Wall clock time and date at job start Tue Mar 31 2020 20:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00274 * 2 1 4 4 H 1.48504 * 109.47141 * 270.00606 * 3 2 1 5 5 H 1.48504 * 109.47111 * 30.00176 * 3 2 1 6 6 H 1.48493 * 109.47427 * 150.00251 * 3 2 1 7 7 C 1.37878 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00367 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99821 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46994 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47150 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47204 * 305.00435 * 11 10 9 13 13 N 1.46905 * 109.47034 * 65.00256 * 11 10 9 14 14 C 1.50698 * 109.47049 * 184.99898 * 11 10 9 15 15 O 1.21280 * 120.00486 * 259.99729 * 14 11 10 16 16 N 1.34779 * 119.99940 * 80.00455 * 14 11 10 17 17 C 1.46498 * 120.00101 * 179.97438 * 16 14 11 18 18 H 1.08999 * 108.61210 * 36.96667 * 17 16 14 19 19 C 1.51878 * 108.65311 * 154.99883 * 17 16 14 20 20 C 1.53544 * 108.95841 * 181.36911 * 19 17 16 21 21 S 1.81616 * 107.27716 * 287.30370 * 20 19 17 22 22 C 1.76473 * 102.61111 * 46.42013 * 21 20 19 23 23 C 1.39602 * 117.68495 * 167.18957 * 22 21 20 24 24 C 1.37749 * 120.66903 * 179.52122 * 23 22 21 25 25 C 1.38520 * 119.48305 * 359.91090 * 24 23 22 26 26 F 1.35096 * 120.02407 * 180.32382 * 25 24 23 27 27 C 1.37932 * 119.95119 * 0.29992 * 25 24 23 28 28 C 1.38148 * 122.29875 * 347.10774 * 22 21 20 29 29 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47034 * 60.00328 * 9 7 2 31 31 H 1.08993 * 109.47708 * 300.00117 * 9 7 2 32 32 H 1.09001 * 109.46854 * 60.00351 * 10 9 7 33 33 H 1.09003 * 109.47122 * 300.00639 * 10 9 7 34 34 H 1.00901 * 110.99869 * 60.00199 * 13 11 10 35 35 H 1.00896 * 110.99543 * 183.95322 * 13 11 10 36 36 H 0.97003 * 119.99744 * 359.97438 * 16 14 11 37 37 H 1.08998 * 109.55575 * 301.20862 * 19 17 16 38 38 H 1.08996 * 109.55923 * 61.52681 * 19 17 16 39 39 H 1.08999 * 109.89773 * 46.74639 * 20 19 17 40 40 H 1.08996 * 109.89266 * 167.78548 * 20 19 17 41 41 H 1.08002 * 119.66572 * 359.50291 * 23 22 21 42 42 H 1.08002 * 120.25890 * 179.89141 * 24 23 22 43 43 H 1.08001 * 119.47274 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0009 12 1 5.9149 -2.0471 -0.8427 13 7 6.0411 -2.0512 1.2543 14 6 6.0538 -4.0520 -0.1246 15 8 6.4279 -4.6511 0.8613 16 7 6.0874 -4.6521 -1.3310 17 6 6.5763 -6.0279 -1.4513 18 1 6.2509 -6.5905 -0.5763 19 6 5.9601 -6.6557 -2.6894 20 6 6.4410 -8.1095 -2.8034 21 16 8.1841 -8.0627 -3.3112 22 6 8.8673 -6.8448 -2.2320 23 6 10.2581 -6.7468 -2.1624 24 6 10.8566 -5.8112 -1.3476 25 6 10.0668 -4.9597 -0.5927 26 9 10.6422 -4.0337 0.2051 27 6 8.6924 -5.0576 -0.6565 28 6 8.0763 -6.0041 -1.4730 29 1 -0.4850 0.8400 0.0004 30 1 3.8751 -0.6804 0.8889 31 1 3.8745 -0.6800 -0.8910 32 1 3.6578 -3.1505 -0.8908 33 1 3.6584 -3.1503 0.8892 34 1 5.7176 -2.5801 2.0504 35 1 7.0476 -1.9807 1.2519 36 1 5.7880 -4.1730 -2.1195 37 1 4.8735 -6.6364 -2.6059 38 1 6.2697 -6.0987 -3.5736 39 1 6.3491 -8.6074 -1.8382 40 1 5.8498 -8.6381 -3.5510 41 1 10.8710 -7.4114 -2.7532 42 1 11.9333 -5.7423 -1.2976 43 1 8.0841 -4.3901 -0.0643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424067078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:54 Heat of formation + Delta-G solvation = -57.771956 kcal Electronic energy + Delta-G solvation = -26949.222312 eV Core-core repulsion = 23034.525824 eV Total energy + Delta-G solvation = -3914.696489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.09716 -40.92755 -39.07124 -36.70296 -35.41260 -33.26091 -32.80708 -31.32887 -30.69711 -30.55091 -27.66695 -26.15158 -23.76717 -23.51603 -23.18017 -21.16849 -20.63025 -19.98247 -18.32658 -17.53959 -17.44754 -17.03479 -16.76171 -16.36124 -15.85194 -15.74813 -15.63240 -15.17299 -14.63916 -14.43446 -14.17411 -13.96810 -13.66727 -13.56632 -13.52519 -13.18304 -13.05903 -13.00882 -12.61859 -12.45411 -11.83145 -11.81005 -11.57998 -11.47016 -11.09844 -10.92085 -10.54369 -10.51758 -9.98191 -9.85318 -9.82938 -9.64348 -9.49986 -9.26629 -9.15117 -8.57071 -8.47393 -7.76102 -6.02694 -4.00685 0.61936 0.81145 1.11860 1.89856 2.45048 2.83612 3.19200 3.33786 3.42091 3.49798 3.83827 4.11463 4.14865 4.30760 4.46057 4.48778 4.59126 4.68898 4.75074 4.80879 4.94434 5.03250 5.08957 5.25230 5.27647 5.33419 5.35308 5.48719 5.53247 5.57555 5.74459 5.79575 5.85057 6.15202 6.22564 6.39491 6.46776 6.80499 7.11206 7.29548 7.34502 7.54057 7.58271 7.82751 8.00742 8.53991 9.01570 9.60281 11.10754 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.002884 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.843094 B = 9705.242065 C =10991.542470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.522 4.522 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.087 4.087 11 C 0.075 3.925 12 H 0.100 0.900 13 N -0.810 5.810 14 C 0.484 3.516 15 O -0.542 6.542 16 N -0.723 5.723 17 C 0.180 3.820 18 H 0.102 0.898 19 C -0.131 4.131 20 C -0.102 4.102 21 S -0.115 6.115 22 C -0.083 4.083 23 C -0.077 4.077 24 C -0.137 4.137 25 C 0.095 3.905 26 F -0.137 7.137 27 C -0.133 4.133 28 C -0.068 4.068 29 H 0.262 0.738 30 H 0.034 0.966 31 H 0.009 0.991 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.351 0.649 35 H 0.336 0.664 36 H 0.408 0.592 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.420 -16.730 -7.887 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.042 4.042 10 C -0.125 4.125 11 C -0.041 4.041 12 H 0.118 0.882 13 N -0.338 5.338 14 C 0.271 3.729 15 O -0.420 6.420 16 N -0.375 5.375 17 C 0.075 3.925 18 H 0.120 0.880 19 C -0.170 4.170 20 C -0.251 4.251 21 S 0.127 5.873 22 C -0.196 4.196 23 C -0.100 4.100 24 C -0.157 4.157 25 C 0.073 3.927 26 F -0.116 7.116 27 C -0.153 4.153 28 C -0.075 4.075 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.165 0.835 35 H 0.148 0.852 36 H 0.244 0.756 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.139 0.861 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 20.545 -17.063 -8.235 27.948 hybrid contribution 0.307 1.038 0.875 1.392 sum 20.853 -16.025 -7.360 27.310 Atomic orbital electron populations 1.69913 1.06382 1.26886 1.51337 1.25011 0.94693 0.99238 0.94523 0.86778 0.80726 0.83445 0.78424 1.20491 1.21584 1.18399 1.21162 0.89699 0.94329 1.50852 0.91322 1.19489 0.96389 0.91075 0.97236 1.21477 0.87697 1.01722 1.01590 1.21922 0.99609 0.87262 0.95298 0.88206 1.59011 1.15442 1.55999 1.03332 1.22802 0.76268 0.91275 0.82550 1.90686 1.47991 1.66334 1.37022 1.46288 1.66192 1.14201 1.10836 1.19448 0.88255 0.84837 1.00007 0.88001 1.21887 1.02673 0.94293 0.98175 1.23761 0.94814 0.99845 1.06638 1.85543 1.07998 1.47787 1.45926 1.21359 0.96261 1.00505 1.01524 1.20702 0.92211 0.98455 0.98622 1.21063 1.00597 0.96258 0.97804 1.17584 0.91401 0.90245 0.93459 1.91517 1.84819 1.63665 1.71564 1.21833 0.93366 1.00420 0.99729 1.19787 0.95417 0.95447 0.96865 0.92798 0.94742 0.97320 0.92139 0.92121 0.83460 0.85234 0.75650 0.88231 0.89242 0.88474 0.86084 0.84440 0.84126 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.85 13.96 55.43 0.77 -27.08 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 8 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 9 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 10 C -0.09 -1.57 4.78 -26.73 -0.13 -1.70 16 11 C 0.07 1.10 3.15 -68.86 -0.22 0.88 16 12 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 13 N -0.81 -12.12 8.44 -5.65 -0.05 -12.17 16 14 C 0.48 6.53 5.23 -10.99 -0.06 6.47 16 15 O -0.54 -8.66 13.92 5.56 0.08 -8.58 16 16 N -0.72 -7.61 4.77 -55.81 -0.27 -7.88 16 17 C 0.18 1.77 2.36 -69.97 -0.16 1.60 16 18 H 0.10 1.16 7.59 -51.93 -0.39 0.77 16 19 C -0.13 -0.91 5.23 -27.02 -0.14 -1.05 16 20 C -0.10 -0.63 6.53 37.44 0.24 -0.39 16 21 S -0.11 -0.92 21.99 -107.50 -2.36 -3.29 16 22 C -0.08 -0.82 6.05 -39.11 -0.24 -1.06 16 23 C -0.08 -0.69 9.65 -39.25 -0.38 -1.07 16 24 C -0.14 -1.30 10.04 -39.66 -0.40 -1.70 16 25 C 0.09 1.13 7.28 -39.59 -0.29 0.84 16 26 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 27 C -0.13 -1.67 8.69 -39.28 -0.34 -2.01 16 28 C -0.07 -0.74 5.64 -104.56 -0.59 -1.33 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.03 0.82 6.81 -51.93 -0.35 0.47 16 31 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.35 5.37 8.58 -39.29 -0.34 5.03 16 35 H 0.34 4.40 9.06 -39.29 -0.36 4.04 16 36 H 0.41 3.53 8.57 -40.82 -0.35 3.18 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.60 8.03 -51.93 -0.42 0.18 16 39 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.14 0.94 8.05 -52.49 -0.42 0.52 16 42 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.15 2.10 3.81 -52.49 -0.20 1.90 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -32.94 363.45 -9.98 -42.92 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.76 Total: 9.13 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -3.24 Total: -13.82 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.46 Total: -47.13 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.36 Total: -3.29 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.94 -9.98 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424067078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.851 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds