Wall clock time and date at job start Tue Mar 31 2020 20:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00265 * 2 1 4 4 H 1.48498 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47138 * 300.00809 * 3 2 1 6 6 H 1.48503 * 109.46496 * 60.00533 * 3 2 1 7 7 C 1.37872 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00246 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47386 * 180.02562 * 9 7 2 11 11 C 1.34969 * 125.97494 * 125.01950 * 10 9 7 12 12 C 1.35242 * 107.86362 * 179.72538 * 11 10 9 13 13 C 1.40424 * 107.86712 * 0.37262 * 12 11 10 14 14 N 1.40097 * 125.97348 * 179.88990 * 13 12 11 15 15 C 1.34778 * 120.00338 * 359.70694 * 14 13 12 16 16 O 1.21624 * 119.99857 * 0.02562 * 15 14 13 17 17 C 1.47306 * 119.99925 * 180.02562 * 15 14 13 18 18 C 1.37918 * 126.80538 * 0.15705 * 17 15 14 19 19 N 1.34213 * 107.88953 * 180.29542 * 18 17 15 20 20 H 0.96996 * 125.16497 * 179.73876 * 19 18 17 21 21 N 1.39773 * 109.66758 * 359.72053 * 19 18 17 22 22 C 1.31388 * 109.07228 * 0.02562 * 21 19 18 23 23 C 1.48240 * 126.51022 * 179.97438 * 22 21 19 24 24 C 1.39381 * 119.73385 * 335.02370 * 23 22 21 25 25 C 1.38380 * 119.06358 * 180.28026 * 24 23 22 26 26 C 1.38795 * 118.51585 * 359.45504 * 25 24 23 27 27 C 1.38257 * 119.37488 * 0.52620 * 26 25 24 28 28 N 1.31750 * 120.89525 * 359.74370 * 27 26 25 29 29 N 1.31233 * 108.04573 * 359.62328 * 13 12 11 30 30 H 0.97006 * 119.99564 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46976 * 59.99975 * 9 7 2 32 32 H 1.08997 * 109.46734 * 300.00663 * 9 7 2 33 33 H 1.07996 * 126.06881 * 359.97438 * 11 10 9 34 34 H 1.07999 * 126.06757 * 180.24394 * 12 11 10 35 35 H 0.97005 * 120.00066 * 179.71349 * 14 13 12 36 36 H 1.08003 * 126.05616 * 0.02562 * 18 17 15 37 37 H 1.08002 * 120.46429 * 359.97438 * 24 23 22 38 38 H 1.08003 * 120.74402 * 179.70631 * 25 24 23 39 39 H 1.08008 * 120.31355 * 180.24609 * 26 25 24 40 40 H 1.08001 * 119.54843 * 179.72219 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 2.2417 -4.6226 0.8940 12 6 3.2566 -5.4461 0.5461 13 6 3.8681 -4.9154 -0.6011 14 7 4.9626 -5.4668 -1.2800 15 6 5.5266 -6.6073 -0.8354 16 8 5.0850 -7.1581 0.1550 17 6 6.6777 -7.1866 -1.5489 18 6 7.2900 -6.6817 -2.6769 19 7 8.2912 -7.5115 -3.0090 20 1 8.8846 -7.3955 -3.7674 21 7 8.3491 -8.5680 -2.0956 22 6 7.4012 -8.4129 -1.1992 23 6 7.1140 -9.3106 -0.0550 24 6 7.4869 -10.6521 -0.1183 25 6 7.2068 -11.4791 0.9553 26 6 6.5725 -10.9346 2.0633 27 6 6.2311 -9.5949 2.0590 28 7 6.5043 -8.8304 1.0213 29 7 3.2315 -3.8158 -0.9294 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6246 -2.5570 0.8896 33 1 1.5775 -4.7524 1.7356 34 1 3.5466 -6.3503 1.0607 35 1 5.3147 -5.0276 -2.0700 36 1 7.0102 -5.7807 -3.2026 37 1 7.9830 -11.0418 -0.9949 38 1 7.4794 -12.5239 0.9333 39 1 6.3436 -11.5527 2.9189 40 1 5.7334 -9.1693 2.9179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354406665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:34 Heat of formation + Delta-G solvation = 176.944908 kcal Electronic energy + Delta-G solvation = -27240.656737 eV Core-core repulsion = 23252.907097 eV Total energy + Delta-G solvation = -3987.749640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48931 -40.40636 -39.91305 -38.59804 -34.54725 -33.34279 -33.15489 -32.51737 -31.31740 -30.30553 -30.12491 -29.17025 -26.61470 -24.51869 -23.97084 -23.53756 -22.61621 -21.23020 -20.62749 -20.08493 -19.19866 -18.45639 -16.97267 -16.55109 -16.50840 -16.19798 -16.09510 -15.76825 -15.39608 -15.12349 -14.54947 -14.36633 -14.15820 -13.92376 -13.77237 -13.55853 -13.43162 -12.88891 -12.69354 -12.27183 -12.13343 -11.97194 -11.69131 -11.39941 -11.00410 -10.84344 -10.55902 -10.28668 -10.22325 -9.97018 -9.85597 -9.53181 -9.41484 -9.20497 -9.10440 -8.75934 -8.60658 -8.00013 -7.32810 -6.21266 -4.25902 0.57745 1.20028 1.25784 2.03731 2.26934 2.84270 2.95842 3.23982 3.31274 3.35298 3.38788 3.73491 3.81421 4.02010 4.05461 4.23353 4.35435 4.59008 4.68483 4.75891 4.91943 4.95540 5.10553 5.13914 5.17938 5.33870 5.59323 5.67676 5.80956 5.91946 5.95338 6.06084 6.42328 6.53452 6.62317 6.70559 6.78563 6.94000 7.08521 7.11323 7.56636 7.71207 7.78398 7.96138 7.97717 8.13378 8.57413 8.73585 8.86050 9.39576 10.87400 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.002430 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.143495 B =11519.757295 C =12636.060450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.069 0.931 9 C 0.259 3.741 10 N -0.322 5.322 11 C 0.049 3.951 12 C -0.284 4.284 13 C 0.265 3.735 14 N -0.634 5.634 15 C 0.587 3.413 16 O -0.474 6.474 17 C -0.249 4.249 18 C 0.102 3.898 19 N -0.460 5.460 20 H 0.446 0.554 21 N -0.275 5.275 22 C 0.176 3.824 23 C 0.185 3.815 24 C -0.142 4.142 25 C -0.086 4.086 26 C -0.165 4.165 27 C 0.104 3.896 28 N -0.407 5.407 29 N -0.310 5.310 30 H 0.266 0.734 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.166 0.834 34 H 0.162 0.838 35 H 0.403 0.597 36 H 0.193 0.807 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.938 -21.176 -2.755 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.104 5.104 11 C -0.101 4.101 12 C -0.316 4.316 13 C 0.012 3.988 14 N -0.283 5.283 15 C 0.373 3.627 16 O -0.345 6.345 17 C -0.265 4.265 18 C -0.047 4.047 19 N -0.166 5.166 20 H 0.291 0.709 21 N -0.098 5.098 22 C 0.007 3.993 23 C 0.046 3.954 24 C -0.163 4.163 25 C -0.112 4.112 26 C -0.186 4.186 27 C -0.055 4.055 28 N -0.116 5.116 29 N -0.141 5.141 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.237 0.763 36 H 0.210 0.790 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 16.026 -20.228 -3.222 26.008 hybrid contribution 0.431 0.369 -0.176 0.594 sum 16.456 -19.859 -3.399 26.014 Atomic orbital electron populations 1.69932 1.06031 1.27436 1.50046 1.24948 0.94976 0.99533 0.94716 0.86287 0.80081 0.82543 0.77674 1.19567 1.20754 1.20790 1.21310 0.94040 0.89395 1.51633 0.91252 1.19711 0.85657 0.81370 0.99165 1.49023 1.23356 1.19745 1.18233 1.22546 1.00476 0.90295 0.96791 1.21553 1.01947 1.06260 1.01804 1.19039 0.91161 0.94035 0.94575 1.42299 1.30361 1.25213 1.30401 1.16968 0.81996 0.79645 0.84127 1.90815 1.60810 1.59267 1.23569 1.21192 1.04131 1.00090 1.01065 1.23153 0.89405 0.96150 0.96041 1.45897 1.27276 1.18406 1.25066 0.70921 1.77268 1.21495 1.08424 1.02607 1.21278 0.92197 0.92814 0.93006 1.18349 0.96491 0.89399 0.91144 1.22051 1.00529 0.93684 1.00050 1.21467 0.96766 1.00091 0.92870 1.22326 0.99704 0.97208 0.99324 1.22851 0.96249 0.90254 0.96125 1.67906 1.06747 1.38344 0.98594 1.77310 1.03857 1.16545 1.16403 0.92439 0.93826 0.92629 0.81688 0.82107 0.76276 0.79042 0.84615 0.84705 0.84714 0.82281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.70 9.24 -34.44 -0.32 -15.02 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.26 6.63 6.26 -5.20 -0.03 6.60 16 10 N -0.32 -7.57 3.67 -62.57 -0.23 -7.80 16 11 C 0.05 0.99 11.43 -17.24 -0.20 0.80 16 12 C -0.28 -5.74 9.61 -39.83 -0.38 -6.12 16 13 C 0.27 5.40 8.11 -154.43 -1.25 4.15 16 14 N -0.63 -10.08 5.44 -12.14 -0.07 -10.15 16 15 C 0.59 9.26 7.78 -12.57 -0.10 9.16 16 16 O -0.47 -8.68 10.81 5.26 0.06 -8.62 16 17 C -0.25 -3.14 6.31 -102.95 -0.65 -3.79 16 18 C 0.10 0.82 11.50 -16.63 -0.19 0.63 16 19 N -0.46 -3.37 7.20 30.82 0.22 -3.15 16 20 H 0.45 1.48 8.96 -182.85 -1.64 -0.16 16 21 N -0.28 -3.00 12.53 34.57 0.43 -2.57 16 22 C 0.18 2.27 7.11 -80.57 -0.57 1.70 16 23 C 0.18 2.43 6.62 -82.96 -0.55 1.88 16 24 C -0.14 -1.45 9.75 -39.10 -0.38 -1.83 16 25 C -0.09 -0.71 10.16 -39.32 -0.40 -1.11 16 26 C -0.17 -1.39 10.11 -39.37 -0.40 -1.79 16 27 C 0.10 1.17 11.17 -17.58 -0.20 0.97 16 28 N -0.41 -5.84 7.08 -9.79 -0.07 -5.91 16 29 N -0.31 -7.19 12.42 31.43 0.39 -6.79 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 33 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 34 H 0.16 3.17 5.91 -52.49 -0.31 2.86 16 35 H 0.40 5.02 7.78 -40.82 -0.32 4.70 16 36 H 0.19 0.77 7.48 -52.48 -0.39 0.37 16 37 H 0.14 1.17 8.04 -52.49 -0.42 0.75 16 38 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -36.76 356.64 -9.05 -45.80 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.16 Total: 4.32 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -5.72 Total: -2.19 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 1.42 Total: -61.10 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.06 Total: -8.62 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.76 -9.05 -45.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354406665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.750 kcal (2) G-P(sol) polarization free energy of solvation -36.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds