Wall clock time and date at job start Tue Mar 31 2020 20:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 116.99679 * 2 1 4 4 O 1.20823 * 120.00065 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99770 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46653 * 179.97438 * 5 3 2 7 7 C 1.37095 * 120.00429 * 264.05247 * 6 5 3 8 8 H 1.07996 * 120.00405 * 197.63074 * 7 6 5 9 9 C 1.38951 * 119.99915 * 17.63784 * 7 6 5 10 10 N 1.31411 * 119.99746 * 19.76985 * 9 7 6 11 11 Si 1.86795 * 120.00128 * 199.78245 * 9 7 6 12 12 H 1.48495 * 109.47625 * 89.99645 * 11 9 7 13 13 H 1.48498 * 109.46991 * 209.99639 * 11 9 7 14 14 H 1.48504 * 109.47082 * 329.98972 * 11 9 7 15 15 C 1.34777 * 119.99565 * 84.06217 * 6 5 3 16 16 O 1.21290 * 120.00307 * 359.97438 * 15 6 5 17 17 C 1.50702 * 119.99796 * 179.71845 * 15 6 5 18 18 H 1.09002 * 110.63244 * 303.38305 * 17 15 6 19 19 C 1.55140 * 110.70388 * 66.67401 * 17 15 6 20 20 C 1.54913 * 101.65479 * 154.03530 * 19 17 15 21 21 N 1.47845 * 104.79362 * 322.93243 * 20 19 17 22 22 C 1.46902 * 111.00038 * 146.36192 * 21 20 19 23 23 C 1.52997 * 109.47391 * 69.15497 * 22 21 20 24 24 F 1.39908 * 109.46891 * 59.99979 * 23 22 21 25 25 F 1.39894 * 109.47187 * 179.97438 * 23 22 21 26 26 F 1.39899 * 109.46994 * 300.00671 * 23 22 21 27 27 C 1.47451 * 108.56965 * 24.09281 * 21 20 19 28 28 H 1.09004 * 109.47293 * 299.99909 * 1 2 3 29 29 H 1.08997 * 109.47471 * 60.00425 * 1 2 3 30 30 H 1.09003 * 109.46975 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46920 * 59.99859 * 5 3 2 32 32 H 1.08997 * 109.46957 * 299.99600 * 5 3 2 33 33 H 0.97006 * 120.00190 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.99402 * 272.12621 * 19 17 15 35 35 H 1.09006 * 110.99243 * 35.94877 * 19 17 15 36 36 H 1.08999 * 110.37688 * 204.10453 * 20 19 17 37 37 H 1.08997 * 110.37117 * 81.75846 * 20 19 17 38 38 H 1.09004 * 109.46936 * 189.15869 * 22 21 20 39 39 H 1.09001 * 109.46940 * 309.15221 * 22 21 20 40 40 H 1.08992 * 109.89003 * 239.60780 * 27 21 20 41 41 H 1.08999 * 110.01923 * 118.48787 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 4.2933 3.3021 -1.1822 8 1 4.8610 4.2208 -1.1751 9 6 3.8789 2.7509 -2.3885 10 7 2.8901 1.8856 -2.4101 11 14 4.7274 3.2395 -3.9792 12 1 5.8656 2.3210 -4.2356 13 1 3.7600 3.1545 -5.1026 14 1 5.2310 4.6318 -3.8641 15 6 4.0571 3.3605 1.1597 16 8 3.7810 2.8101 2.2047 17 6 4.4904 4.8039 1.1599 18 1 5.4689 4.9113 0.6918 19 6 3.4370 5.6929 0.4479 20 6 3.6816 7.0671 1.1198 21 7 3.9922 6.7480 2.5296 22 6 4.9641 7.7004 3.0831 23 6 4.3063 9.0741 3.2282 24 9 3.2073 8.9764 4.0884 25 9 5.2317 9.9809 3.7558 26 9 3.8781 9.5208 1.9735 27 6 4.5077 5.3682 2.5962 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9556 0.7810 -0.8908 32 1 3.9563 0.7807 0.8892 33 1 2.6009 1.5005 -3.2522 34 1 3.6286 5.7428 -0.6240 35 1 2.4264 5.3357 0.6462 36 1 2.7851 7.6841 1.0591 37 1 4.5248 7.5740 0.6509 38 1 5.2977 7.3522 4.0607 39 1 5.8204 7.7764 2.4130 40 1 3.8683 4.7640 3.2396 41 1 5.5272 5.3689 2.9819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348279164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:12 Heat of formation + Delta-G solvation = -269.409591 kcal Electronic energy + Delta-G solvation = -31105.930881 eV Core-core repulsion = 26185.074695 eV Total energy + Delta-G solvation = -4920.856186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.01046 -48.56290 -48.46771 -41.49159 -40.67218 -39.14746 -37.25115 -36.51987 -33.95825 -33.41339 -30.61581 -29.94161 -28.98036 -27.76577 -26.59842 -24.22353 -23.23340 -22.23202 -21.74199 -20.85177 -19.50604 -19.35948 -18.87696 -18.68262 -18.39864 -18.03714 -17.27496 -16.99800 -16.61914 -16.31349 -16.07943 -15.66375 -15.42283 -15.37807 -15.20093 -14.97819 -14.92810 -14.68004 -14.64498 -14.49692 -14.22621 -14.06899 -13.84942 -13.61281 -13.32530 -13.08278 -12.88803 -12.85629 -12.62619 -12.50008 -12.28966 -12.22769 -12.07115 -11.99694 -11.72131 -11.56560 -11.47035 -10.91463 -10.42444 -9.86465 -9.50951 -8.34875 -5.90554 1.43297 1.52035 1.61393 1.70307 1.77890 1.81711 2.24699 2.35227 2.55206 2.85661 2.93509 3.13143 3.13807 3.43432 3.70624 3.79427 4.07636 4.21565 4.25835 4.31441 4.34773 4.35706 4.39537 4.40762 4.42640 4.56652 4.66743 4.70383 4.78584 4.95765 5.04738 5.20400 5.30666 5.48328 5.64633 5.69830 5.75925 5.81812 6.34593 7.09775 7.23046 7.49928 7.90281 8.72502 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.003553 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.578675 B = 7879.791363 C = 9022.788245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.485 3.515 4 O -0.536 6.536 5 C 0.154 3.846 6 N -0.437 5.437 7 C -0.342 4.342 8 H 0.121 0.879 9 C -0.004 4.004 10 N -0.898 5.898 11 Si 0.991 3.009 12 H -0.271 1.271 13 H -0.296 1.296 14 H -0.256 1.256 15 C 0.468 3.532 16 O -0.629 6.629 17 C -0.104 4.104 18 H 0.114 0.886 19 C -0.099 4.099 20 C 0.045 3.955 21 N -0.539 5.539 22 C 0.005 3.995 23 C 0.458 3.542 24 F -0.187 7.187 25 F -0.183 7.183 26 F -0.189 7.189 27 C 0.071 3.929 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.270 0.730 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.072 0.928 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.679 7.230 4.412 10.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.328 3.672 4 O -0.424 6.424 5 C 0.028 3.972 6 N -0.154 5.154 7 C -0.469 4.469 8 H 0.138 0.862 9 C -0.205 4.205 10 N -0.537 5.537 11 Si 0.815 3.185 12 H -0.196 1.196 13 H -0.222 1.222 14 H -0.179 1.179 15 C 0.258 3.742 16 O -0.517 6.517 17 C -0.125 4.125 18 H 0.132 0.868 19 C -0.137 4.137 20 C -0.082 4.082 21 N -0.263 5.263 22 C -0.125 4.125 23 C 0.404 3.596 24 F -0.169 7.169 25 F -0.165 7.165 26 F -0.171 7.171 27 C -0.056 4.056 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.156 0.844 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.749 7.218 5.070 10.018 hybrid contribution -0.012 0.093 -1.479 1.482 sum 4.737 7.310 3.592 9.422 Atomic orbital electron populations 1.23270 0.76307 1.04794 1.01093 1.86423 1.24024 1.33973 1.85085 1.24124 0.92718 0.80740 0.69580 1.90484 1.67338 1.37641 1.46912 1.20523 0.86964 0.86102 1.03637 1.43613 1.56894 1.08174 1.06744 1.20015 1.33729 1.10996 0.82121 0.86186 1.26043 0.94965 0.97054 1.02470 1.69934 1.23954 1.31456 1.28370 0.84945 0.77543 0.79471 0.76528 1.19628 1.22242 1.17946 1.20622 0.81359 0.89159 0.83065 1.90501 1.57038 1.71161 1.32995 1.22153 1.01208 0.91217 0.97968 0.86837 1.22460 0.97346 0.93452 1.00462 1.23302 1.02137 0.96495 0.86284 1.63469 1.40706 1.02323 1.19813 1.23579 0.94538 0.87743 1.06603 1.20642 0.76911 0.88742 0.73351 1.93181 1.56343 1.96441 1.70913 1.93177 1.65989 1.70532 1.86796 1.93166 1.90638 1.91152 1.42097 1.22569 1.00736 0.86885 0.95400 0.93245 0.93676 0.84833 0.86097 0.89370 0.92043 0.89357 0.94270 0.89979 0.90430 0.84412 0.87513 0.90995 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.55 113.37 1.20 2.53 16 2 O -0.38 -16.25 10.57 -51.44 -0.54 -16.79 16 3 C 0.49 24.16 6.11 71.24 0.44 24.59 16 4 O -0.54 -30.11 15.75 21.97 0.35 -29.77 16 5 C 0.15 7.26 5.14 85.63 0.44 7.70 16 6 N -0.44 -20.83 2.18 -639.60 -1.39 -22.22 16 7 C -0.34 -15.69 8.14 84.04 0.68 -15.01 16 8 H 0.12 4.98 5.62 -2.91 -0.02 4.97 16 9 C 0.00 -0.17 4.91 84.93 0.42 0.25 16 10 N -0.90 -45.16 9.18 21.66 0.20 -44.97 16 11 Si 0.99 36.88 29.60 68.60 2.03 38.91 16 12 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 13 H -0.30 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 15 C 0.47 21.50 6.80 87.66 0.60 22.09 16 16 O -0.63 -32.13 15.10 -3.06 -0.05 -32.18 16 17 C -0.10 -3.68 2.35 -10.36 -0.02 -3.70 16 18 H 0.11 3.50 7.56 -2.39 -0.02 3.49 16 19 C -0.10 -3.51 5.72 31.98 0.18 -3.33 16 20 C 0.04 1.24 5.08 86.78 0.44 1.68 16 21 N -0.54 -14.66 5.09 -885.52 -4.50 -19.17 16 22 C 0.00 0.09 4.69 86.30 0.40 0.50 16 23 C 0.46 9.90 3.26 71.98 0.23 10.13 16 24 F -0.19 -4.84 17.24 44.97 0.78 -4.07 16 25 F -0.18 -3.70 17.32 44.97 0.78 -2.92 16 26 F -0.19 -4.46 14.70 44.97 0.66 -3.80 16 27 C 0.07 2.18 6.29 86.64 0.54 2.73 16 28 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 30 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.12 5.68 6.39 -2.39 -0.02 5.66 16 32 H 0.09 3.93 7.61 -2.39 -0.02 3.91 16 33 H 0.27 13.12 8.31 -92.70 -0.77 12.35 16 34 H 0.09 3.15 6.80 -2.39 -0.02 3.13 16 35 H 0.04 1.70 8.04 -2.38 -0.02 1.68 16 36 H 0.08 2.33 7.52 -2.39 -0.02 2.32 16 37 H 0.08 1.76 7.36 -2.39 -0.02 1.75 16 38 H 0.14 2.10 8.03 -2.39 -0.02 2.08 16 39 H 0.11 1.55 7.85 -2.39 -0.02 1.53 16 40 H 0.07 2.73 6.80 -2.39 -0.02 2.71 16 41 H 0.09 2.12 7.56 -2.39 -0.02 2.10 16 Total: -1.00 -65.67 346.93 4.94 -60.73 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 1.08 Total: 26.07 kcal Atomic # 6 Polarization: 44.61 SS G_CDS: 5.55 Total: 50.16 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -5.70 Total: -86.35 kcal Atomic # 8 Polarization: -78.49 SS G_CDS: -0.24 Total: -78.74 kcal Atomic # 9 Polarization: -13.00 SS G_CDS: 2.21 Total: -10.79 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -65.67 4.94 -60.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348279164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.679 kcal (2) G-P(sol) polarization free energy of solvation -65.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds