Wall clock time and date at job start Tue Mar 31 2020 20:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 117.00037 * 2 1 4 4 O 1.20824 * 120.00378 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00044 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46977 * 300.00843 * 5 3 2 7 7 C 1.50699 * 109.47041 * 59.99983 * 5 3 2 8 8 C 1.38261 * 120.00008 * 260.00309 * 7 5 3 9 9 C 1.38214 * 120.02970 * 179.72309 * 8 7 5 10 10 C 1.38233 * 120.01234 * 0.02562 * 9 8 7 11 11 C 1.38326 * 119.99084 * 0.02562 * 10 9 8 12 12 Cl 1.73600 * 120.01788 * 179.97438 * 11 10 9 13 13 C 1.38194 * 119.98718 * 79.72761 * 7 5 3 14 14 N 1.46897 * 109.47556 * 180.02562 * 5 3 2 15 15 C 1.46900 * 111.00393 * 184.30543 * 14 5 3 16 16 C 1.53238 * 109.34245 * 172.74467 * 15 14 5 17 17 N 1.47079 * 108.52040 * 53.82614 * 16 15 14 18 18 C 1.36940 * 120.87993 * 128.84069 * 17 16 15 19 19 H 1.08002 * 119.99607 * 206.56186 * 18 17 16 20 20 C 1.38805 * 119.99945 * 26.55937 * 18 17 16 21 21 N 1.31621 * 120.00058 * 17.02420 * 20 18 17 22 22 Si 1.86799 * 120.00059 * 197.01790 * 20 18 17 23 23 H 1.48497 * 109.47107 * 90.00227 * 22 20 18 24 24 H 1.48507 * 109.47284 * 210.00458 * 22 20 18 25 25 H 1.48502 * 109.46878 * 330.00082 * 22 20 18 26 26 C 1.47081 * 118.23795 * 308.81361 * 17 16 15 27 27 C 1.46897 * 111.00080 * 59.99578 * 14 5 3 28 28 H 1.08991 * 109.47369 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46971 * 300.00043 * 1 2 3 30 30 H 1.09009 * 109.46759 * 59.99384 * 1 2 3 31 31 H 1.08001 * 119.98198 * 359.74131 * 8 7 5 32 32 H 1.08007 * 119.99338 * 180.02562 * 9 8 7 33 33 H 1.08005 * 120.00941 * 179.97438 * 10 9 8 34 34 H 1.07997 * 120.01149 * 0.27792 * 13 7 5 35 35 H 1.08999 * 109.48944 * 292.70216 * 15 14 5 36 36 H 1.08999 * 109.49485 * 52.77793 * 15 14 5 37 37 H 1.09003 * 109.62241 * 294.11614 * 16 15 14 38 38 H 1.08996 * 109.62956 * 173.53646 * 16 15 14 39 39 H 0.97001 * 120.00083 * 180.02562 * 21 20 18 40 40 H 1.08999 * 109.63162 * 291.47675 * 26 17 16 41 41 H 1.09002 * 109.62831 * 170.89635 * 26 17 16 42 42 H 1.09000 * 109.49370 * 307.21637 * 27 14 5 43 43 H 1.09001 * 109.49276 * 67.30103 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7804 0.8891 7 6 4.1047 0.5919 -1.2314 8 6 4.5992 -0.6964 -1.1467 9 6 5.0878 -1.3254 -2.2763 10 6 5.0828 -0.6664 -3.4914 11 6 4.5891 0.6229 -3.5767 12 17 4.5831 1.4514 -5.1023 13 6 4.0986 1.2516 -2.4457 14 7 3.9830 2.6835 0.0002 15 6 5.4436 2.8006 -0.1033 16 6 5.8232 4.2745 -0.2816 17 7 5.2129 5.0494 0.8094 18 6 5.9642 5.9065 1.5685 19 1 5.6653 6.1344 2.5810 20 6 7.1098 6.4821 1.0366 21 7 7.3008 6.4857 -0.2657 22 14 8.3803 7.2520 2.1690 23 1 9.3788 6.2258 2.5629 24 1 9.0655 8.3634 1.4614 25 1 7.7067 7.7789 3.3831 26 6 3.7741 4.8798 1.0631 27 6 3.4751 3.3820 1.1884 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 4.6034 -1.2116 -0.1975 32 1 5.4736 -2.3320 -2.2095 33 1 5.4650 -1.1579 -4.3740 34 1 3.7124 2.2580 -2.5118 35 1 5.9048 2.4136 0.8053 36 1 5.7945 2.2282 -0.9620 37 1 5.4502 4.6352 -1.2402 38 1 6.9074 4.3805 -0.2440 39 1 8.1016 6.8877 -0.6373 40 1 3.2041 5.2988 0.2338 41 1 3.5035 5.3860 1.9897 42 1 2.3984 3.2313 1.2665 43 1 3.9637 2.9870 2.0791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342628407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:45 Heat of formation + Delta-G solvation = -14.661101 kcal Electronic energy + Delta-G solvation = -27982.352967 eV Core-core repulsion = 24055.109410 eV Total energy + Delta-G solvation = -3927.243558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.90519 -39.39777 -37.95256 -36.45610 -36.34370 -34.61901 -32.28725 -30.85395 -30.59184 -29.95298 -28.53549 -27.16485 -25.16032 -23.02372 -22.88235 -22.51017 -21.91509 -20.43963 -19.13117 -17.75377 -17.14913 -16.74347 -16.67761 -16.28038 -15.67853 -15.46465 -14.83816 -14.40823 -14.21483 -14.06164 -13.77799 -13.73588 -13.42233 -13.37945 -13.03439 -12.97001 -12.71600 -12.25051 -12.07176 -11.65338 -11.55623 -11.44197 -11.38652 -11.08688 -10.87910 -10.84117 -10.75506 -10.63196 -10.41320 -10.16859 -10.02272 -9.70864 -9.55356 -8.91050 -8.75769 -8.48645 -7.98002 -6.64444 -5.75391 -3.16403 1.00860 1.18011 2.12114 2.21233 2.56307 3.39442 3.46367 3.47709 3.50679 4.20491 4.44264 4.52653 4.75494 4.80050 4.96815 4.98212 5.04549 5.07683 5.15710 5.37550 5.39026 5.41700 5.48048 5.53836 5.80215 5.85741 5.92885 6.12731 6.15340 6.19182 6.22425 6.27007 6.37154 6.42033 6.53683 6.68027 6.73386 6.98738 7.24507 7.36712 7.59370 7.68553 7.80372 7.83304 8.45976 9.23919 9.87234 10.45986 11.33468 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.004083 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.707521 B = 6856.845293 C = 8435.778862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.468 3.532 4 O -0.476 6.476 5 C 0.134 3.866 6 H 0.082 0.918 7 C -0.068 4.068 8 C -0.097 4.097 9 C -0.112 4.112 10 C -0.107 4.107 11 C -0.038 4.038 12 Cl -0.069 7.069 13 C -0.072 4.072 14 N -0.511 5.511 15 C 0.036 3.964 16 C 0.181 3.819 17 N -0.596 5.596 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.154 3.846 27 C 0.031 3.969 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.029 0.971 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.091 0.909 39 H 0.254 0.746 40 H 0.028 0.972 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 -19.164 -3.887 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.361 6.361 5 C 0.024 3.976 6 H 0.099 0.901 7 C -0.069 4.069 8 C -0.115 4.115 9 C -0.130 4.130 10 C -0.126 4.126 11 C -0.064 4.064 12 Cl -0.041 7.041 13 C -0.091 4.091 14 N -0.237 5.237 15 C -0.092 4.092 16 C 0.055 3.945 17 N -0.319 5.319 18 C -0.381 4.381 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.027 3.973 27 C -0.098 4.098 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.165 0.835 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.087 -18.439 -4.504 21.044 hybrid contribution 0.873 0.146 1.087 1.402 sum -8.214 -18.293 -3.417 20.341 Atomic orbital electron populations 1.23236 0.76494 1.03431 1.02591 1.86499 1.23214 1.33509 1.84384 1.23460 0.91366 0.81431 0.72870 1.90638 1.66428 1.35793 1.43203 1.20046 0.87371 0.93405 0.96800 0.90051 1.19249 1.00170 0.94167 0.93268 1.21095 0.97373 0.93826 0.99215 1.20998 1.00131 1.00134 0.91758 1.21077 0.99620 0.93065 0.98832 1.20910 1.03937 0.93956 0.87615 1.98378 1.97268 1.78595 1.29817 1.21097 0.97216 1.00832 0.89967 1.61859 1.13655 1.06364 1.41830 1.23050 0.84236 1.02543 0.99396 1.20846 0.99329 0.83913 0.90394 1.44161 1.02451 1.47464 1.37808 1.19206 1.05156 1.19949 0.93784 0.91626 1.25010 1.00652 0.98631 0.95361 1.70027 1.27415 1.47880 1.09415 0.86296 0.81865 0.78547 0.80105 1.21544 1.21766 1.20505 1.20918 0.86713 0.90959 0.98697 1.22989 1.00182 0.97779 0.88817 0.88277 0.91941 0.91893 0.85260 0.84985 0.85063 0.83522 0.95298 0.91543 0.95419 0.89119 0.93626 0.95380 0.92576 0.89565 0.95653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.40 10.48 -39.25 -0.41 -4.81 16 3 C 0.47 6.86 6.90 36.00 0.25 7.11 16 4 O -0.48 -8.19 13.61 -18.75 -0.26 -8.44 16 5 C 0.13 1.94 2.19 -70.02 -0.15 1.79 16 6 H 0.08 1.08 8.00 -51.93 -0.42 0.66 16 7 C -0.07 -0.90 3.57 -104.63 -0.37 -1.27 16 8 C -0.10 -1.03 9.67 -39.58 -0.38 -1.42 16 9 C -0.11 -1.07 10.04 -39.59 -0.40 -1.46 16 10 C -0.11 -1.13 9.83 -39.55 -0.39 -1.52 16 11 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 12 Cl -0.07 -0.89 28.96 -51.86 -1.50 -2.39 16 13 C -0.07 -1.04 7.92 -39.54 -0.31 -1.35 16 14 N -0.51 -9.13 3.65 -229.13 -0.84 -9.97 16 15 C 0.04 0.69 5.23 -3.70 -0.02 0.67 16 16 C 0.18 4.38 5.42 -3.60 -0.02 4.36 16 17 N -0.60 -15.22 3.04 -172.01 -0.52 -15.74 16 18 C -0.25 -6.96 9.63 -15.06 -0.15 -7.11 16 19 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 20 C 0.00 0.05 4.93 -17.43 -0.09 -0.03 16 21 N -0.90 -26.34 11.15 55.49 0.62 -25.72 16 22 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.15 3.41 6.69 -3.60 -0.02 3.38 16 27 C 0.03 0.58 5.22 -3.70 -0.02 0.56 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.13 1.12 8.04 -52.49 -0.42 0.70 16 32 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 33 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.15 2.41 7.72 -52.49 -0.41 2.00 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 1.19 5.94 -51.93 -0.31 0.88 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 2.42 6.12 -51.93 -0.32 2.11 16 39 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 1.20 7.95 -51.93 -0.41 0.78 16 42 H 0.09 1.57 5.24 -51.93 -0.27 1.30 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -31.33 364.24 -9.61 -40.95 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.91 Total: -0.50 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.26 Total: 4.38 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.74 Total: -51.44 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.67 Total: -13.25 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.33 -9.61 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342628407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.285 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds