Wall clock time and date at job start Tue Mar 31 2020 20:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35238 * 107.86767 * 179.83904 * 11 10 9 13 13 C 1.40415 * 107.86263 * 0.42170 * 12 11 10 14 14 N 1.40114 * 125.97338 * 179.71740 * 13 12 11 15 15 C 1.34773 * 119.99907 * 359.97438 * 14 13 12 16 16 O 1.21627 * 119.99982 * 0.02562 * 15 14 13 17 17 C 1.47297 * 119.99862 * 179.97438 * 15 14 13 18 18 C 1.37933 * 126.80690 * 0.02562 * 17 15 14 19 19 N 1.34201 * 107.89095 * 180.02562 * 18 17 15 20 20 H 0.96999 * 125.16461 * 180.02562 * 19 18 17 21 21 N 1.39771 * 109.66714 * 0.02562 * 19 18 17 22 22 C 1.31380 * 109.07610 * 359.70031 * 21 19 18 23 23 C 1.48254 * 126.51729 * 180.28400 * 22 21 19 24 24 C 1.39811 * 120.91123 * 144.90554 * 23 22 21 25 25 C 1.37971 * 119.01249 * 179.75860 * 24 23 22 26 26 N 1.31922 * 120.88705 * 0.53801 * 25 24 23 27 27 C 1.31926 * 122.02076 * 359.74011 * 26 25 24 28 28 C 1.37968 * 120.88064 * 359.97339 * 27 26 25 29 29 N 1.31227 * 108.05286 * 359.73806 * 13 12 11 30 30 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 32 32 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 33 33 H 1.08003 * 126.06488 * 359.96732 * 11 10 9 34 34 H 1.08001 * 126.07000 * 180.13470 * 12 11 10 35 35 H 0.97009 * 119.99623 * 180.02562 * 14 13 12 36 36 H 1.08006 * 126.05231 * 0.02562 * 18 17 15 37 37 H 1.07995 * 120.49086 * 0.03252 * 24 23 22 38 38 H 1.08005 * 119.55190 * 180.27739 * 25 24 23 39 39 H 1.08002 * 119.56089 * 180.02562 * 27 26 25 40 40 H 1.08002 * 120.49289 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0539 -4.4044 -0.5778 13 6 4.2969 -4.6707 0.5745 14 7 4.2283 -5.8968 1.2490 15 6 4.9308 -6.9546 0.7975 16 8 5.6248 -6.8447 -0.1953 17 6 4.8591 -8.2434 1.5070 18 6 4.1227 -8.5237 2.6391 19 7 4.3355 -9.8088 2.9617 20 1 3.9384 -10.2681 3.7182 21 7 5.2164 -10.3850 2.0421 22 6 5.5526 -9.4840 1.1470 23 6 6.4628 -9.6829 -0.0062 24 6 6.2339 -9.0325 -1.2225 25 6 7.1089 -9.2421 -2.2684 26 7 8.1427 -10.0507 -2.1349 27 6 8.3914 -10.6877 -1.0067 28 6 7.5704 -10.5308 0.0909 29 7 3.6647 -3.5705 0.9089 30 1 -0.4850 0.8400 0.0004 31 1 3.8711 -0.6780 -0.9023 32 1 3.8785 -0.6824 0.8776 33 1 5.2836 -2.6015 -1.7661 34 1 5.6854 -5.1078 -1.1003 35 1 3.6744 -5.9845 2.0406 36 1 3.4872 -7.8314 3.1715 37 1 5.3872 -8.3725 -1.3400 38 1 6.9429 -8.7405 -3.2104 39 1 9.2496 -11.3401 -0.9412 40 1 7.7801 -11.0550 1.0116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349854783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:51 Heat of formation + Delta-G solvation = 172.887092 kcal Electronic energy + Delta-G solvation = -27248.851297 eV Core-core repulsion = 23260.925696 eV Total energy + Delta-G solvation = -3987.925600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67683 -40.65219 -39.91926 -38.96968 -34.95492 -33.84287 -33.34021 -31.65300 -31.32434 -30.84649 -30.44096 -29.40422 -27.17815 -24.61655 -24.09557 -23.51105 -22.49709 -21.40354 -20.72859 -20.18955 -19.47301 -18.67256 -17.07786 -16.87041 -16.72389 -16.40679 -16.23213 -15.92680 -15.41202 -15.36150 -14.79223 -14.47003 -14.27688 -14.16607 -13.84424 -13.59770 -13.53308 -13.12262 -13.06074 -12.59478 -12.38594 -12.14914 -11.84691 -11.45087 -11.19432 -10.90820 -10.78029 -10.54841 -10.15722 -10.02843 -9.82545 -9.59008 -9.53964 -9.46723 -9.18067 -8.99741 -8.79426 -8.22622 -7.55966 -6.26348 -4.28782 0.65265 1.05430 1.11997 1.96189 2.17825 2.60589 2.69949 3.07577 3.14218 3.19288 3.22511 3.69214 3.73036 3.76799 3.89477 4.12896 4.20354 4.39435 4.59775 4.77583 4.86729 4.93442 5.01780 5.04341 5.12389 5.41841 5.52955 5.57272 5.67517 5.77571 5.99361 6.13685 6.18343 6.36534 6.41493 6.51868 6.59562 6.60198 6.63617 6.98245 7.22229 7.30505 7.53942 7.78175 7.88666 8.19844 8.30399 8.52153 8.83035 9.28667 10.86281 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.002417 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.266210 B =11581.646386 C =12744.960226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.319 5.319 11 C 0.052 3.948 12 C -0.281 4.281 13 C 0.262 3.738 14 N -0.626 5.626 15 C 0.599 3.401 16 O -0.511 6.511 17 C -0.272 4.272 18 C 0.115 3.885 19 N -0.459 5.459 20 H 0.447 0.553 21 N -0.275 5.275 22 C 0.172 3.828 23 C 0.014 3.986 24 C -0.103 4.103 25 C 0.092 3.908 26 N -0.479 5.479 27 C 0.085 3.915 28 C -0.143 4.143 29 N -0.298 5.298 30 H 0.268 0.732 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.407 0.593 36 H 0.194 0.806 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.780 -20.104 4.402 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.100 5.100 11 C -0.098 4.098 12 C -0.312 4.312 13 C 0.008 3.992 14 N -0.273 5.273 15 C 0.387 3.613 16 O -0.387 6.387 17 C -0.288 4.288 18 C -0.036 4.036 19 N -0.165 5.165 20 H 0.292 0.708 21 N -0.096 5.096 22 C 0.003 3.997 23 C 0.003 3.997 24 C -0.124 4.124 25 C -0.064 4.064 26 N -0.188 5.188 27 C -0.072 4.072 28 C -0.164 4.164 29 N -0.129 5.129 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.186 0.814 34 H 0.181 0.819 35 H 0.243 0.757 36 H 0.211 0.789 37 H 0.175 0.825 38 H 0.177 0.823 39 H 0.173 0.827 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.954 -20.557 4.217 24.151 hybrid contribution -0.553 1.401 1.032 1.826 sum 11.402 -19.156 5.249 22.902 Atomic orbital electron populations 1.69870 1.06157 1.27318 1.49146 1.24833 0.94873 0.98810 0.94252 0.86893 0.80261 0.83819 0.78996 1.19727 1.18927 1.20586 1.21102 0.87775 0.95686 1.52692 0.89644 1.20057 0.97450 0.72992 0.98222 1.48610 1.32830 1.10146 1.18457 1.22571 0.95953 0.94734 0.96507 1.21555 1.11418 0.96794 1.01451 1.19038 0.99006 0.86415 0.94694 1.42232 1.47478 1.07368 1.30198 1.16972 0.79130 0.81612 0.83628 1.90695 1.39846 1.82907 1.25222 1.21108 1.10274 0.95390 1.01988 1.23165 0.97368 0.87429 0.95654 1.45968 1.36901 1.08587 1.25026 0.70792 1.77372 1.09679 1.20348 1.02177 1.21635 0.95128 0.89507 0.93435 1.17945 0.93473 0.97352 0.90882 1.22628 1.01600 0.96466 0.91664 1.22723 0.89998 0.94744 0.98982 1.67593 1.18767 1.06684 1.25784 1.22586 0.98726 0.97713 0.88177 1.22157 0.95005 0.98490 1.00735 1.77383 1.23749 0.95538 1.16208 0.92168 0.92872 0.94481 0.81393 0.81898 0.75749 0.78898 0.82537 0.82316 0.82716 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.96 55.43 0.77 -25.38 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 19.80 27.47 -169.99 -4.67 15.13 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.73 9.79 -34.44 -0.34 -15.07 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 C 0.23 5.34 5.33 -5.20 -0.03 5.31 16 10 N -0.32 -6.95 3.67 -62.56 -0.23 -7.18 16 11 C 0.05 0.95 11.43 -17.24 -0.20 0.75 16 12 C -0.28 -5.11 9.60 -39.83 -0.38 -5.49 16 13 C 0.26 4.87 8.11 -154.42 -1.25 3.61 16 14 N -0.63 -8.74 5.44 -12.14 -0.07 -8.81 16 15 C 0.60 8.01 7.67 -12.58 -0.10 7.92 16 16 O -0.51 -7.87 9.62 5.25 0.05 -7.82 16 17 C -0.27 -2.90 6.28 -102.95 -0.65 -3.55 16 18 C 0.11 0.77 11.50 -16.63 -0.19 0.57 16 19 N -0.46 -2.93 7.20 30.82 0.22 -2.71 16 20 H 0.45 1.16 8.96 -182.85 -1.64 -0.48 16 21 N -0.27 -2.76 12.64 34.57 0.44 -2.32 16 22 C 0.17 1.95 6.98 -80.57 -0.56 1.39 16 23 C 0.01 0.16 5.75 -104.60 -0.60 -0.44 16 24 C -0.10 -1.24 7.89 -39.09 -0.31 -1.55 16 25 C 0.09 1.06 11.17 -17.61 -0.20 0.86 16 26 N -0.48 -5.74 10.35 -13.35 -0.14 -5.88 16 27 C 0.08 0.86 11.17 -17.61 -0.20 0.66 16 28 C -0.14 -1.46 9.88 -39.09 -0.39 -1.84 16 29 N -0.30 -6.48 12.42 31.43 0.39 -6.09 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.05 1.13 7.12 -51.93 -0.37 0.76 16 32 H 0.04 0.84 7.57 -51.93 -0.39 0.45 16 33 H 0.17 2.45 8.06 -52.48 -0.42 2.03 16 34 H 0.16 2.82 5.91 -52.49 -0.31 2.51 16 35 H 0.41 4.39 7.78 -40.82 -0.32 4.07 16 36 H 0.19 0.52 7.48 -52.48 -0.39 0.12 16 37 H 0.16 2.00 5.78 -52.49 -0.30 1.70 16 38 H 0.16 1.49 8.06 -52.48 -0.42 1.06 16 39 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -36.18 350.76 -8.43 -44.61 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.01 Total: 6.03 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -5.48 Total: -4.85 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 1.39 Total: -58.37 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.05 Total: -7.82 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.67 Total: 15.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.18 -8.43 -44.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349854783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.494 kcal (2) G-P(sol) polarization free energy of solvation -36.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds