Wall clock time and date at job start Tue Mar 31 2020 20:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47261 * 270.00445 * 3 2 1 5 5 H 1.48502 * 109.47019 * 30.00217 * 3 2 1 6 6 H 1.48497 * 109.46973 * 150.00276 * 3 2 1 7 7 C 1.38804 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99944 * 359.97438 * 7 2 1 9 9 S 1.76195 * 119.99902 * 179.97438 * 7 2 1 10 10 C 1.81001 * 100.00170 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47556 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47084 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46827 * 174.88753 * 12 11 10 14 14 C 1.47191 * 110.99846 * 52.13311 * 13 12 11 15 15 C 1.52964 * 108.74150 * 167.64819 * 14 13 12 16 16 N 1.46009 * 110.04903 * 50.27729 * 15 14 13 17 17 C 1.33723 * 122.92402 * 341.83943 * 16 15 14 18 18 O 1.21275 * 118.62311 * 181.68903 * 17 16 15 19 19 C 1.46901 * 111.00179 * 289.24250 * 13 12 11 20 20 H 1.08996 * 109.38738 * 53.50408 * 19 13 12 21 21 C 1.50703 * 109.29780 * 293.76706 * 19 13 12 22 22 C 1.38217 * 120.01328 * 339.53748 * 21 19 13 23 23 C 1.38232 * 120.02303 * 179.97438 * 22 21 19 24 24 C 1.38262 * 120.05045 * 0.02562 * 23 22 21 25 25 C 1.38177 * 120.02771 * 0.02562 * 24 23 22 26 26 C 1.38441 * 120.01134 * 159.25747 * 21 19 13 27 27 F 1.35099 * 120.02198 * 359.97438 * 26 21 19 28 28 H 0.97003 * 120.00267 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46969 * 59.99700 * 10 9 7 30 30 H 1.09002 * 109.47116 * 300.00051 * 10 9 7 31 31 H 1.09000 * 109.46735 * 60.00002 * 11 10 9 32 32 H 1.09002 * 109.46936 * 300.00144 * 11 10 9 33 33 H 1.08994 * 109.46953 * 54.89269 * 12 11 10 34 34 H 1.08997 * 109.46925 * 294.88571 * 12 11 10 35 35 H 1.09001 * 109.59576 * 287.40881 * 14 13 12 36 36 H 1.08997 * 109.59740 * 47.70605 * 14 13 12 37 37 H 1.09003 * 109.38012 * 290.09885 * 15 14 13 38 38 H 1.09004 * 109.37380 * 170.44933 * 15 14 13 39 39 H 0.96994 * 118.54349 * 162.12155 * 16 15 14 40 40 H 1.07996 * 119.99007 * 359.95295 * 22 21 19 41 41 H 1.08000 * 119.97325 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.98866 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00952 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7722 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5957 -3.2363 -0.0008 12 6 5.8614 -4.7431 0.0001 13 7 7.3050 -4.9859 -0.1233 14 6 8.0562 -4.2238 0.8874 15 6 9.4960 -4.7392 0.9216 16 7 10.0453 -4.7799 -0.4306 17 6 9.2800 -4.7563 -1.5270 18 8 9.8173 -4.8250 -2.6121 19 6 7.7825 -4.6479 -1.4708 20 1 7.4840 -3.6286 -1.7154 21 6 7.1742 -5.6001 -2.4680 22 6 6.6750 -6.8178 -2.0457 23 6 6.1165 -7.6911 -2.9601 24 6 6.0572 -7.3480 -4.2982 25 6 6.5566 -6.1316 -4.7229 26 6 7.1101 -5.2531 -3.8067 27 9 7.5922 -4.0605 -4.2197 28 1 -0.4851 0.8400 0.0004 29 1 3.6433 -3.4318 -0.8906 30 1 3.6440 -3.4314 0.8893 31 1 6.0386 -2.7892 0.8891 32 1 6.0387 -2.7894 -0.8909 33 1 5.3424 -5.2040 -0.8403 34 1 5.4986 -5.1754 0.9325 35 1 8.0530 -3.1660 0.6245 36 1 7.5939 -4.3587 1.8652 37 1 9.5112 -5.7420 1.3484 38 1 10.1028 -4.0763 1.5385 39 1 11.0079 -4.8303 -0.5385 40 1 6.7215 -7.0872 -1.0009 41 1 5.7270 -8.6425 -2.6293 42 1 5.6210 -8.0312 -5.0119 43 1 6.5105 -5.8641 -5.7682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374584333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:46 Heat of formation + Delta-G solvation = -72.069812 kcal Electronic energy + Delta-G solvation = -27289.800425 eV Core-core repulsion = 23374.483935 eV Total energy + Delta-G solvation = -3915.316490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.89253 -41.92434 -39.69933 -38.82745 -36.31100 -34.70394 -34.18530 -32.48966 -31.46026 -29.95583 -28.56291 -27.92614 -25.55520 -24.64762 -23.56034 -22.80058 -22.37941 -20.01659 -19.55282 -18.65716 -18.41956 -18.08323 -17.50127 -17.13326 -17.00043 -16.58484 -16.48719 -16.05415 -15.97065 -15.65268 -15.43777 -15.09595 -14.99831 -14.91099 -14.59180 -14.12732 -13.96181 -13.72519 -13.48311 -13.28371 -13.16160 -13.04733 -12.92225 -12.81990 -12.48182 -12.44859 -12.17397 -11.92261 -11.81205 -11.64655 -11.18852 -11.13842 -10.61676 -10.12414 -9.87106 -9.62823 -9.55289 -9.01556 -8.53737 -6.24899 0.15735 0.28901 1.10392 1.29457 1.42364 1.44279 1.73388 2.19400 2.22091 2.54534 2.67005 2.69678 2.84679 3.36040 3.37129 3.59751 3.79074 3.84367 3.91706 3.99799 4.03552 4.11360 4.19996 4.35150 4.37606 4.42096 4.49585 4.61559 4.64056 4.81566 4.88326 4.91829 4.97829 5.03307 5.13960 5.19797 5.22073 5.37658 5.47816 5.65058 5.68108 5.69448 5.90749 5.97105 6.08762 6.16523 6.90849 7.09155 8.59363 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012298 B = 0.003326 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.235473 B = 8417.389151 C = 9350.899272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.040 3.960 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.261 1.261 6 H -0.229 1.229 7 C -0.520 4.520 8 H 0.052 0.948 9 S -0.230 6.230 10 C -0.063 4.063 11 C -0.126 4.126 12 C 0.059 3.941 13 N -0.505 5.505 14 C 0.019 3.981 15 C 0.114 3.886 16 N -0.707 5.707 17 C 0.527 3.473 18 O -0.584 6.584 19 C 0.111 3.889 20 H 0.069 0.931 21 C -0.126 4.126 22 C -0.067 4.067 23 C -0.134 4.134 24 C -0.085 4.085 25 C -0.173 4.173 26 C 0.087 3.913 27 F -0.154 7.154 28 H 0.277 0.723 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.042 0.958 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.408 0.592 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.898 -17.153 1.656 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.164 4.164 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.186 1.186 6 H -0.152 1.152 7 C -0.667 4.667 8 H 0.071 0.929 9 S -0.003 6.003 10 C -0.212 4.212 11 C -0.166 4.166 12 C -0.070 4.070 13 N -0.229 5.229 14 C -0.108 4.108 15 C -0.010 4.010 16 N -0.359 5.359 17 C 0.312 3.688 18 O -0.464 6.464 19 C -0.001 4.001 20 H 0.086 0.914 21 C -0.128 4.128 22 C -0.085 4.085 23 C -0.152 4.152 24 C -0.102 4.102 25 C -0.192 4.192 26 C 0.067 3.933 27 F -0.133 7.133 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.061 0.939 36 H 0.149 0.851 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.245 0.755 40 H 0.178 0.822 41 H 0.180 0.820 42 H 0.180 0.820 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 20.620 -16.659 1.238 26.538 hybrid contribution -0.999 1.295 -0.746 1.797 sum 19.622 -15.364 0.492 24.926 Atomic orbital electron populations 1.70029 1.07584 1.29070 1.49260 1.25727 0.95354 1.02570 0.92798 0.85759 0.80879 0.78986 0.79987 1.19159 1.18557 1.15202 1.22320 0.89930 0.96256 1.58223 0.92941 1.83911 1.07809 1.10960 1.97579 1.23012 0.99802 0.94676 1.03736 1.21948 0.92880 0.99220 1.02562 1.22420 0.86957 0.92666 1.04938 1.62873 1.04459 1.55139 1.00406 1.22812 0.94156 0.95899 0.97953 1.21820 0.93435 1.04143 0.81558 1.45537 1.10565 1.73267 1.06499 1.19960 0.89333 0.75284 0.84194 1.90755 1.74146 1.51947 1.29531 1.20318 0.90905 0.97787 0.91112 0.91404 1.19428 1.04162 0.97964 0.91222 1.21275 0.94618 0.90655 1.01951 1.21651 0.99729 1.01030 0.92795 1.21449 0.96605 0.94943 0.97241 1.21388 1.02161 0.95513 1.00103 1.18017 0.99143 0.82445 0.93665 1.91447 1.86227 1.44571 1.91019 0.91403 0.92339 0.90369 0.89712 0.93329 0.90441 0.86749 0.93939 0.85148 0.88664 0.86954 0.75477 0.82232 0.82015 0.82020 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.67 13.97 21.65 0.30 -56.36 16 2 C 0.04 2.37 5.50 84.86 0.47 2.84 16 3 Si 0.92 44.32 27.74 68.60 1.90 46.23 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.23 -10.53 6.74 99.48 0.67 -9.86 16 7 C -0.52 -30.51 10.04 67.96 0.68 -29.83 16 8 H 0.05 3.34 8.03 -2.91 -0.02 3.31 16 9 S -0.23 -10.98 19.41 -56.49 -1.10 -12.08 16 10 C -0.06 -2.28 5.67 71.98 0.41 -1.88 16 11 C -0.13 -3.34 4.37 30.59 0.13 -3.21 16 12 C 0.06 1.16 4.75 86.30 0.41 1.57 16 13 N -0.50 -8.85 3.59 -879.93 -3.16 -12.01 16 14 C 0.02 0.25 4.51 86.24 0.39 0.64 16 15 C 0.11 1.03 7.39 86.46 0.64 1.67 16 16 N -0.71 -11.68 5.52 -466.11 -2.57 -14.25 16 17 C 0.53 13.57 7.37 87.68 0.65 14.21 16 18 O -0.58 -20.03 16.33 -3.01 -0.05 -20.08 16 19 C 0.11 2.72 1.74 43.28 0.08 2.80 16 20 H 0.07 2.00 6.12 -2.39 -0.01 1.99 16 21 C -0.13 -3.24 4.10 -19.82 -0.08 -3.33 16 22 C -0.07 -1.32 7.90 22.26 0.18 -1.15 16 23 C -0.13 -2.19 10.04 22.27 0.22 -1.97 16 24 C -0.08 -1.48 10.04 22.26 0.22 -1.25 16 25 C -0.17 -4.06 10.03 22.31 0.22 -3.84 16 26 C 0.09 2.55 6.72 22.38 0.15 2.70 16 27 F -0.15 -5.35 16.13 44.97 0.73 -4.62 16 28 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 29 H 0.06 2.22 8.14 -2.40 -0.02 2.20 16 30 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.08 2.05 6.91 -2.39 -0.02 2.03 16 32 H 0.05 1.47 6.42 -2.39 -0.02 1.45 16 33 H 0.08 1.68 6.08 -2.39 -0.01 1.67 16 34 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 0.68 7.07 -2.39 -0.02 0.67 16 36 H 0.13 1.06 8.05 -2.39 -0.02 1.04 16 37 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.41 5.67 8.84 -92.71 -0.82 4.85 16 40 H 0.16 2.57 6.91 -2.91 -0.02 2.55 16 41 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 43 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -78.90 361.46 1.00 -77.90 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.19 Total: 15.31 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 4.77 Total: -20.02 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -5.43 Total: -82.63 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.05 Total: -20.08 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.73 Total: -4.62 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 16 Polarization: -10.98 SS G_CDS: -1.10 Total: -12.08 kcal Total: -78.90 1.00 -77.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374584333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.826 kcal (2) G-P(sol) polarization free energy of solvation -78.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds