Wall clock time and date at job start Tue Mar 31 2020 20:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99921 * 2 1 4 4 H 1.48504 * 109.47106 * 239.99360 * 3 2 1 5 5 H 1.48503 * 109.47400 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47152 * 119.99665 * 3 2 1 7 7 C 1.37877 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00404 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99859 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47238 * 179.97438 * 9 7 2 11 11 C 1.46507 * 120.00289 * 95.89975 * 10 9 7 12 12 C 1.50702 * 109.46713 * 90.00372 * 11 10 9 13 13 C 1.38677 * 120.41537 * 269.72343 * 12 11 10 14 14 C 1.38627 * 118.41618 * 179.78763 * 13 12 11 15 15 C 1.38230 * 119.16232 * 0.50611 * 14 13 12 16 16 N 1.31851 * 120.75955 * 359.73500 * 15 14 13 17 17 C 1.31877 * 121.72905 * 359.97438 * 16 15 14 18 18 C 1.34780 * 120.00319 * 275.63424 * 10 9 7 19 19 O 1.21512 * 120.00384 * 185.31325 * 18 10 9 20 20 C 1.48123 * 119.99479 * 5.30444 * 18 10 9 21 21 C 1.39821 * 119.37403 * 186.05570 * 20 18 10 22 22 C 1.36969 * 119.60769 * 179.73633 * 21 20 18 23 23 C 1.39807 * 118.25116 * 0.55942 * 22 21 20 24 24 N 1.34655 * 135.00339 * 179.72749 * 23 22 21 25 25 N 1.28672 * 109.15866 * 179.97438 * 24 23 22 26 26 N 1.28763 * 111.84674 * 359.97438 * 25 24 23 27 27 H 0.97001 * 125.86193 * 180.02562 * 26 25 24 28 28 C 1.37252 * 108.28406 * 0.02562 * 26 25 24 29 29 N 1.31950 * 134.70856 * 179.97438 * 28 26 25 30 30 H 0.96997 * 119.99819 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47401 * 60.00204 * 9 7 2 32 32 H 1.08997 * 109.47300 * 299.99751 * 9 7 2 33 33 H 1.08997 * 109.47314 * 210.00603 * 11 10 9 34 34 H 1.08999 * 109.46777 * 330.00349 * 11 10 9 35 35 H 1.07996 * 120.79090 * 0.02562 * 13 12 11 36 36 H 1.08003 * 120.41555 * 180.21988 * 14 13 12 37 37 H 1.07999 * 119.61940 * 179.74799 * 15 14 13 38 38 H 1.08006 * 119.61689 * 180.02562 * 17 16 15 39 39 H 1.08007 * 120.19492 * 0.02562 * 21 20 18 40 40 H 1.07998 * 120.86888 * 180.22663 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.5798 -4.2543 1.2626 12 6 1.6348 -5.3927 1.5491 13 6 0.4776 -5.1769 2.2823 14 6 -0.3644 -6.2527 2.5177 15 6 -0.0198 -7.4979 2.0263 16 7 1.0915 -7.6670 1.3371 17 6 1.9130 -6.6656 1.0892 18 6 2.7280 -4.0505 -1.1610 19 8 3.4415 -5.0341 -1.1728 20 6 2.4350 -3.3328 -2.4232 21 6 2.8796 -3.8684 -3.6358 22 6 2.6067 -3.2115 -4.8063 23 6 1.8953 -2.0098 -4.7404 24 7 1.4596 -1.1104 -5.6429 25 7 0.8411 -0.1630 -5.0302 26 7 0.8201 -0.3497 -3.7563 27 1 0.4085 0.2370 -3.1027 28 6 1.4800 -1.5215 -3.4820 29 7 1.7615 -2.1926 -2.3813 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8896 32 1 0.6241 -2.5567 0.8903 33 1 3.5974 -4.6373 1.1858 34 1 2.5262 -3.5252 2.0710 35 1 0.2363 -4.1935 2.6577 36 1 -1.2758 -6.1205 3.0818 37 1 -0.6684 -8.3420 2.2088 38 1 2.8140 -6.8426 0.5207 39 1 3.4310 -4.7971 -3.6498 40 1 2.9372 -3.6087 -5.7547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347030117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:48 Heat of formation + Delta-G solvation = 138.232429 kcal Electronic energy + Delta-G solvation = -29117.082711 eV Core-core repulsion = 25127.654371 eV Total energy + Delta-G solvation = -3989.428339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.39456 -41.54868 -40.79817 -39.25328 -37.03969 -35.27632 -34.67645 -33.58713 -32.84382 -32.53763 -31.76687 -29.25721 -27.91904 -26.25769 -25.02718 -24.72171 -24.29809 -23.64720 -23.13337 -21.03885 -19.77882 -19.38973 -18.66795 -18.28315 -17.85929 -17.58744 -17.15156 -17.10809 -16.51972 -16.44115 -16.13074 -15.62579 -15.20747 -14.64473 -14.58594 -14.41126 -14.22953 -14.09030 -13.92377 -13.76472 -13.55889 -13.37029 -13.12471 -12.93548 -12.83573 -12.70062 -12.49125 -12.46905 -12.12348 -11.69497 -11.27244 -10.73503 -10.56000 -10.43165 -10.27738 -10.12829 -10.03175 -9.81051 -9.48011 -8.08713 -6.09916 -0.87339 -0.00871 0.15898 0.37164 1.04945 1.18467 1.32861 1.39600 1.42838 1.74307 2.17289 2.41094 2.68095 2.76327 2.96288 3.20115 3.26081 3.36277 3.57884 3.64088 3.83750 3.93456 3.94528 4.12400 4.14389 4.37664 4.37849 4.50702 4.70659 4.76591 4.81974 4.87874 4.92060 4.95444 5.23475 5.30306 5.38984 5.46240 5.55116 5.79134 5.82170 5.84722 6.22771 6.43952 6.53906 6.90824 7.02557 7.05133 7.19497 7.49602 8.97734 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010805 B = 0.004769 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.783470 B = 5870.254336 C = 7455.119296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.040 3.960 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.480 4.480 8 H 0.039 0.961 9 C 0.261 3.739 10 N -0.574 5.574 11 C 0.160 3.840 12 C -0.157 4.157 13 C -0.068 4.068 14 C -0.171 4.171 15 C 0.088 3.912 16 N -0.513 5.513 17 C 0.107 3.893 18 C 0.565 3.435 19 O -0.560 6.560 20 C 0.111 3.889 21 C -0.113 4.113 22 C -0.006 4.006 23 C -0.038 4.038 24 N -0.257 5.257 25 N -0.005 5.005 26 N -0.392 5.392 27 H 0.462 0.538 28 C 0.195 3.805 29 N -0.384 5.384 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.017 0.983 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.184 0.816 38 H 0.153 0.847 39 H 0.183 0.817 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -8.255 -0.400 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.140 3.860 10 N -0.302 5.302 11 C 0.037 3.963 12 C -0.161 4.161 13 C -0.094 4.094 14 C -0.190 4.190 15 C -0.069 4.069 16 N -0.222 5.222 17 C -0.049 4.049 18 C 0.352 3.648 19 O -0.440 6.440 20 C -0.043 4.043 21 C -0.137 4.137 22 C -0.036 4.036 23 C -0.166 4.166 24 N -0.134 5.134 25 N 0.011 4.989 26 N -0.124 5.124 27 H 0.311 0.689 28 C -0.049 4.049 29 N -0.100 5.100 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.201 0.799 38 H 0.170 0.830 39 H 0.200 0.800 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.065 -8.152 -1.114 8.228 hybrid contribution 0.345 1.948 1.046 2.237 sum 0.410 -6.205 -0.068 6.218 Atomic orbital electron populations 1.69991 1.06080 1.27052 1.52211 1.25072 0.95049 0.99731 0.96088 0.86321 0.79099 0.82062 0.78301 1.21493 1.20528 1.20238 1.21246 0.92206 0.91249 1.47254 0.94287 1.19417 0.87213 0.82016 0.97308 1.48234 1.43443 1.33275 1.05203 1.20325 0.97227 0.92526 0.86210 1.21256 0.98254 0.96405 1.00136 1.21813 0.92547 1.00306 0.94778 1.22453 1.01528 0.93251 1.01773 1.23317 0.93127 0.97881 0.92529 1.67723 1.05180 1.34916 1.14362 1.22778 0.98346 0.88189 0.95627 1.17934 0.80268 0.83182 0.83382 1.90674 1.40246 1.26577 1.86514 1.21393 0.96701 0.90944 0.95297 1.21888 0.99582 1.02273 0.89920 1.20761 0.92956 0.88890 1.00990 1.21123 1.05011 0.99851 0.90603 1.75268 1.12497 1.00302 1.25294 1.77967 1.13591 1.18731 0.88582 1.44758 1.41919 1.18330 1.07384 0.68928 1.20302 1.00635 0.91491 0.92483 1.67597 1.10297 1.05199 1.26861 0.92797 0.93452 0.96489 0.89066 0.88550 0.84239 0.81843 0.79946 0.83007 0.80009 0.78796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.57 13.29 21.45 0.28 -44.29 16 2 C 0.04 1.89 5.46 84.65 0.46 2.35 16 3 Si 0.91 39.23 29.54 68.60 2.03 41.25 16 4 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.48 -22.63 7.35 25.60 0.19 -22.45 16 8 H 0.04 1.94 7.81 -2.91 -0.02 1.91 16 9 C 0.26 11.36 4.75 85.63 0.41 11.76 16 10 N -0.57 -21.86 2.46 -833.61 -2.05 -23.90 16 11 C 0.16 5.16 5.49 85.63 0.47 5.63 16 12 C -0.16 -4.77 5.48 -19.77 -0.11 -4.87 16 13 C -0.07 -1.84 9.86 22.47 0.22 -1.62 16 14 C -0.17 -3.84 10.11 22.36 0.23 -3.61 16 15 C 0.09 2.09 11.18 84.69 0.95 3.04 16 16 N -0.51 -15.30 10.36 -195.85 -2.03 -17.33 16 17 C 0.11 3.33 10.73 84.67 0.91 4.24 16 18 C 0.57 21.45 7.60 86.87 0.66 22.11 16 19 O -0.56 -21.09 15.14 -3.75 -0.06 -21.15 16 20 C 0.11 4.05 6.56 42.05 0.28 4.33 16 21 C -0.11 -3.16 9.55 22.35 0.21 -2.95 16 22 C -0.01 -0.14 10.16 22.35 0.23 0.08 16 23 C -0.04 -1.25 7.38 39.82 0.29 -0.95 16 24 N -0.26 -8.77 12.43 -52.29 -0.65 -9.42 16 25 N -0.01 -0.19 13.28 37.02 0.49 0.30 16 26 N -0.39 -14.17 7.06 -55.42 -0.39 -14.56 16 27 H 0.46 16.26 8.96 -219.84 -1.97 14.29 16 28 C 0.19 7.41 8.56 134.30 1.15 8.56 16 29 N -0.38 -15.46 4.72 -182.09 -0.86 -16.32 16 30 H 0.26 12.39 8.31 -92.71 -0.77 11.62 16 31 H 0.05 2.26 5.77 -2.39 -0.01 2.25 16 32 H 0.02 0.78 8.03 -2.39 -0.02 0.76 16 33 H 0.09 2.83 7.46 -2.39 -0.02 2.82 16 34 H 0.10 2.98 8.02 -2.39 -0.02 2.96 16 35 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 36 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.15 4.82 7.38 -2.91 -0.02 4.80 16 39 H 0.18 4.16 7.62 -2.91 -0.02 4.13 16 40 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -58.71 351.42 2.46 -56.25 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.85 Total: 23.52 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 6.54 Total: 25.64 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -5.20 Total: -125.52 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.06 Total: -21.15 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.25 kcal Total: -58.71 2.46 -56.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347030117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.483 kcal (2) G-P(sol) polarization free energy of solvation -58.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds