Wall clock time and date at job start Tue Mar 31 2020 20:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99460 * 2 1 4 4 H 1.48500 * 109.46717 * 240.00007 * 3 2 1 5 5 H 1.48496 * 109.47210 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47029 * 120.00154 * 3 2 1 7 7 C 1.37872 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46947 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47258 * 54.99913 * 11 10 9 13 13 N 1.46900 * 109.47002 * 295.00158 * 11 10 9 14 14 C 1.50701 * 109.47155 * 175.00251 * 11 10 9 15 15 O 1.21282 * 119.99721 * 100.00049 * 14 11 10 16 16 N 1.34774 * 119.99912 * 279.99737 * 14 11 10 17 17 C 1.46501 * 119.99908 * 179.97438 * 16 14 11 18 18 H 1.09004 * 108.50201 * 322.97416 * 17 16 14 19 19 C 1.51865 * 108.65700 * 205.00183 * 17 16 14 20 20 C 1.53541 * 108.95206 * 178.60988 * 19 17 16 21 21 S 1.81620 * 107.27135 * 72.71019 * 20 19 17 22 22 C 1.76476 * 102.61199 * 313.58811 * 21 20 19 23 23 C 1.39603 * 117.68752 * 192.76624 * 22 21 20 24 24 C 1.37752 * 120.67086 * 180.48169 * 23 22 21 25 25 C 1.38523 * 119.48175 * 0.05655 * 24 23 22 26 26 F 1.35092 * 120.02459 * 179.69797 * 25 24 23 27 27 C 1.37938 * 119.94862 * 359.72733 * 25 24 23 28 28 C 1.38150 * 122.29615 * 12.86460 * 22 21 20 29 29 H 0.96997 * 120.00697 * 0.02562 * 1 2 3 30 30 H 1.09011 * 109.46625 * 60.00368 * 9 7 2 31 31 H 1.08995 * 109.47334 * 300.00312 * 9 7 2 32 32 H 1.09003 * 109.46642 * 60.00584 * 10 9 7 33 33 H 1.08995 * 109.47453 * 300.00449 * 10 9 7 34 34 H 1.00901 * 111.00184 * 176.04886 * 13 11 10 35 35 H 1.00900 * 111.00102 * 300.00198 * 13 11 10 36 36 H 0.96995 * 119.99873 * 0.02562 * 16 14 11 37 37 H 1.09000 * 109.55643 * 58.77555 * 19 17 16 38 38 H 1.08995 * 109.56141 * 298.45557 * 19 17 16 39 39 H 1.09002 * 109.89752 * 313.26781 * 20 19 17 40 40 H 1.08998 * 109.89992 * 192.14572 * 20 19 17 41 41 H 1.07999 * 119.66675 * 0.47532 * 23 22 21 42 42 H 1.07999 * 120.26311 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.46983 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2456 -3.6620 0.0015 11 6 1.4806 -4.9870 0.0020 12 1 0.7881 -5.0071 -0.8395 13 7 0.7294 -5.1182 1.2576 14 6 2.4553 -6.1297 -0.1220 15 8 2.7875 -6.7531 0.8639 16 7 2.9576 -6.4590 -1.3285 17 6 3.9055 -7.5695 -1.4490 18 1 4.5557 -7.5658 -0.5741 19 6 4.7564 -7.3498 -2.6876 20 6 5.7760 -8.4921 -2.8012 21 16 4.8651 -9.9795 -3.3078 22 6 3.4691 -9.9627 -2.2284 23 6 2.6892 -11.1185 -2.1586 24 6 1.5798 -11.1694 -1.3436 25 6 1.2374 -10.0600 -0.5882 26 9 0.1481 -10.0958 0.2102 27 6 2.0090 -8.9184 -0.6521 28 6 3.1360 -8.8574 -1.4696 29 1 -0.4851 0.8400 -0.0004 30 1 0.6242 -2.5575 -0.8881 31 1 0.6249 -2.5563 0.8919 32 1 2.8728 -3.6038 0.8910 33 1 2.8716 -3.6046 -0.8889 34 1 0.1651 -5.9547 1.2556 35 1 1.3496 -5.1023 2.0533 36 1 2.6922 -5.9602 -2.1169 37 1 5.2821 -6.3985 -2.6050 38 1 4.1187 -7.3405 -3.5715 39 1 6.2537 -8.6604 -1.8360 40 1 6.5282 -8.2449 -3.5503 41 1 2.9583 -11.9814 -2.7496 42 1 0.9814 -12.0671 -1.2943 43 1 1.7351 -8.0580 -0.0595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424067080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:57 Heat of formation + Delta-G solvation = -60.735364 kcal Electronic energy + Delta-G solvation = -26887.145402 eV Core-core repulsion = 22972.320410 eV Total energy + Delta-G solvation = -3914.824992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.05372 -40.86891 -39.01334 -36.65349 -35.27383 -33.21379 -32.83831 -31.28888 -30.66253 -30.15584 -27.50191 -25.89344 -23.73675 -23.58027 -23.15560 -21.15997 -20.78348 -19.90126 -18.28684 -17.48063 -17.39950 -16.97978 -16.50796 -16.12018 -15.77306 -15.68410 -15.57663 -15.09668 -14.60665 -14.40259 -14.35678 -13.91138 -13.63024 -13.53951 -13.49436 -13.14743 -13.01116 -12.94699 -12.36521 -12.07452 -11.78848 -11.76544 -11.49899 -11.43044 -10.90991 -10.75393 -10.62684 -10.51065 -10.26299 -9.86047 -9.79965 -9.49149 -9.40116 -9.22327 -9.05318 -8.42776 -8.26486 -7.73452 -5.96891 -3.99604 0.65457 0.84890 1.14241 1.92064 2.52542 2.89115 3.23539 3.33385 3.38475 3.40343 3.87509 4.14531 4.18128 4.33388 4.46460 4.50443 4.64286 4.74161 4.81140 4.86558 4.99578 5.09077 5.10871 5.27834 5.37173 5.38493 5.43811 5.52475 5.56261 5.72812 5.77855 5.83990 5.89249 6.21300 6.35685 6.50712 6.56963 7.01648 7.22119 7.43907 7.70615 7.72384 7.91517 8.07699 8.09583 8.44048 9.08136 9.63762 11.13903 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.002761 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.225054 B =10138.105933 C =11538.172239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.100 0.900 13 N -0.806 5.806 14 C 0.483 3.517 15 O -0.544 6.544 16 N -0.724 5.724 17 C 0.180 3.820 18 H 0.102 0.898 19 C -0.131 4.131 20 C -0.102 4.102 21 S -0.116 6.116 22 C -0.084 4.084 23 C -0.077 4.077 24 C -0.137 4.137 25 C 0.095 3.905 26 F -0.137 7.137 27 C -0.133 4.133 28 C -0.067 4.067 29 H 0.260 0.740 30 H 0.013 0.987 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.334 0.666 35 H 0.349 0.651 36 H 0.408 0.592 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.496 -23.204 -7.888 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.118 0.882 13 N -0.334 5.334 14 C 0.270 3.730 15 O -0.423 6.423 16 N -0.376 5.376 17 C 0.074 3.926 18 H 0.119 0.881 19 C -0.170 4.170 20 C -0.250 4.250 21 S 0.127 5.873 22 C -0.197 4.197 23 C -0.100 4.100 24 C -0.157 4.157 25 C 0.074 3.926 26 F -0.115 7.115 27 C -0.153 4.153 28 C -0.075 4.075 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.163 0.837 36 H 0.243 0.757 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.139 0.861 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.583 -23.549 -8.241 26.384 hybrid contribution 0.330 1.021 0.899 1.400 sum 8.914 -22.528 -7.341 25.315 Atomic orbital electron populations 1.69958 1.05955 1.26600 1.50587 1.24989 0.94803 0.99057 0.95420 0.86710 0.79616 0.83428 0.78519 1.20365 1.21309 1.20314 1.21224 0.92833 0.91315 1.50925 0.93049 1.19012 0.93527 0.89760 0.98257 1.21666 0.98878 0.92038 1.00708 1.21902 0.93409 0.93109 0.95317 0.88218 1.58976 1.26828 1.44371 1.03181 1.22940 0.82024 0.85528 0.82460 1.90676 1.60526 1.53995 1.37062 1.46308 1.46556 1.33838 1.10889 1.19440 0.89945 0.83275 0.99910 0.88073 1.21882 0.97342 0.99547 0.98236 1.23759 1.00064 0.94635 1.06581 1.85530 1.20988 1.34804 1.46020 1.21352 1.00433 0.96352 1.01563 1.20695 0.94147 0.96530 0.98637 1.21063 0.98610 0.98251 0.97816 1.17589 0.86074 0.95551 0.93421 1.91518 1.51550 1.96935 1.71514 1.21854 0.94884 0.98895 0.99695 1.19785 0.96216 0.94635 0.96842 0.92988 0.96858 0.94636 0.92767 0.92775 0.85367 0.83687 0.75664 0.88313 0.89236 0.88500 0.86139 0.84465 0.84128 0.83107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 10 C -0.09 -1.81 4.78 -26.73 -0.13 -1.93 16 11 C 0.08 1.23 3.15 -68.86 -0.22 1.02 16 12 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 13 N -0.81 -13.05 8.44 -5.65 -0.05 -13.10 16 14 C 0.48 6.85 5.24 -10.99 -0.06 6.79 16 15 O -0.54 -9.02 13.91 5.56 0.08 -8.94 16 16 N -0.72 -8.02 4.77 -55.81 -0.27 -8.29 16 17 C 0.18 1.83 2.36 -69.98 -0.16 1.66 16 18 H 0.10 1.18 7.59 -51.93 -0.39 0.79 16 19 C -0.13 -0.93 5.23 -27.03 -0.14 -1.08 16 20 C -0.10 -0.65 6.53 37.44 0.24 -0.40 16 21 S -0.12 -0.95 21.99 -107.50 -2.36 -3.32 16 22 C -0.08 -0.85 6.05 -39.10 -0.24 -1.09 16 23 C -0.08 -0.72 9.65 -39.25 -0.38 -1.10 16 24 C -0.14 -1.35 10.04 -39.65 -0.40 -1.74 16 25 C 0.10 1.17 7.28 -39.59 -0.29 0.89 16 26 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 27 C -0.13 -1.73 8.69 -39.27 -0.34 -2.07 16 28 C -0.07 -0.76 5.63 -104.56 -0.59 -1.35 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.04 0.96 7.75 -51.93 -0.40 0.56 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.33 4.78 9.06 -39.29 -0.36 4.42 16 35 H 0.35 5.72 8.58 -39.29 -0.34 5.38 16 36 H 0.41 3.79 8.57 -40.82 -0.35 3.44 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 39 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.14 0.97 8.05 -52.49 -0.42 0.55 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 43 H 0.15 2.20 3.81 -52.48 -0.20 2.00 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -32.21 367.05 -10.36 -42.57 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.80 Total: 9.81 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -3.24 Total: -13.03 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.42 Total: -47.25 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.36 Total: -3.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.21 -10.36 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424067080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.167 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds