Wall clock time and date at job start Tue Mar 31 2020 20:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00265 * 2 1 4 4 H 1.48498 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47138 * 300.00809 * 3 2 1 6 6 H 1.48503 * 109.46496 * 60.00533 * 3 2 1 7 7 C 1.37872 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00246 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47386 * 180.02562 * 9 7 2 11 11 C 1.34969 * 125.97494 * 125.01950 * 10 9 7 12 12 C 1.35242 * 107.86362 * 179.72538 * 11 10 9 13 13 C 1.40424 * 107.86712 * 0.37262 * 12 11 10 14 14 N 1.40097 * 125.97348 * 179.88990 * 13 12 11 15 15 C 1.34778 * 120.00338 * 359.70694 * 14 13 12 16 16 O 1.21624 * 119.99857 * 0.02562 * 15 14 13 17 17 C 1.47306 * 119.99925 * 180.02562 * 15 14 13 18 18 C 1.37918 * 126.80538 * 0.15705 * 17 15 14 19 19 N 1.34213 * 107.88953 * 180.29542 * 18 17 15 20 20 H 0.96996 * 125.16497 * 179.73876 * 19 18 17 21 21 N 1.39773 * 109.66758 * 359.72053 * 19 18 17 22 22 C 1.31388 * 109.07228 * 0.02562 * 21 19 18 23 23 C 1.48240 * 126.51022 * 179.97438 * 22 21 19 24 24 C 1.39381 * 119.73385 * 335.02370 * 23 22 21 25 25 C 1.38380 * 119.06358 * 180.28026 * 24 23 22 26 26 C 1.38795 * 118.51585 * 359.45504 * 25 24 23 27 27 C 1.38257 * 119.37488 * 0.52620 * 26 25 24 28 28 N 1.31750 * 120.89525 * 359.74370 * 27 26 25 29 29 N 1.31233 * 108.04573 * 359.62328 * 13 12 11 30 30 H 0.97006 * 119.99564 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46976 * 59.99975 * 9 7 2 32 32 H 1.08997 * 109.46734 * 300.00663 * 9 7 2 33 33 H 1.07996 * 126.06881 * 359.97438 * 11 10 9 34 34 H 1.07999 * 126.06757 * 180.24394 * 12 11 10 35 35 H 0.97005 * 120.00066 * 179.71349 * 14 13 12 36 36 H 1.08003 * 126.05616 * 0.02562 * 18 17 15 37 37 H 1.08002 * 120.46429 * 359.97438 * 24 23 22 38 38 H 1.08003 * 120.74402 * 179.70631 * 25 24 23 39 39 H 1.08008 * 120.31355 * 180.24609 * 26 25 24 40 40 H 1.08001 * 119.54843 * 179.72219 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 2.2417 -4.6226 0.8940 12 6 3.2566 -5.4461 0.5461 13 6 3.8681 -4.9154 -0.6011 14 7 4.9626 -5.4668 -1.2800 15 6 5.5266 -6.6073 -0.8354 16 8 5.0850 -7.1581 0.1550 17 6 6.6777 -7.1866 -1.5489 18 6 7.2900 -6.6817 -2.6769 19 7 8.2912 -7.5115 -3.0090 20 1 8.8846 -7.3955 -3.7674 21 7 8.3491 -8.5680 -2.0956 22 6 7.4012 -8.4129 -1.1992 23 6 7.1140 -9.3106 -0.0550 24 6 7.4869 -10.6521 -0.1183 25 6 7.2068 -11.4791 0.9553 26 6 6.5725 -10.9346 2.0633 27 6 6.2311 -9.5949 2.0590 28 7 6.5043 -8.8304 1.0213 29 7 3.2315 -3.8158 -0.9294 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6246 -2.5570 0.8896 33 1 1.5775 -4.7524 1.7356 34 1 3.5466 -6.3503 1.0607 35 1 5.3147 -5.0276 -2.0700 36 1 7.0102 -5.7807 -3.2026 37 1 7.9830 -11.0418 -0.9949 38 1 7.4794 -12.5239 0.9333 39 1 6.3436 -11.5527 2.9189 40 1 5.7334 -9.1693 2.9179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354406665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:33 Heat of formation + Delta-G solvation = 151.587451 kcal Electronic energy + Delta-G solvation = -27241.756319 eV Core-core repulsion = 23252.907097 eV Total energy + Delta-G solvation = -3988.849222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.36159 -41.93321 -40.67282 -39.89523 -36.06520 -35.19733 -33.95515 -33.28097 -32.92290 -31.33696 -31.02389 -30.79257 -28.49430 -25.52956 -25.11158 -24.48451 -24.05340 -22.43817 -21.88497 -21.22115 -20.49168 -19.41141 -18.65023 -17.99213 -17.67782 -17.35128 -16.94802 -16.83200 -16.47821 -16.43498 -16.07195 -15.79518 -15.14657 -15.12114 -14.88302 -14.61270 -14.41596 -14.18042 -14.14490 -13.77487 -13.61593 -13.53259 -12.89900 -12.70860 -12.64738 -12.28803 -12.20186 -11.96382 -11.51212 -11.30476 -11.28048 -10.81612 -10.70214 -10.61694 -10.05184 -10.00841 -9.65564 -9.55607 -8.98669 -8.30591 -6.44744 -0.20404 0.45400 0.47408 1.10532 1.28575 1.38592 1.40097 1.44972 1.53863 1.69394 1.96621 2.34137 2.52088 2.66475 3.00606 3.01087 3.05810 3.51450 3.81495 3.94932 4.09014 4.13754 4.20774 4.25609 4.30092 4.36629 4.44078 4.65206 4.87174 4.88995 4.97526 5.01447 5.03151 5.09838 5.23761 5.30435 5.32716 5.59592 5.82926 5.83646 6.05039 6.14946 6.31326 6.34818 6.48597 6.69051 7.15664 7.19599 7.25200 7.37588 8.76880 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.002430 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.143495 B =11519.757295 C =12636.060450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.347 5.347 11 C 0.053 3.947 12 C -0.291 4.291 13 C 0.274 3.726 14 N -0.626 5.626 15 C 0.586 3.414 16 O -0.505 6.505 17 C -0.293 4.293 18 C 0.140 3.860 19 N -0.438 5.438 20 H 0.466 0.534 21 N -0.287 5.287 22 C 0.160 3.840 23 C 0.151 3.849 24 C -0.144 4.144 25 C -0.082 4.082 26 C -0.154 4.154 27 C 0.079 3.921 28 N -0.450 5.450 29 N -0.348 5.348 30 H 0.272 0.728 31 H 0.021 0.979 32 H 0.056 0.944 33 H 0.198 0.802 34 H 0.166 0.834 35 H 0.419 0.581 36 H 0.237 0.763 37 H 0.148 0.852 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.696 -22.005 -3.396 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.129 5.129 11 C -0.095 4.095 12 C -0.322 4.322 13 C 0.020 3.980 14 N -0.277 5.277 15 C 0.374 3.626 16 O -0.377 6.377 17 C -0.309 4.309 18 C -0.012 4.012 19 N -0.147 5.147 20 H 0.315 0.685 21 N -0.110 5.110 22 C -0.008 4.008 23 C 0.013 3.987 24 C -0.166 4.166 25 C -0.108 4.108 26 C -0.174 4.174 27 C -0.080 4.080 28 N -0.159 5.159 29 N -0.179 5.179 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.215 0.785 34 H 0.183 0.817 35 H 0.256 0.744 36 H 0.253 0.747 37 H 0.166 0.834 38 H 0.190 0.810 39 H 0.186 0.814 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 17.834 -21.089 -3.904 27.893 hybrid contribution -0.018 0.468 -0.002 0.468 sum 17.816 -20.621 -3.905 27.529 Atomic orbital electron populations 1.70008 1.07219 1.28648 1.50175 1.25750 0.95849 1.02744 0.93969 0.85290 0.78421 0.78364 0.78273 1.19871 1.19791 1.19605 1.21429 0.93367 0.90946 1.52491 0.92965 1.19308 0.85709 0.81589 0.97972 1.48796 1.24049 1.20325 1.19705 1.23118 1.00626 0.88995 0.96768 1.21718 1.02065 1.06402 1.02036 1.19372 0.91365 0.92946 0.94365 1.42375 1.29188 1.25382 1.30716 1.17476 0.82314 0.78939 0.83849 1.90787 1.61874 1.59974 1.25042 1.20993 1.04812 1.01542 1.03514 1.23688 0.87457 0.96200 0.93867 1.45965 1.26906 1.17114 1.24690 0.68488 1.77217 1.21105 1.09687 1.02961 1.21487 0.92674 0.93171 0.93516 1.18657 0.97811 0.90827 0.91364 1.22265 1.00219 0.92912 1.01157 1.21928 0.95491 1.01520 0.91819 1.22653 0.98087 0.96222 1.00400 1.23146 0.97120 0.91733 0.95956 1.67792 1.08178 1.40174 0.99803 1.77231 1.04898 1.18251 1.17507 0.91885 0.96117 0.92571 0.78524 0.81673 0.74402 0.74695 0.83418 0.81050 0.81355 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.62 13.29 21.45 0.28 -52.33 16 2 C 0.02 0.95 5.46 84.65 0.46 1.41 16 3 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -31.04 9.24 25.60 0.24 -30.81 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 14.42 6.26 85.64 0.54 14.95 16 10 N -0.35 -16.70 3.67 -351.86 -1.29 -17.99 16 11 C 0.05 2.19 11.43 83.52 0.96 3.14 16 12 C -0.29 -11.91 9.61 22.11 0.21 -11.70 16 13 C 0.27 11.29 8.11 133.35 1.08 12.38 16 14 N -0.63 -19.75 5.44 -310.56 -1.69 -21.44 16 15 C 0.59 18.63 7.78 86.63 0.67 19.31 16 16 O -0.50 -19.07 10.81 -4.11 -0.04 -19.11 16 17 C -0.29 -7.20 6.31 -18.78 -0.12 -7.32 16 18 C 0.14 1.88 11.50 84.25 0.97 2.85 16 19 N -0.44 -5.26 7.20 -56.42 -0.41 -5.67 16 20 H 0.47 1.52 8.96 -213.54 -1.91 -0.39 16 21 N -0.29 -5.88 12.53 -44.54 -0.56 -6.44 16 22 C 0.16 4.11 7.11 44.06 0.31 4.43 16 23 C 0.15 4.05 6.62 41.95 0.28 4.33 16 24 C -0.14 -2.83 9.75 22.58 0.22 -2.61 16 25 C -0.08 -1.18 10.16 22.44 0.23 -0.96 16 26 C -0.15 -2.36 10.11 22.41 0.23 -2.13 16 27 C 0.08 1.81 11.17 84.71 0.95 2.75 16 28 N -0.45 -13.42 7.08 -184.89 -1.31 -14.73 16 29 N -0.35 -16.44 12.42 -54.47 -0.68 -17.11 16 30 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 31 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 2.91 8.07 -2.39 -0.02 2.89 16 33 H 0.20 6.46 8.06 -2.91 -0.02 6.44 16 34 H 0.17 6.65 5.91 -2.91 -0.02 6.63 16 35 H 0.42 9.97 7.78 -92.70 -0.72 9.25 16 36 H 0.24 0.89 7.48 -2.91 -0.02 0.87 16 37 H 0.15 2.39 8.04 -2.91 -0.02 2.37 16 38 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 39 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 40 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -83.11 356.64 2.06 -81.05 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -1.50 Total: 17.86 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 7.22 Total: 10.02 kcal Atomic # 7 Polarization: -130.07 SS G_CDS: -5.64 Total: -135.71 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.04 Total: -19.11 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -83.11 2.06 -81.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354406665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.637 kcal (2) G-P(sol) polarization free energy of solvation -83.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds