Wall clock time and date at job start Tue Mar 31 2020 20:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99537 * 2 1 4 4 H 1.48494 * 109.47205 * 269.99944 * 3 2 1 5 5 H 1.48507 * 109.47131 * 30.00346 * 3 2 1 6 6 H 1.48502 * 109.47215 * 149.99972 * 3 2 1 7 7 C 1.37867 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00277 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00054 * 179.97438 * 7 2 1 10 10 S 1.81403 * 109.47169 * 179.97438 * 9 7 2 11 11 C 1.81404 * 103.00025 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47103 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00006 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99807 * 180.02562 * 12 11 10 15 15 C 1.47082 * 120.87891 * 179.97438 * 14 12 11 16 16 C 1.53244 * 108.51839 * 231.19933 * 15 14 12 17 17 N 1.46898 * 109.33890 * 306.17018 * 16 15 14 18 18 C 1.39825 * 110.99646 * 187.25296 * 17 16 15 19 19 C 1.38874 * 120.04923 * 359.72462 * 18 17 16 20 20 C 1.38120 * 119.94787 * 179.76676 * 19 18 17 21 21 C 1.38468 * 120.05083 * 0.51209 * 20 19 18 22 22 F 1.35094 * 119.95330 * 179.76786 * 21 20 19 23 23 C 1.38462 * 120.09545 * 359.73789 * 21 20 19 24 24 C 1.38119 * 120.05062 * 0.02562 * 23 21 20 25 25 C 1.46895 * 111.27082 * 63.10643 * 17 16 15 26 26 C 1.47075 * 120.88469 * 0.02562 * 14 12 11 27 27 H 0.96999 * 120.00652 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46962 * 60.00652 * 9 7 2 29 29 H 1.08988 * 109.47580 * 300.00606 * 9 7 2 30 30 H 1.09006 * 109.46928 * 60.00024 * 11 10 9 31 31 H 1.09003 * 109.46816 * 300.00559 * 11 10 9 32 32 H 1.08999 * 109.63044 * 111.48881 * 15 14 12 33 33 H 1.08996 * 109.62937 * 350.90678 * 15 14 12 34 34 H 1.09003 * 109.49182 * 186.21128 * 16 15 14 35 35 H 1.08995 * 109.51078 * 66.14357 * 16 15 14 36 36 H 1.07998 * 120.02572 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.97906 * 180.27121 * 20 19 18 38 38 H 1.08006 * 119.97401 * 179.97438 * 23 21 20 39 39 H 1.08003 * 120.02440 * 180.02562 * 24 23 21 40 40 H 1.08995 * 109.49596 * 56.85157 * 25 17 16 41 41 H 1.09002 * 109.49663 * 176.93652 * 25 17 16 42 42 H 1.09005 * 109.63131 * 248.51218 * 26 14 12 43 43 H 1.09005 * 109.62428 * 9.08861 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0000 10 16 4.1164 -2.9041 0.0016 11 6 5.9189 -2.6995 0.0015 12 6 6.5782 -4.0546 0.0022 13 8 5.8990 -5.0594 0.0032 14 7 7.9226 -4.1498 0.0027 15 6 8.5864 -5.4623 0.0040 16 6 9.6181 -5.4849 1.1368 17 7 10.5192 -4.3332 0.9971 18 6 11.5728 -4.4073 1.9134 19 6 11.6514 -5.4751 2.7978 20 6 12.6957 -5.5487 3.6988 21 6 13.6579 -4.5534 3.7279 22 9 14.6758 -4.6250 4.6131 23 6 13.5786 -3.4852 2.8505 24 6 12.5388 -3.4100 1.9445 25 6 9.7896 -3.0658 1.1352 26 6 8.7648 -2.9441 0.0032 27 1 -0.4851 0.8400 0.0004 28 1 3.8752 -0.6795 0.8895 29 1 3.8746 -0.6806 -0.8903 30 1 6.2219 -2.1471 0.8910 31 1 6.2219 -2.1487 -0.8890 32 1 9.0876 -5.6201 -0.9510 33 1 7.8469 -6.2465 0.1666 34 1 10.1962 -6.4075 1.0840 35 1 9.1055 -5.4313 2.0972 36 1 10.8989 -6.2496 2.7782 37 1 12.7597 -6.3812 4.3839 38 1 14.3299 -2.7097 2.8751 39 1 12.4775 -2.5768 1.2600 40 1 9.2743 -3.0456 2.0955 41 1 10.4919 -2.2339 1.0813 42 1 9.2833 -2.8592 -0.9519 43 1 8.1433 -2.0634 0.1653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:17 Heat of formation + Delta-G solvation = -30.029654 kcal Electronic energy + Delta-G solvation = -25710.247782 eV Core-core repulsion = 21796.754290 eV Total energy + Delta-G solvation = -3913.493492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.21669 -41.02523 -39.62237 -37.61072 -34.88488 -33.06098 -32.49365 -31.41099 -30.46313 -29.47560 -29.12157 -26.74182 -24.90787 -23.00627 -22.71661 -22.43895 -21.40630 -19.36417 -18.42271 -17.59571 -17.00640 -16.87286 -16.60017 -16.23351 -15.97127 -15.94539 -15.47087 -15.20782 -15.11892 -14.75276 -14.17845 -14.14132 -13.99236 -13.76609 -13.44690 -13.22903 -13.10330 -12.96811 -12.69583 -12.51760 -12.29533 -12.16795 -12.02716 -11.80264 -11.73167 -11.31082 -10.86001 -10.53771 -10.20520 -10.16880 -9.85575 -9.67025 -9.61928 -8.94783 -8.93091 -8.73990 -8.27873 -6.81844 -6.19814 -4.22286 0.67434 0.73119 2.10932 2.57192 2.78923 2.99468 3.17793 3.24382 3.25558 3.27289 3.58745 3.87962 4.13360 4.24338 4.27830 4.37172 4.37554 4.52702 4.63596 4.70425 4.73963 4.84972 4.89512 4.99818 5.07328 5.10646 5.18149 5.20006 5.31767 5.38686 5.38847 5.43314 5.58017 5.64454 5.69046 5.70639 6.14141 6.20233 6.39184 6.51282 6.63727 6.67545 7.12111 7.39917 8.08261 8.28341 8.83717 9.35274 10.92294 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.019676 B = 0.002047 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.718391 B =13674.705434 C =14527.198460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.880 3.120 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.084 0.916 9 C 0.031 3.969 10 S -0.196 6.196 11 C -0.140 4.140 12 C 0.537 3.463 13 O -0.510 6.510 14 N -0.621 5.621 15 C 0.118 3.882 16 C 0.035 3.965 17 N -0.486 5.486 18 C 0.105 3.895 19 C -0.143 4.143 20 C -0.125 4.125 21 C 0.068 3.932 22 F -0.143 7.143 23 C -0.127 4.127 24 C -0.112 4.112 25 C 0.041 3.959 26 C 0.110 3.890 27 H 0.268 0.732 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.641 -7.064 4.076 31.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.706 3.294 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.102 0.898 9 C -0.117 4.117 10 S 0.030 5.970 11 C -0.290 4.290 12 C 0.325 3.675 13 O -0.383 6.383 14 N -0.358 5.358 15 C -0.005 4.005 16 C -0.093 4.093 17 N -0.201 5.201 18 C 0.007 3.993 19 C -0.164 4.164 20 C -0.144 4.144 21 C 0.048 3.952 22 F -0.122 7.122 23 C -0.146 4.146 24 C -0.132 4.132 25 C -0.085 4.085 26 C -0.014 4.014 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 29.650 -8.439 3.579 31.035 hybrid contribution 1.181 2.196 0.838 2.630 sum 30.831 -6.243 4.417 31.765 Atomic orbital electron populations 1.69864 1.06142 1.27292 1.49472 1.24866 0.94762 0.98710 0.94197 0.86787 0.80236 0.83612 0.78733 1.19904 1.20812 1.19165 1.20430 0.86796 0.95363 1.52606 0.89760 1.21541 1.01379 0.89813 0.99006 1.87467 0.95448 1.16243 1.97839 1.23491 1.01679 0.97988 1.05884 1.19962 0.81169 0.90858 0.75553 1.90739 1.62174 1.37747 1.47669 1.48114 1.05229 1.07061 1.75369 1.21675 0.94538 0.86022 0.98265 1.22760 0.93892 0.93583 0.99040 1.59078 1.10196 1.04088 1.46772 1.19010 0.93998 0.95510 0.90812 1.21223 0.99671 1.00296 0.95185 1.21030 0.94245 0.98791 1.00342 1.17649 0.88021 0.97409 0.92101 1.91494 1.57608 1.96402 1.66671 1.21031 0.99760 0.97980 0.95854 1.20657 0.93617 0.99409 0.99551 1.22694 0.96222 0.90751 0.98801 1.21872 0.92327 0.88140 0.99039 0.92196 0.94776 0.95176 0.88140 0.87982 0.90522 0.87924 0.88541 0.92690 0.84436 0.84651 0.84500 0.84570 0.92790 0.88534 0.90039 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 3 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 7 C -0.51 -14.60 9.68 -34.44 -0.33 -14.94 16 8 H 0.08 2.66 7.96 -52.49 -0.42 2.24 16 9 C 0.03 0.72 4.77 36.01 0.17 0.89 16 10 S -0.20 -4.23 20.79 -107.50 -2.24 -6.46 16 11 C -0.14 -2.09 4.79 36.00 0.17 -1.92 16 12 C 0.54 7.96 7.73 -10.99 -0.08 7.87 16 13 O -0.51 -9.62 15.32 5.56 0.09 -9.54 16 14 N -0.62 -6.58 3.01 -172.50 -0.52 -7.10 16 15 C 0.12 1.06 6.60 -3.60 -0.02 1.04 16 16 C 0.03 0.25 4.30 -3.70 -0.02 0.23 16 17 N -0.49 -3.47 4.68 -170.84 -0.80 -4.27 16 18 C 0.10 0.76 5.65 -83.74 -0.47 0.28 16 19 C -0.14 -0.99 8.83 -39.39 -0.35 -1.33 16 20 C -0.12 -0.89 10.02 -39.54 -0.40 -1.28 16 21 C 0.07 0.54 7.30 -39.41 -0.29 0.26 16 22 F -0.14 -1.29 17.26 2.25 0.04 -1.26 16 23 C -0.13 -0.86 10.02 -39.54 -0.40 -1.25 16 24 C -0.11 -0.73 9.14 -39.39 -0.36 -1.09 16 25 C 0.04 0.27 5.42 -3.74 -0.02 0.25 16 26 C 0.11 0.81 6.50 -3.64 -0.02 0.79 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.03 0.78 7.20 -51.92 -0.37 0.41 16 29 H 0.03 0.68 7.57 -51.93 -0.39 0.28 16 30 H 0.10 1.30 7.66 -51.92 -0.40 0.90 16 31 H 0.10 1.32 8.00 -51.92 -0.42 0.90 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.06 7.06 -51.93 -0.37 0.70 16 34 H 0.10 0.55 6.90 -51.93 -0.36 0.19 16 35 H 0.05 0.43 7.81 -51.93 -0.41 0.03 16 36 H 0.14 0.77 5.81 -52.49 -0.30 0.46 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 39 H 0.14 0.66 7.15 -52.48 -0.38 0.28 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.46 6.66 -51.93 -0.35 0.11 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.64 6.02 -51.93 -0.31 0.33 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -33.86 364.08 -10.10 -43.97 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.75 Total: -2.62 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.52 Total: -8.05 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.54 Total: -37.41 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: -4.23 SS G_CDS: -2.24 Total: -6.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.86 -10.10 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.936 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds