Wall clock time and date at job start Tue Mar 31 2020 20:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 117.00037 * 2 1 4 4 O 1.20824 * 120.00378 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00044 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46977 * 300.00843 * 5 3 2 7 7 C 1.50699 * 109.47041 * 59.99983 * 5 3 2 8 8 C 1.38261 * 120.00008 * 260.00309 * 7 5 3 9 9 C 1.38214 * 120.02970 * 179.72309 * 8 7 5 10 10 C 1.38233 * 120.01234 * 0.02562 * 9 8 7 11 11 C 1.38326 * 119.99084 * 0.02562 * 10 9 8 12 12 Cl 1.73600 * 120.01788 * 179.97438 * 11 10 9 13 13 C 1.38194 * 119.98718 * 79.72761 * 7 5 3 14 14 N 1.46897 * 109.47556 * 180.02562 * 5 3 2 15 15 C 1.46900 * 111.00393 * 184.30543 * 14 5 3 16 16 C 1.53238 * 109.34245 * 172.74467 * 15 14 5 17 17 N 1.47079 * 108.52040 * 53.82614 * 16 15 14 18 18 C 1.36940 * 120.87993 * 128.84069 * 17 16 15 19 19 H 1.08002 * 119.99607 * 206.56186 * 18 17 16 20 20 C 1.38805 * 119.99945 * 26.55937 * 18 17 16 21 21 N 1.31621 * 120.00058 * 17.02420 * 20 18 17 22 22 Si 1.86799 * 120.00059 * 197.01790 * 20 18 17 23 23 H 1.48497 * 109.47107 * 90.00227 * 22 20 18 24 24 H 1.48507 * 109.47284 * 210.00458 * 22 20 18 25 25 H 1.48502 * 109.46878 * 330.00082 * 22 20 18 26 26 C 1.47081 * 118.23795 * 308.81361 * 17 16 15 27 27 C 1.46897 * 111.00080 * 59.99578 * 14 5 3 28 28 H 1.08991 * 109.47369 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46971 * 300.00043 * 1 2 3 30 30 H 1.09009 * 109.46759 * 59.99384 * 1 2 3 31 31 H 1.08001 * 119.98198 * 359.74131 * 8 7 5 32 32 H 1.08007 * 119.99338 * 180.02562 * 9 8 7 33 33 H 1.08005 * 120.00941 * 179.97438 * 10 9 8 34 34 H 1.07997 * 120.01149 * 0.27792 * 13 7 5 35 35 H 1.08999 * 109.48944 * 292.70216 * 15 14 5 36 36 H 1.08999 * 109.49485 * 52.77793 * 15 14 5 37 37 H 1.09003 * 109.62241 * 294.11614 * 16 15 14 38 38 H 1.08996 * 109.62956 * 173.53646 * 16 15 14 39 39 H 0.97001 * 120.00083 * 180.02562 * 21 20 18 40 40 H 1.08999 * 109.63162 * 291.47675 * 26 17 16 41 41 H 1.09002 * 109.62831 * 170.89635 * 26 17 16 42 42 H 1.09000 * 109.49370 * 307.21637 * 27 14 5 43 43 H 1.09001 * 109.49276 * 67.30103 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7804 0.8891 7 6 4.1047 0.5919 -1.2314 8 6 4.5992 -0.6964 -1.1467 9 6 5.0878 -1.3254 -2.2763 10 6 5.0828 -0.6664 -3.4914 11 6 4.5891 0.6229 -3.5767 12 17 4.5831 1.4514 -5.1023 13 6 4.0986 1.2516 -2.4457 14 7 3.9830 2.6835 0.0002 15 6 5.4436 2.8006 -0.1033 16 6 5.8232 4.2745 -0.2816 17 7 5.2129 5.0494 0.8094 18 6 5.9642 5.9065 1.5685 19 1 5.6653 6.1344 2.5810 20 6 7.1098 6.4821 1.0366 21 7 7.3008 6.4857 -0.2657 22 14 8.3803 7.2520 2.1690 23 1 9.3788 6.2258 2.5629 24 1 9.0655 8.3634 1.4614 25 1 7.7067 7.7789 3.3831 26 6 3.7741 4.8798 1.0631 27 6 3.4751 3.3820 1.1884 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 4.6034 -1.2116 -0.1975 32 1 5.4736 -2.3320 -2.2095 33 1 5.4650 -1.1579 -4.3740 34 1 3.7124 2.2580 -2.5118 35 1 5.9048 2.4136 0.8053 36 1 5.7945 2.2282 -0.9620 37 1 5.4502 4.6352 -1.2402 38 1 6.9074 4.3805 -0.2440 39 1 8.1016 6.8877 -0.6373 40 1 3.2041 5.2988 0.2338 41 1 3.5035 5.3860 1.9897 42 1 2.3984 3.2313 1.2665 43 1 3.9637 2.9870 2.0791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342628407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:44 Heat of formation + Delta-G solvation = -32.599238 kcal Electronic energy + Delta-G solvation = -27983.130823 eV Core-core repulsion = 24055.109410 eV Total energy + Delta-G solvation = -3928.021414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03399 -40.38964 -39.36341 -37.56010 -37.44749 -36.21864 -33.89441 -32.18762 -31.85959 -31.55371 -29.60127 -28.46119 -26.72854 -24.58772 -24.38320 -23.64257 -23.07082 -21.57277 -20.87753 -18.94542 -18.58140 -18.11990 -17.80986 -17.28776 -17.03297 -16.56375 -16.40463 -15.81353 -15.57515 -15.34422 -15.29378 -14.99296 -14.79524 -14.60652 -14.41476 -14.29073 -14.03860 -13.45890 -13.22316 -13.01057 -12.98311 -12.63815 -12.59680 -12.46853 -12.39969 -12.34085 -12.18022 -11.99245 -11.86859 -11.84238 -11.72304 -11.46835 -11.17464 -10.59211 -9.85630 -9.66883 -9.42027 -8.70950 -7.87533 -5.32912 0.11397 0.27689 1.08014 1.18848 1.47522 1.48059 1.54225 1.57786 2.50537 2.56694 2.94137 3.27743 3.40526 3.66133 3.78699 3.87702 4.01072 4.16333 4.21967 4.27503 4.31361 4.32301 4.34383 4.48840 4.54136 4.55960 4.67276 4.70185 4.71760 4.83290 4.93786 4.99223 5.13163 5.26500 5.32081 5.33514 5.36417 5.44959 5.60723 5.65648 5.81660 5.99879 6.04031 6.36183 6.70865 7.12510 7.81874 8.37439 9.19504 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.004083 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.707521 B = 6856.845293 C = 8435.778862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.473 3.527 4 O -0.511 6.511 5 C 0.135 3.865 6 H 0.106 0.894 7 C -0.081 4.081 8 C -0.090 4.090 9 C -0.099 4.099 10 C -0.103 4.103 11 C -0.052 4.052 12 Cl -0.081 7.081 13 C -0.094 4.094 14 N -0.525 5.525 15 C 0.060 3.940 16 C 0.190 3.810 17 N -0.611 5.611 18 C -0.265 4.265 19 H 0.068 0.932 20 C -0.049 4.049 21 N -0.936 5.936 22 Si 0.970 3.030 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.151 3.849 27 C 0.047 3.953 28 H 0.137 0.863 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.158 0.842 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.113 0.887 35 H 0.032 0.968 36 H 0.081 0.919 37 H -0.007 1.007 38 H 0.062 0.938 39 H 0.250 0.750 40 H 0.007 0.993 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.589 -22.635 -2.697 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.315 3.685 4 O -0.398 6.398 5 C 0.026 3.974 6 H 0.123 0.877 7 C -0.082 4.082 8 C -0.108 4.108 9 C -0.116 4.116 10 C -0.122 4.122 11 C -0.078 4.078 12 Cl -0.052 7.052 13 C -0.113 4.113 14 N -0.251 5.251 15 C -0.068 4.068 16 C 0.064 3.936 17 N -0.335 5.335 18 C -0.395 4.395 19 H 0.086 0.914 20 C -0.244 4.244 21 N -0.582 5.582 22 Si 0.798 3.202 23 H -0.209 1.209 24 H -0.222 1.222 25 H -0.194 1.194 26 C 0.025 3.975 27 C -0.082 4.082 28 H 0.155 0.845 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.176 0.824 32 H 0.190 0.810 33 H 0.172 0.828 34 H 0.131 0.869 35 H 0.050 0.950 36 H 0.099 0.901 37 H 0.011 0.989 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.025 0.975 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.929 -21.949 -3.304 23.925 hybrid contribution 0.702 1.155 0.656 1.503 sum -8.228 -20.794 -2.648 22.519 Atomic orbital electron populations 1.23566 0.74594 1.05833 1.02391 1.86477 1.24956 1.31795 1.83660 1.23460 0.91405 0.81663 0.71927 1.90626 1.67119 1.37035 1.45065 1.20066 0.87692 0.91043 0.98582 0.87684 1.19219 1.01599 0.95424 0.91983 1.21433 0.95853 0.92505 1.01013 1.21460 0.98271 1.01420 0.90475 1.21429 0.98391 0.91884 1.00459 1.21050 1.04959 0.95008 0.86803 1.98369 1.97370 1.79105 1.30363 1.20885 0.99081 0.99914 0.91466 1.61625 1.12507 1.09377 1.41586 1.22596 0.85433 0.98737 1.00067 1.20575 0.97342 0.87047 0.88621 1.44423 1.03753 1.47611 1.37757 1.19550 1.05682 1.20125 0.94168 0.91381 1.25798 1.02466 0.99508 0.96653 1.70202 1.27740 1.49036 1.11186 0.85228 0.79181 0.77448 0.78340 1.20898 1.22239 1.19398 1.21002 0.84775 0.93735 0.97976 1.22722 1.00789 0.95235 0.89426 0.84538 0.91801 0.92554 0.82403 0.81011 0.82788 0.86918 0.94968 0.90105 0.98872 0.92003 0.94050 0.97489 0.92097 0.88609 0.95018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.66 16 2 O -0.35 -7.79 10.48 -51.38 -0.54 -8.33 16 3 C 0.47 13.29 6.90 71.24 0.49 13.78 16 4 O -0.51 -17.55 13.61 21.97 0.30 -17.25 16 5 C 0.14 3.73 2.19 43.42 0.10 3.83 16 6 H 0.11 2.43 8.00 -2.39 -0.02 2.41 16 7 C -0.08 -2.01 3.57 -19.87 -0.07 -2.09 16 8 C -0.09 -1.56 9.67 22.27 0.22 -1.35 16 9 C -0.10 -1.42 10.04 22.26 0.22 -1.20 16 10 C -0.10 -1.87 9.83 22.29 0.22 -1.65 16 11 C -0.05 -1.29 6.32 22.33 0.14 -1.15 16 12 Cl -0.08 -2.11 28.96 -2.72 -0.08 -2.19 16 13 C -0.09 -2.71 7.92 22.29 0.18 -2.53 16 14 N -0.52 -18.83 3.65 -878.84 -3.20 -22.03 16 15 C 0.06 2.33 5.23 86.38 0.45 2.79 16 16 C 0.19 9.62 5.42 86.35 0.47 10.09 16 17 N -0.61 -32.30 3.04 -698.12 -2.12 -34.42 16 18 C -0.27 -15.00 9.63 84.03 0.81 -14.19 16 19 H 0.07 3.74 7.88 -2.91 -0.02 3.71 16 20 C -0.05 -2.78 4.93 84.86 0.42 -2.36 16 21 N -0.94 -56.58 11.15 21.65 0.24 -56.34 16 22 Si 0.97 45.41 29.59 68.60 2.03 47.44 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 C 0.15 6.90 6.69 86.35 0.58 7.47 16 27 C 0.05 1.76 5.22 86.38 0.45 2.21 16 28 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.02 8.13 -2.38 -0.02 1.00 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.16 1.86 8.04 -2.91 -0.02 1.84 16 32 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.11 3.96 7.72 -2.91 -0.02 3.94 16 35 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 2.90 5.94 -2.39 -0.01 2.89 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 38 H 0.06 3.46 6.12 -2.39 -0.01 3.45 16 39 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.06 2.66 7.95 -2.39 -0.02 2.64 16 42 H 0.10 3.47 5.24 -2.39 -0.01 3.46 16 43 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -71.27 364.24 3.51 -67.76 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.02 Total: 10.04 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.87 Total: 15.32 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -5.08 Total: -112.79 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.24 Total: -25.58 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.08 Total: -2.19 kcal Total: -71.27 3.51 -67.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342628407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.161 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds