12 11 42 42 H 1.08991 * 109.58701 * 246.20317 * 26 9 7 43 43 H 1.09009 * 109.58700 * 6.48066 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2224 -0.2730 9 7 1.3700 -2.3626 0.3444 10 6 0.2261 -2.3409 1.2661 11 6 0.4975 -3.3208 2.4119 12 6 0.8119 -4.7020 1.8328 13 6 1.0497 -5.6917 2.9753 14 7 1.2327 -7.0373 2.4255 15 6 1.4634 -8.1069 3.2748 16 7 1.5174 -7.9027 4.5838 17 6 1.7345 -8.8867 5.4307 18 6 1.9177 -10.1924 4.9731 19 6 2.1613 -11.2920 5.9261 20 7 2.2078 -11.0392 7.2491 21 8 2.3192 -12.4265 5.5180 22 6 1.8720 -10.4436 3.5930 23 6 1.6359 -9.3841 2.7416 24 17 1.5626 -9.6364 1.0255 25 6 2.0674 -4.6180 0.9615 26 6 1.8137 -3.6528 -0.2007 27 1 -0.4849 0.8400 0.0004 28 1 -0.6770 -2.6411 0.7347 29 1 0.0967 -1.3358 1.6677 30 1 -0.3831 -3.3862 3.0510 31 1 1.3470 -2.9699 2.9978 32 1 -0.0281 -5.0417 1.2270 33 1 0.1898 -5.6866 3.6451 34 1 1.9428 -5.4005 3.5281 35 1 1.1922 -7.1792 1.4668 36 1 1.7713 -8.6816 6.4903 37 1 2.0807 -10.1345 7.5747 38 1 2.3640 -11.7629 7.8759 39 1 2.0141 -11.4423 3.2074 40 1 2.9023 -4.2547 1.5606 41 1 2.3041 -5.6067 0.5683 42 1 1.0401 -4.0599 -0.8516 43 1 2.7331 -3.5126 -0.7693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301679097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:19 Heat of formation + Delta-G solvation = -16.417308 kcal Electronic energy + Delta-G solvation = -26189.738215 eV Core-core repulsion = 22294.711254 eV Total energy + Delta-G solvation = -3895.026961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72598 -40.15340 -39.48654 -37.66771 -37.07037 -35.06198 -34.62599 -33.35783 -32.77327 -31.56510 -30.65524 -28.21325 -25.97569 -25.21474 -24.27608 -23.65959 -22.43936 -21.91391 -20.75100 -19.41377 -18.87690 -18.53663 -18.27415 -17.16033 -16.84654 -16.40005 -16.34655 -15.95342 -15.78092 -15.48453 -15.30502 -15.11563 -14.98801 -14.77156 -14.52721 -14.06681 -13.89295 -13.86497 -13.59603 -13.10715 -13.01033 -12.84160 -12.59295 -12.30627 -12.19106 -11.98498 -11.84442 -11.67588 -11.51063 -11.38782 -11.18424 -11.04194 -10.70980 -10.66108 -10.59659 -10.53476 -8.85135 -8.66975 -7.87349 -5.32487 -0.29856 0.02107 0.98950 1.45570 1.47786 1.58002 1.81905 1.98135 2.51277 2.57284 2.75482 3.25823 3.29250 3.66248 3.70830 3.73785 3.86014 3.94564 3.97350 4.08896 4.13152 4.52792 4.53829 4.56964 4.69959 4.75650 4.82070 4.87247 4.95165 5.00517 5.10959 5.19454 5.29118 5.31518 5.40972 5.55124 5.66522 5.78207 5.90398 5.92583 6.09641 6.40181 6.44644 6.91401 7.16101 7.33066 7.87892 8.38661 9.18870 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.002192 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.770956 B =12769.944813 C =13481.246777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.176 3.824 11 C -0.117 4.117 12 C -0.083 4.083 13 C 0.147 3.853 14 N -0.698 5.698 15 C 0.435 3.565 16 N -0.543 5.543 17 C 0.209 3.791 18 C -0.262 4.262 19 C 0.579 3.421 20 N -0.828 5.828 21 O -0.593 6.593 22 C 0.032 3.968 23 C -0.179 4.179 24 Cl -0.053 7.053 25 C -0.113 4.113 26 C 0.139 3.861 27 H 0.250 0.750 28 H -0.005 1.005 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.415 0.585 36 H 0.205 0.795 37 H 0.417 0.583 38 H 0.415 0.585 39 H 0.151 0.849 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.013 0.987 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 -21.062 14.509 25.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.221 1.221 6 H -0.215 1.215 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.050 3.950 11 C -0.157 4.157 12 C -0.102 4.102 13 C 0.024 3.976 14 N -0.327 5.327 15 C 0.196 3.804 16 N -0.262 5.262 17 C 0.048 3.952 18 C -0.271 4.271 19 C 0.365 3.635 20 N -0.393 5.393 21 O -0.474 6.474 22 C 0.006 3.994 23 C -0.213 4.213 24 Cl -0.025 7.025 25 C -0.152 4.152 26 C 0.014 3.986 27 H 0.059 0.941 28 H 0.013 0.987 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.254 0.746 36 H 0.222 0.778 37 H 0.249 0.751 38 H 0.247 0.753 39 H 0.169 0.831 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.031 0.969 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.651 -20.494 14.258 25.106 hybrid contribution 0.211 0.379 -0.972 1.064 sum 2.863 -20.115 13.287 24.276 Atomic orbital electron populations 1.70183 1.06605 1.25739 1.55576 1.25782 0.96056 1.01442 1.01418 0.85244 0.78617 0.80013 0.76795 1.19208 1.22069 1.21511 1.19524 0.92731 0.86113 1.40687 0.91849 1.44342 1.36022 1.02286 1.50865 1.20591 0.87605 0.97718 0.89079 1.21931 1.01211 0.94464 0.98078 1.21188 0.98258 0.94648 0.96103 1.21366 1.02011 0.78988 0.95250 1.44932 1.73533 1.05680 1.08574 1.18379 0.87762 0.85622 0.88684 1.67515 1.22638 1.35594 1.00420 1.23325 0.85798 0.85590 1.00514 1.20492 1.17252 0.95738 0.93645 1.17860 0.75101 0.86962 0.83542 1.43517 1.74360 1.15484 1.05915 1.90816 1.52741 1.24389 1.79482 1.21390 0.87773 0.98571 0.91683 1.21080 1.19087 0.94253 0.86901 1.98371 1.97354 1.96544 1.10222 1.21899 0.97261 0.98759 0.97298 1.21054 0.97068 0.86213 0.94284 0.94127 0.98704 0.92912 0.90860 0.92606 0.91295 0.90733 0.91308 0.74551 0.77822 0.75066 0.75283 0.83098 0.92610 0.90798 0.96927 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.99 11.19 21.65 0.24 -54.75 16 2 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 3 Si 0.96 44.64 29.59 68.60 2.03 46.67 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 7 C -0.26 -14.23 9.58 84.03 0.81 -13.43 16 8 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 9 N -0.61 -30.14 2.99 -699.10 -2.09 -32.23 16 10 C 0.18 8.19 5.30 86.36 0.46 8.65 16 11 C -0.12 -4.00 5.36 30.67 0.16 -3.83 16 12 C -0.08 -2.34 2.19 -10.76 -0.02 -2.36 16 13 C 0.15 3.34 5.06 86.38 0.44 3.78 16 14 N -0.70 -14.82 5.36 -345.04 -1.85 -16.67 16 15 C 0.44 9.12 7.47 133.26 1.00 10.12 16 16 N -0.54 -10.30 9.52 -192.26 -1.83 -12.14 16 17 C 0.21 2.73 10.70 85.04 0.91 3.64 16 18 C -0.26 -4.22 5.89 -19.99 -0.12 -4.33 16 19 C 0.58 9.43 8.04 86.70 0.70 10.12 16 20 N -0.83 -5.26 8.83 -175.81 -1.55 -6.81 16 21 O -0.59 -15.05 17.25 -4.01 -0.07 -15.12 16 22 C 0.03 0.62 9.50 22.72 0.22 0.83 16 23 C -0.18 -3.60 6.35 22.50 0.14 -3.46 16 24 Cl -0.05 -1.04 27.59 -2.72 -0.08 -1.12 16 25 C -0.11 -3.45 5.25 30.67 0.16 -3.28 16 26 C 0.14 5.57 6.52 86.36 0.56 6.13 16 27 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 28 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.05 2.82 6.07 -2.38 -0.01 2.81 16 30 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.42 8.56 6.27 -92.71 -0.58 7.98 16 36 H 0.21 0.69 6.40 -2.92 -0.02 0.68 16 37 H 0.42 -0.13 6.88 -92.71 -0.64 -0.77 16 38 H 0.41 1.76 8.93 -92.71 -0.83 0.93 16 39 H 0.15 2.91 7.73 -2.91 -0.02 2.89 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.86 7.15 -2.39 -0.02 1.84 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.05 1.98 7.93 -2.38 -0.02 1.97 16 Total: -1.00 -71.86 364.46 -0.34 -72.19 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -0.97 Total: 9.84 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.83 Total: 10.13 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -7.08 Total: -122.59 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.07 Total: -15.12 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -71.86 -0.34 -72.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301679097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.776 kcal (2) G-P(sol) polarization free energy of solvation -71.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds