Wall clock time and date at job start Tue Mar 31 2020 20:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86799 * 120.00274 * 2 1 4 4 H 1.48504 * 109.47141 * 270.00606 * 3 2 1 5 5 H 1.48504 * 109.47111 * 30.00176 * 3 2 1 6 6 H 1.48493 * 109.47427 * 150.00251 * 3 2 1 7 7 C 1.37878 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00367 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99821 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46994 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47150 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47204 * 305.00435 * 11 10 9 13 13 N 1.46905 * 109.47034 * 65.00256 * 11 10 9 14 14 C 1.50698 * 109.47049 * 184.99898 * 11 10 9 15 15 O 1.21280 * 120.00486 * 259.99729 * 14 11 10 16 16 N 1.34779 * 119.99940 * 80.00455 * 14 11 10 17 17 C 1.46498 * 120.00101 * 179.97438 * 16 14 11 18 18 H 1.08999 * 108.61210 * 36.96667 * 17 16 14 19 19 C 1.51878 * 108.65311 * 154.99883 * 17 16 14 20 20 C 1.53544 * 108.95841 * 181.36911 * 19 17 16 21 21 S 1.81616 * 107.27716 * 287.30370 * 20 19 17 22 22 C 1.76473 * 102.61111 * 46.42013 * 21 20 19 23 23 C 1.39602 * 117.68495 * 167.18957 * 22 21 20 24 24 C 1.37749 * 120.66903 * 179.52122 * 23 22 21 25 25 C 1.38520 * 119.48305 * 359.91090 * 24 23 22 26 26 F 1.35096 * 120.02407 * 180.32382 * 25 24 23 27 27 C 1.37932 * 119.95119 * 0.29992 * 25 24 23 28 28 C 1.38148 * 122.29875 * 347.10774 * 22 21 20 29 29 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47034 * 60.00328 * 9 7 2 31 31 H 1.08993 * 109.47708 * 300.00117 * 9 7 2 32 32 H 1.09001 * 109.46854 * 60.00351 * 10 9 7 33 33 H 1.09003 * 109.47122 * 300.00639 * 10 9 7 34 34 H 1.00901 * 110.99869 * 60.00199 * 13 11 10 35 35 H 1.00896 * 110.99543 * 183.95322 * 13 11 10 36 36 H 0.97003 * 119.99744 * 359.97438 * 16 14 11 37 37 H 1.08998 * 109.55575 * 301.20862 * 19 17 16 38 38 H 1.08996 * 109.55923 * 61.52681 * 19 17 16 39 39 H 1.08999 * 109.89773 * 46.74639 * 20 19 17 40 40 H 1.08996 * 109.89266 * 167.78548 * 20 19 17 41 41 H 1.08002 * 119.66572 * 359.50291 * 23 22 21 42 42 H 1.08002 * 120.25890 * 179.89141 * 24 23 22 43 43 H 1.08001 * 119.47274 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0009 12 1 5.9149 -2.0471 -0.8427 13 7 6.0411 -2.0512 1.2543 14 6 6.0538 -4.0520 -0.1246 15 8 6.4279 -4.6511 0.8613 16 7 6.0874 -4.6521 -1.3310 17 6 6.5763 -6.0279 -1.4513 18 1 6.2509 -6.5905 -0.5763 19 6 5.9601 -6.6557 -2.6894 20 6 6.4410 -8.1095 -2.8034 21 16 8.1841 -8.0627 -3.3112 22 6 8.8673 -6.8448 -2.2320 23 6 10.2581 -6.7468 -2.1624 24 6 10.8566 -5.8112 -1.3476 25 6 10.0668 -4.9597 -0.5927 26 9 10.6422 -4.0337 0.2051 27 6 8.6924 -5.0576 -0.6565 28 6 8.0763 -6.0041 -1.4730 29 1 -0.4850 0.8400 0.0004 30 1 3.8751 -0.6804 0.8889 31 1 3.8745 -0.6800 -0.8910 32 1 3.6578 -3.1505 -0.8908 33 1 3.6584 -3.1503 0.8892 34 1 5.7176 -2.5801 2.0504 35 1 7.0476 -1.9807 1.2519 36 1 5.7880 -4.1730 -2.1195 37 1 4.8735 -6.6364 -2.6059 38 1 6.2697 -6.0987 -3.5736 39 1 6.3491 -8.6074 -1.8382 40 1 5.8498 -8.6381 -3.5510 41 1 10.8710 -7.4114 -2.7532 42 1 11.9333 -5.7423 -1.2976 43 1 8.0841 -4.3901 -0.0643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424067078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:53 Heat of formation + Delta-G solvation = -80.263840 kcal Electronic energy + Delta-G solvation = -26950.197634 eV Core-core repulsion = 23034.525824 eV Total energy + Delta-G solvation = -3915.671810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.00544 -41.88035 -39.97266 -37.54448 -36.78623 -34.80349 -34.05889 -32.30365 -32.09558 -31.44401 -28.85100 -27.41578 -24.96074 -24.42885 -24.00178 -22.23612 -21.90879 -21.22391 -19.12856 -18.95636 -18.34112 -18.28631 -17.93163 -17.29437 -16.99091 -16.69233 -16.42824 -16.25002 -16.11054 -15.59033 -15.18252 -15.08770 -14.74129 -14.60104 -14.39462 -14.28957 -14.08617 -13.84476 -13.76788 -13.70140 -13.46219 -12.81469 -12.60441 -12.50076 -12.42295 -12.13922 -11.99067 -11.74710 -11.60533 -11.32576 -11.18897 -11.13388 -10.71086 -10.59325 -10.41991 -10.07255 -9.71728 -8.41571 -8.25157 -6.28067 -0.16497 0.02516 0.49841 1.28976 1.37208 1.39438 1.43384 1.56862 1.95100 2.38027 2.41299 3.06556 3.11779 3.39260 3.42066 3.51281 3.69433 3.75974 3.82487 3.97573 4.04763 4.11947 4.19523 4.23983 4.33510 4.53858 4.56587 4.68640 4.71633 4.80203 4.81957 4.90571 5.00649 5.02612 5.07218 5.14163 5.29108 5.50089 5.65294 5.67507 5.74077 6.01643 6.32326 6.33673 6.45114 6.80787 7.01194 7.36697 8.91659 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.002884 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.843094 B = 9705.242065 C =10991.542470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.003 3.997 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.246 1.246 7 C -0.530 4.530 8 H 0.031 0.969 9 C 0.001 3.999 10 C -0.077 4.077 11 C 0.083 3.917 12 H 0.119 0.881 13 N -0.819 5.819 14 C 0.490 3.510 15 O -0.569 6.569 16 N -0.709 5.709 17 C 0.182 3.818 18 H 0.084 0.916 19 C -0.125 4.125 20 C -0.099 4.099 21 S -0.108 6.108 22 C -0.089 4.089 23 C -0.076 4.076 24 C -0.130 4.130 25 C 0.071 3.929 26 F -0.149 7.149 27 C -0.153 4.153 28 C -0.078 4.078 29 H 0.265 0.735 30 H 0.027 0.973 31 H 0.022 0.978 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.347 0.653 35 H 0.346 0.654 36 H 0.419 0.581 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.147 0.853 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.426 -17.308 -9.794 29.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.170 1.170 7 C -0.568 4.568 8 H 0.049 0.951 9 C -0.036 4.036 10 C -0.116 4.116 11 C -0.032 4.032 12 H 0.137 0.863 13 N -0.348 5.348 14 C 0.276 3.724 15 O -0.449 6.449 16 N -0.361 5.361 17 C 0.077 3.923 18 H 0.102 0.898 19 C -0.164 4.164 20 C -0.248 4.248 21 S 0.135 5.865 22 C -0.202 4.202 23 C -0.098 4.098 24 C -0.151 4.151 25 C 0.049 3.951 26 F -0.128 7.128 27 C -0.174 4.174 28 C -0.085 4.085 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.257 0.743 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.165 0.835 41 H 0.181 0.819 42 H 0.183 0.817 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 22.570 -17.663 -10.185 30.416 hybrid contribution -0.361 1.080 1.444 1.839 sum 22.209 -16.583 -8.741 29.062 Atomic orbital electron populations 1.70069 1.08353 1.28018 1.53167 1.25981 0.95520 1.03485 0.94299 0.85663 0.79562 0.78248 0.79215 1.18919 1.21645 1.16955 1.21561 0.92469 0.92889 1.49847 0.95104 1.19378 0.92905 0.94094 0.97252 1.21255 0.90363 0.98658 1.01285 1.21721 0.96991 0.88594 0.95932 0.86303 1.59011 1.16372 1.56059 1.03327 1.22420 0.76236 0.90674 0.83062 1.90680 1.49371 1.66683 1.38200 1.46156 1.65038 1.14659 1.10285 1.19534 0.88021 0.83974 1.00817 0.89818 1.21879 1.03142 0.94589 0.96757 1.23883 0.93770 0.99529 1.07584 1.85535 1.09337 1.46660 1.44995 1.21632 0.96835 1.00494 1.01238 1.21066 0.92226 0.98298 0.98260 1.21340 1.01700 0.95275 0.96746 1.17856 0.91634 0.91099 0.94464 1.91478 1.84933 1.64264 1.72092 1.21810 0.93725 1.01264 1.00577 1.19853 0.95856 0.95649 0.97149 0.92673 0.95449 0.95992 0.91060 0.93997 0.83922 0.84043 0.74349 0.87024 0.88455 0.88343 0.83532 0.81926 0.81716 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 2 C 0.00 0.20 5.47 84.66 0.46 0.66 16 3 Si 0.95 44.42 27.47 68.60 1.88 46.30 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 7 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 9 C 0.00 0.05 3.93 29.85 0.12 0.17 16 10 C -0.08 -2.77 4.78 30.60 0.15 -2.63 16 11 C 0.08 2.35 3.15 44.17 0.14 2.49 16 12 H 0.12 2.91 8.14 -2.39 -0.02 2.90 16 13 N -0.82 -24.05 8.44 -171.80 -1.45 -25.50 16 14 C 0.49 12.99 5.23 87.66 0.46 13.45 16 15 O -0.57 -18.42 13.92 -3.03 -0.04 -18.46 16 16 N -0.71 -14.17 4.77 -448.87 -2.14 -16.31 16 17 C 0.18 3.37 2.36 43.67 0.10 3.47 16 18 H 0.08 1.88 7.59 -2.39 -0.02 1.87 16 19 C -0.12 -1.42 5.23 30.41 0.16 -1.26 16 20 C -0.10 -0.95 6.53 72.16 0.47 -0.48 16 21 S -0.11 -1.45 21.99 -56.49 -1.24 -2.69 16 22 C -0.09 -1.58 6.05 22.58 0.14 -1.44 16 23 C -0.08 -1.19 9.65 22.48 0.22 -0.97 16 24 C -0.13 -2.26 10.04 22.22 0.22 -2.04 16 25 C 0.07 1.67 7.28 22.26 0.16 1.83 16 26 F -0.15 -3.86 17.27 44.97 0.78 -3.09 16 27 C -0.15 -3.84 8.69 22.47 0.20 -3.64 16 28 C -0.08 -1.62 5.64 -19.82 -0.11 -1.73 16 29 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.03 1.27 6.81 -2.39 -0.02 1.26 16 31 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.35 10.69 8.58 -89.69 -0.77 9.92 16 35 H 0.35 8.88 9.06 -89.70 -0.81 8.07 16 36 H 0.42 6.45 8.57 -92.71 -0.79 5.66 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 1.01 8.03 -2.39 -0.02 0.99 16 39 H 0.10 0.98 8.08 -2.39 -0.02 0.96 16 40 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.16 1.69 8.05 -2.91 -0.02 1.67 16 42 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.13 3.77 3.81 -2.91 -0.01 3.76 16 Total: -1.00 -73.01 363.45 -0.14 -73.15 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -1.35 Total: 28.22 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 3.13 Total: -21.93 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -3.29 Total: -101.51 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.04 Total: -18.46 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -1.24 Total: -2.69 kcal Total: -73.01 -0.14 -73.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424067078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.114 kcal (2) G-P(sol) polarization free energy of solvation -73.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds