Wall clock time and date at job start Tue Mar 31 2020 20:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47261 * 270.00445 * 3 2 1 5 5 H 1.48502 * 109.47019 * 30.00217 * 3 2 1 6 6 H 1.48497 * 109.46973 * 150.00276 * 3 2 1 7 7 C 1.38804 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99944 * 359.97438 * 7 2 1 9 9 S 1.76195 * 119.99902 * 179.97438 * 7 2 1 10 10 C 1.81001 * 100.00170 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47556 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47084 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46827 * 174.88753 * 12 11 10 14 14 C 1.47191 * 110.99846 * 52.13311 * 13 12 11 15 15 C 1.52964 * 108.74150 * 167.64819 * 14 13 12 16 16 N 1.46009 * 110.04903 * 50.27729 * 15 14 13 17 17 C 1.33723 * 122.92402 * 341.83943 * 16 15 14 18 18 O 1.21275 * 118.62311 * 181.68903 * 17 16 15 19 19 C 1.46901 * 111.00179 * 289.24250 * 13 12 11 20 20 H 1.08996 * 109.38738 * 53.50408 * 19 13 12 21 21 C 1.50703 * 109.29780 * 293.76706 * 19 13 12 22 22 C 1.38217 * 120.01328 * 339.53748 * 21 19 13 23 23 C 1.38232 * 120.02303 * 179.97438 * 22 21 19 24 24 C 1.38262 * 120.05045 * 0.02562 * 23 22 21 25 25 C 1.38177 * 120.02771 * 0.02562 * 24 23 22 26 26 C 1.38441 * 120.01134 * 159.25747 * 21 19 13 27 27 F 1.35099 * 120.02198 * 359.97438 * 26 21 19 28 28 H 0.97003 * 120.00267 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46969 * 59.99700 * 10 9 7 30 30 H 1.09002 * 109.47116 * 300.00051 * 10 9 7 31 31 H 1.09000 * 109.46735 * 60.00002 * 11 10 9 32 32 H 1.09002 * 109.46936 * 300.00144 * 11 10 9 33 33 H 1.08994 * 109.46953 * 54.89269 * 12 11 10 34 34 H 1.08997 * 109.46925 * 294.88571 * 12 11 10 35 35 H 1.09001 * 109.59576 * 287.40881 * 14 13 12 36 36 H 1.08997 * 109.59740 * 47.70605 * 14 13 12 37 37 H 1.09003 * 109.38012 * 290.09885 * 15 14 13 38 38 H 1.09004 * 109.37380 * 170.44933 * 15 14 13 39 39 H 0.96994 * 118.54349 * 162.12155 * 16 15 14 40 40 H 1.07996 * 119.99007 * 359.95295 * 22 21 19 41 41 H 1.08000 * 119.97325 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.98866 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00952 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7722 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5957 -3.2363 -0.0008 12 6 5.8614 -4.7431 0.0001 13 7 7.3050 -4.9859 -0.1233 14 6 8.0562 -4.2238 0.8874 15 6 9.4960 -4.7392 0.9216 16 7 10.0453 -4.7799 -0.4306 17 6 9.2800 -4.7563 -1.5270 18 8 9.8173 -4.8250 -2.6121 19 6 7.7825 -4.6479 -1.4708 20 1 7.4840 -3.6286 -1.7154 21 6 7.1742 -5.6001 -2.4680 22 6 6.6750 -6.8178 -2.0457 23 6 6.1165 -7.6911 -2.9601 24 6 6.0572 -7.3480 -4.2982 25 6 6.5566 -6.1316 -4.7229 26 6 7.1101 -5.2531 -3.8067 27 9 7.5922 -4.0605 -4.2197 28 1 -0.4851 0.8400 0.0004 29 1 3.6433 -3.4318 -0.8906 30 1 3.6440 -3.4314 0.8893 31 1 6.0386 -2.7892 0.8891 32 1 6.0387 -2.7894 -0.8909 33 1 5.3424 -5.2040 -0.8403 34 1 5.4986 -5.1754 0.9325 35 1 8.0530 -3.1660 0.6245 36 1 7.5939 -4.3587 1.8652 37 1 9.5112 -5.7420 1.3484 38 1 10.1028 -4.0763 1.5385 39 1 11.0079 -4.8303 -0.5385 40 1 6.7215 -7.0872 -1.0009 41 1 5.7270 -8.6425 -2.6293 42 1 5.6210 -8.0312 -5.0119 43 1 6.5105 -5.8641 -5.7682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374584333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:47 Heat of formation + Delta-G solvation = -48.362450 kcal Electronic energy + Delta-G solvation = -27288.772397 eV Core-core repulsion = 23374.483935 eV Total energy + Delta-G solvation = -3914.288462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.81813 -41.04863 -38.84804 -37.90246 -35.46291 -33.10671 -32.46940 -31.57599 -30.62414 -29.19549 -27.53884 -25.75237 -24.64470 -23.66013 -22.67563 -21.98977 -21.33208 -19.10314 -17.77573 -17.55630 -17.47964 -17.22798 -16.54964 -16.16706 -15.52385 -15.43322 -15.08995 -14.96910 -14.82238 -14.76546 -14.37617 -14.11992 -13.83379 -13.69408 -13.19206 -12.93950 -12.87451 -12.66844 -12.34361 -12.27047 -12.04768 -11.91201 -11.70441 -11.51836 -11.18239 -11.09088 -11.02543 -10.56468 -10.42900 -10.15959 -9.88298 -9.36222 -9.04042 -9.02901 -8.76444 -8.70610 -8.55300 -6.99285 -6.31476 -4.04389 1.00673 1.13954 2.38483 2.96029 2.96874 3.27753 3.37896 3.41823 3.51025 3.54525 4.20877 4.26176 4.28376 4.36752 4.46958 4.71897 4.73350 4.78562 4.83073 4.89352 4.99864 5.07387 5.09842 5.16809 5.24309 5.31372 5.32470 5.41548 5.55217 5.63744 5.70889 5.82733 5.96501 6.00799 6.08725 6.15502 6.24788 6.30199 6.41893 6.48353 6.57957 6.66657 6.78673 6.98770 7.92265 7.96372 8.41127 9.14428 10.78025 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.003326 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.235473 B = 8417.389151 C = 9350.899272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.093 3.907 3 Si 0.861 3.139 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.239 1.239 7 C -0.502 4.502 8 H 0.088 0.912 9 S -0.218 6.218 10 C -0.078 4.078 11 C -0.139 4.139 12 C 0.049 3.951 13 N -0.521 5.521 14 C 0.028 3.972 15 C 0.115 3.885 16 N -0.719 5.719 17 C 0.533 3.467 18 O -0.537 6.537 19 C 0.107 3.893 20 H 0.094 0.906 21 C -0.111 4.111 22 C -0.063 4.063 23 C -0.141 4.141 24 C -0.086 4.086 25 C -0.162 4.162 26 C 0.130 3.870 27 F -0.130 7.130 28 H 0.271 0.729 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.401 0.599 40 H 0.145 0.855 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.484 -15.667 -0.176 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.115 4.115 3 Si 0.686 3.314 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.163 1.163 7 C -0.650 4.650 8 H 0.106 0.894 9 S 0.009 5.991 10 C -0.227 4.227 11 C -0.178 4.178 12 C -0.080 4.080 13 N -0.245 5.245 14 C -0.100 4.100 15 C -0.010 4.010 16 N -0.372 5.372 17 C 0.318 3.682 18 O -0.413 6.413 19 C -0.004 4.004 20 H 0.112 0.888 21 C -0.113 4.113 22 C -0.082 4.082 23 C -0.159 4.159 24 C -0.104 4.104 25 C -0.180 4.180 26 C 0.110 3.890 27 F -0.109 7.109 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.237 0.763 40 H 0.163 0.837 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 19.191 -15.164 -0.645 24.467 hybrid contribution -0.555 0.991 -0.201 1.154 sum 18.635 -14.173 -0.846 23.428 Atomic orbital electron populations 1.69931 1.05913 1.27733 1.48195 1.24784 0.94489 0.98961 0.93312 0.86685 0.81691 0.83303 0.79742 1.19365 1.20052 1.16273 1.22101 0.86931 0.97420 1.58500 0.89371 1.84174 1.11940 1.05422 1.97545 1.22941 0.96598 0.99309 1.03838 1.22006 0.96559 0.96588 1.02684 1.22492 0.86154 0.95386 1.03961 1.62788 1.05108 1.55344 1.01242 1.22571 0.93073 0.96766 0.97578 1.21539 0.94202 1.02217 0.83022 1.45508 1.10283 1.75267 1.06143 1.19821 0.88973 0.75437 0.83974 1.90783 1.73432 1.49477 1.27604 1.20452 0.91027 0.99099 0.89850 0.88838 1.19233 1.03623 0.96917 0.91556 1.21036 0.94899 0.91327 1.00894 1.21206 1.01291 1.00245 0.93163 1.21039 0.97597 0.95522 0.96237 1.21109 1.02168 0.94914 0.99846 1.17504 0.96953 0.82313 0.92222 1.91522 1.85532 1.43102 1.90717 0.91942 0.91387 0.91160 0.91018 0.91732 0.89662 0.89308 0.92656 0.87764 0.90697 0.89990 0.76341 0.83721 0.85306 0.85148 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 2 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16 3 Si 0.86 21.48 27.74 -169.99 -4.71 16.77 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.24 -5.82 6.74 56.52 0.38 -5.43 16 7 C -0.50 -14.43 10.04 30.94 0.31 -14.12 16 8 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 9 S -0.22 -5.23 19.41 -107.50 -2.09 -7.32 16 10 C -0.08 -1.43 5.67 37.16 0.21 -1.22 16 11 C -0.14 -1.93 4.37 -26.73 -0.12 -2.05 16 12 C 0.05 0.53 4.75 -3.82 -0.02 0.51 16 13 N -0.52 -5.12 3.59 -229.48 -0.82 -5.95 16 14 C 0.03 0.22 4.51 -3.68 -0.02 0.21 16 15 C 0.11 0.72 7.39 -4.33 -0.03 0.69 16 16 N -0.72 -6.54 5.52 -61.07 -0.34 -6.88 16 17 C 0.53 6.86 7.37 -11.67 -0.09 6.77 16 18 O -0.54 -8.85 16.33 5.56 0.09 -8.76 16 19 C 0.11 1.32 1.74 -70.23 -0.12 1.20 16 20 H 0.09 1.30 6.12 -51.93 -0.32 0.98 16 21 C -0.11 -1.43 4.10 -104.55 -0.43 -1.86 16 22 C -0.06 -0.68 7.90 -39.59 -0.31 -0.99 16 23 C -0.14 -1.33 10.04 -39.57 -0.40 -1.73 16 24 C -0.09 -0.83 10.04 -39.59 -0.40 -1.23 16 25 C -0.16 -1.88 10.03 -39.52 -0.40 -2.27 16 26 C 0.13 1.82 6.72 -39.42 -0.26 1.55 16 27 F -0.13 -2.08 16.13 2.25 0.04 -2.04 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 30 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 31 H 0.07 0.95 6.91 -51.93 -0.36 0.59 16 32 H 0.06 0.98 6.42 -51.93 -0.33 0.64 16 33 H 0.09 0.99 6.08 -51.93 -0.32 0.68 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.51 7.07 -51.93 -0.37 0.14 16 36 H 0.10 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.40 3.10 8.84 -40.82 -0.36 2.73 16 40 H 0.15 1.37 6.91 -52.49 -0.36 1.01 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -34.40 361.46 -9.57 -43.97 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.79 Total: 2.49 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -2.16 Total: -11.91 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.39 Total: -38.65 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.77 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -2.09 Total: -7.32 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.40 -9.57 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374584333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.391 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds