Wall clock time and date at job start Tue Mar 31 2020 20:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 116.99679 * 2 1 4 4 O 1.20823 * 120.00065 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99770 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46653 * 179.97438 * 5 3 2 7 7 C 1.37095 * 120.00429 * 264.05247 * 6 5 3 8 8 H 1.07996 * 120.00405 * 197.63074 * 7 6 5 9 9 C 1.38951 * 119.99915 * 17.63784 * 7 6 5 10 10 N 1.31411 * 119.99746 * 19.76985 * 9 7 6 11 11 Si 1.86795 * 120.00128 * 199.78245 * 9 7 6 12 12 H 1.48495 * 109.47625 * 89.99645 * 11 9 7 13 13 H 1.48498 * 109.46991 * 209.99639 * 11 9 7 14 14 H 1.48504 * 109.47082 * 329.98972 * 11 9 7 15 15 C 1.34777 * 119.99565 * 84.06217 * 6 5 3 16 16 O 1.21290 * 120.00307 * 359.97438 * 15 6 5 17 17 C 1.50702 * 119.99796 * 179.71845 * 15 6 5 18 18 H 1.09002 * 110.63244 * 303.38305 * 17 15 6 19 19 C 1.55140 * 110.70388 * 66.67401 * 17 15 6 20 20 C 1.54913 * 101.65479 * 154.03530 * 19 17 15 21 21 N 1.47845 * 104.79362 * 322.93243 * 20 19 17 22 22 C 1.46902 * 111.00038 * 146.36192 * 21 20 19 23 23 C 1.52997 * 109.47391 * 69.15497 * 22 21 20 24 24 F 1.39908 * 109.46891 * 59.99979 * 23 22 21 25 25 F 1.39894 * 109.47187 * 179.97438 * 23 22 21 26 26 F 1.39899 * 109.46994 * 300.00671 * 23 22 21 27 27 C 1.47451 * 108.56965 * 24.09281 * 21 20 19 28 28 H 1.09004 * 109.47293 * 299.99909 * 1 2 3 29 29 H 1.08997 * 109.47471 * 60.00425 * 1 2 3 30 30 H 1.09003 * 109.46975 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46920 * 59.99859 * 5 3 2 32 32 H 1.08997 * 109.46957 * 299.99600 * 5 3 2 33 33 H 0.97006 * 120.00190 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.99402 * 272.12621 * 19 17 15 35 35 H 1.09006 * 110.99243 * 35.94877 * 19 17 15 36 36 H 1.08999 * 110.37688 * 204.10453 * 20 19 17 37 37 H 1.08997 * 110.37117 * 81.75846 * 20 19 17 38 38 H 1.09004 * 109.46936 * 189.15869 * 22 21 20 39 39 H 1.09001 * 109.46940 * 309.15221 * 22 21 20 40 40 H 1.08992 * 109.89003 * 239.60780 * 27 21 20 41 41 H 1.08999 * 110.01923 * 118.48787 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 4.2933 3.3021 -1.1822 8 1 4.8610 4.2208 -1.1751 9 6 3.8789 2.7509 -2.3885 10 7 2.8901 1.8856 -2.4101 11 14 4.7274 3.2395 -3.9792 12 1 5.8656 2.3210 -4.2356 13 1 3.7600 3.1545 -5.1026 14 1 5.2310 4.6318 -3.8641 15 6 4.0571 3.3605 1.1597 16 8 3.7810 2.8101 2.2047 17 6 4.4904 4.8039 1.1599 18 1 5.4689 4.9113 0.6918 19 6 3.4370 5.6929 0.4479 20 6 3.6816 7.0671 1.1198 21 7 3.9922 6.7480 2.5296 22 6 4.9641 7.7004 3.0831 23 6 4.3063 9.0741 3.2282 24 9 3.2073 8.9764 4.0884 25 9 5.2317 9.9809 3.7558 26 9 3.8781 9.5208 1.9735 27 6 4.5077 5.3682 2.5962 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9556 0.7810 -0.8908 32 1 3.9563 0.7807 0.8892 33 1 2.6009 1.5005 -3.2522 34 1 3.6286 5.7428 -0.6240 35 1 2.4264 5.3357 0.6462 36 1 2.7851 7.6841 1.0591 37 1 4.5248 7.5740 0.6509 38 1 5.2977 7.3522 4.0607 39 1 5.8204 7.7764 2.4130 40 1 3.8683 4.7640 3.2396 41 1 5.5272 5.3689 2.9819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348279164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:13 Heat of formation + Delta-G solvation = -250.843971 kcal Electronic energy + Delta-G solvation = -31105.125816 eV Core-core repulsion = 26185.074695 eV Total energy + Delta-G solvation = -4920.051120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.05775 -47.62867 -47.47608 -39.79874 -39.03893 -37.64782 -35.44522 -34.66198 -32.68271 -31.63216 -29.07264 -28.60549 -27.69846 -26.19484 -24.84996 -23.18207 -21.73579 -20.95969 -20.07264 -19.13447 -18.53010 -18.39356 -17.54238 -17.20966 -16.63480 -16.40770 -15.60089 -15.33653 -15.26680 -14.76205 -14.62596 -14.44907 -14.31596 -14.01849 -13.96669 -13.91081 -13.71310 -13.64920 -13.55252 -13.00849 -12.59267 -12.55033 -12.47649 -12.14283 -11.79961 -11.66766 -11.38530 -11.34281 -11.26279 -10.97709 -10.84001 -10.67393 -10.56026 -10.45598 -10.29292 -9.82789 -9.61147 -9.06206 -8.67388 -8.36921 -8.03215 -6.57512 -4.07852 2.71963 3.01396 3.12553 3.14979 3.42290 3.60647 3.67362 3.84428 3.92712 4.02434 4.03892 4.46741 4.52506 4.82738 4.95718 5.01447 5.11114 5.29697 5.49983 5.51834 5.68968 5.77249 5.82401 5.87065 5.94215 6.02792 6.17608 6.26245 6.39305 6.42286 6.56212 6.64189 6.77768 6.89726 6.93294 7.25977 7.42861 7.54184 8.14769 8.89588 9.08393 9.27875 9.68170 10.49772 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.003553 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.578675 B = 7879.791363 C = 9022.788245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.498 6.498 5 C 0.157 3.843 6 N -0.426 5.426 7 C -0.334 4.334 8 H 0.105 0.895 9 C 0.039 3.961 10 N -0.867 5.867 11 Si 0.924 3.076 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.480 3.520 16 O -0.599 6.599 17 C -0.107 4.107 18 H 0.090 0.910 19 C -0.103 4.103 20 C 0.032 3.968 21 N -0.523 5.523 22 C 0.004 3.996 23 C 0.457 3.543 24 F -0.174 7.174 25 F -0.189 7.189 26 F -0.183 7.183 27 C 0.060 3.940 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.273 0.727 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 6.093 4.658 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.326 3.674 4 O -0.382 6.382 5 C 0.031 3.969 6 N -0.144 5.144 7 C -0.461 4.461 8 H 0.122 0.878 9 C -0.167 4.167 10 N -0.505 5.505 11 Si 0.751 3.249 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.194 1.194 15 C 0.269 3.731 16 O -0.485 6.485 17 C -0.129 4.129 18 H 0.108 0.892 19 C -0.141 4.141 20 C -0.095 4.095 21 N -0.248 5.248 22 C -0.127 4.127 23 C 0.402 3.598 24 F -0.156 7.156 25 F -0.171 7.171 26 F -0.164 7.164 27 C -0.067 4.067 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.135 0.865 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.939 6.084 5.307 8.592 hybrid contribution 0.643 0.498 -1.609 1.803 sum 3.583 6.581 3.698 8.356 Atomic orbital electron populations 1.22927 0.78690 1.01787 1.01646 1.86452 1.21693 1.35528 1.85725 1.23909 0.92241 0.80585 0.70665 1.90513 1.66453 1.36332 1.44940 1.20466 0.87331 0.85587 1.03502 1.43349 1.56911 1.07966 1.06140 1.19611 1.33876 1.10462 0.82192 0.87785 1.25210 0.94760 0.97056 0.99629 1.69817 1.22579 1.30069 1.28037 0.85966 0.78965 0.79107 0.80874 1.20192 1.20974 1.19426 1.19794 0.82030 0.87496 0.83753 1.90533 1.55852 1.70042 1.32066 1.22099 1.00439 0.94314 0.96012 0.89182 1.22608 0.99761 0.91452 1.00329 1.23409 1.01127 0.98681 0.86266 1.63648 1.38896 1.02340 1.19881 1.23440 0.94876 0.89310 1.05029 1.20523 0.77217 0.88236 0.73797 1.93201 1.55525 1.96360 1.70491 1.93165 1.66339 1.70650 1.86898 1.93177 1.90522 1.91019 1.41728 1.22785 0.99702 0.86665 0.97542 0.93139 0.92624 0.89641 0.85959 0.90112 0.91633 0.89014 0.90053 0.89702 0.93063 0.86498 0.90227 0.87642 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.55 101.05 1.07 1.83 16 2 O -0.38 -8.01 10.57 -39.26 -0.41 -8.43 16 3 C 0.48 11.74 6.11 36.01 0.22 11.96 16 4 O -0.50 -13.49 15.75 -18.75 -0.30 -13.78 16 5 C 0.16 3.62 5.14 -5.19 -0.03 3.59 16 6 N -0.43 -10.03 2.18 -116.10 -0.25 -10.28 16 7 C -0.33 -7.73 8.14 -14.93 -0.12 -7.85 16 8 H 0.10 2.24 5.62 -52.49 -0.29 1.95 16 9 C 0.04 0.90 4.91 -17.47 -0.09 0.82 16 10 N -0.87 -21.47 9.18 55.50 0.51 -20.96 16 11 Si 0.92 18.29 29.60 -169.99 -5.03 13.26 16 12 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 13 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 14 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 15 C 0.48 10.93 6.80 -10.98 -0.07 10.85 16 16 O -0.60 -14.94 15.10 5.55 0.08 -14.86 16 17 C -0.11 -1.95 2.35 -89.95 -0.21 -2.16 16 18 H 0.09 1.51 7.56 -51.93 -0.39 1.12 16 19 C -0.10 -1.85 5.72 -24.59 -0.14 -1.99 16 20 C 0.03 0.48 5.08 -2.29 -0.01 0.46 16 21 N -0.52 -7.67 5.09 -231.24 -1.18 -8.85 16 22 C 0.00 0.04 4.69 -3.82 -0.02 0.03 16 23 C 0.46 5.53 3.26 37.16 0.12 5.65 16 24 F -0.17 -2.39 17.24 2.25 0.04 -2.35 16 25 F -0.19 -2.17 17.32 2.25 0.04 -2.13 16 26 F -0.18 -2.38 14.70 2.25 0.03 -2.35 16 27 C 0.06 0.96 6.29 -2.83 -0.02 0.95 16 28 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.12 2.80 6.39 -51.93 -0.33 2.47 16 32 H 0.08 1.75 7.61 -51.93 -0.40 1.35 16 33 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 34 H 0.09 1.66 6.80 -51.93 -0.35 1.31 16 35 H 0.08 1.71 8.04 -51.93 -0.42 1.29 16 36 H 0.08 1.26 7.52 -51.93 -0.39 0.87 16 37 H 0.05 0.68 7.36 -51.93 -0.38 0.30 16 38 H 0.12 1.12 8.03 -51.93 -0.42 0.70 16 39 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 40 H 0.11 1.99 6.80 -51.93 -0.35 1.64 16 41 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -29.49 346.93 -5.47 -34.96 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.93 Total: 6.41 kcal Atomic # 6 Polarization: 23.44 SS G_CDS: 0.70 Total: 24.14 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: -0.92 Total: -40.10 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.63 Total: -37.07 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.11 Total: -6.83 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.49 -5.47 -34.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348279164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.889 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds