Wall clock time and date at job start Tue Mar 31 2020 20:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86811 * 119.99770 * 2 1 4 4 H 1.48501 * 109.47161 * 270.00251 * 3 2 1 5 5 H 1.48499 * 109.46989 * 30.00518 * 3 2 1 6 6 H 1.48502 * 109.46847 * 150.00116 * 3 2 1 7 7 C 1.37876 * 120.00490 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99595 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00076 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47527 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46696 * 54.99921 * 11 10 9 13 13 N 1.46904 * 109.47086 * 295.00232 * 11 10 9 14 14 C 1.50693 * 109.47389 * 175.00155 * 11 10 9 15 15 O 1.21286 * 120.00070 * 100.00066 * 14 11 10 16 16 N 1.34782 * 119.99843 * 279.99835 * 14 11 10 17 17 C 1.40016 * 119.99906 * 184.58695 * 16 14 11 18 18 C 1.39360 * 119.85248 * 324.84696 * 17 16 14 19 19 C 1.36502 * 120.59952 * 180.02562 * 18 17 16 20 20 C 1.39788 * 119.98027 * 359.97438 * 19 18 17 21 21 N 1.35848 * 133.49138 * 179.68288 * 20 19 18 22 22 C 1.30074 * 109.65380 * 179.91879 * 21 20 19 23 23 C 1.50707 * 124.95348 * 180.15452 * 22 21 20 24 24 F 1.39900 * 109.46871 * 30.26140 * 23 22 21 25 25 F 1.39898 * 109.46945 * 150.26571 * 23 22 21 26 26 N 1.36127 * 110.09289 * 0.38371 * 22 21 20 27 27 H 0.97005 * 126.35228 * 179.76823 * 26 22 21 28 28 C 1.38069 * 107.29487 * 359.76474 * 26 22 21 29 29 C 1.38459 * 119.84646 * 144.86812 * 17 16 14 30 30 H 0.97001 * 120.00569 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47585 * 59.99889 * 9 7 2 32 32 H 1.09005 * 109.47467 * 299.99580 * 9 7 2 33 33 H 1.08998 * 109.46761 * 59.99660 * 10 9 7 34 34 H 1.09001 * 109.46862 * 299.99737 * 10 9 7 35 35 H 1.00896 * 110.99961 * 176.04240 * 13 11 10 36 36 H 1.00900 * 110.99801 * 299.99588 * 13 11 10 37 37 H 0.97001 * 120.00071 * 4.59408 * 16 14 11 38 38 H 1.08000 * 119.70623 * 0.03836 * 18 17 16 39 39 H 1.08003 * 120.01148 * 180.02562 * 19 18 17 40 40 H 1.09003 * 109.46724 * 270.26547 * 23 22 21 41 41 H 1.07999 * 120.18764 * 359.95267 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5517 -2.6364 -0.0022 12 1 5.9156 -2.0466 0.8391 13 7 6.0403 -2.0515 -1.2581 14 6 6.0541 -4.0517 0.1217 15 8 6.4275 -4.6511 -0.8644 16 7 6.0887 -4.6513 1.3283 17 6 6.6442 -5.9299 1.4590 18 6 6.4929 -6.8601 0.4324 19 6 7.0277 -8.1111 0.5440 20 6 7.7350 -8.4682 1.6956 21 7 8.3616 -9.6063 2.0927 22 6 8.8832 -9.4301 3.2712 23 6 9.6603 -10.4706 4.0358 24 9 10.3170 -11.3169 3.1358 25 9 10.6025 -9.8401 4.8554 26 7 8.6206 -8.1704 3.7153 27 1 8.8957 -7.7911 4.5646 28 6 7.8899 -7.5327 2.7325 29 6 7.3409 -6.2643 2.6078 30 1 -0.4851 0.8400 0.0004 31 1 3.8752 -0.6802 0.8888 32 1 3.8746 -0.6799 -0.8912 33 1 3.6579 -3.1504 -0.8907 34 1 3.6587 -3.1500 0.8893 35 1 7.0468 -1.9808 -1.2565 36 1 5.7162 -2.5807 -2.0536 37 1 5.7287 -4.1971 2.1061 38 1 5.9479 -6.5889 -0.4596 39 1 6.9051 -8.8244 -0.2576 40 1 8.9765 -11.0552 4.6513 41 1 7.4574 -5.5418 3.4020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424164357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:19 Heat of formation + Delta-G solvation = -92.814079 kcal Electronic energy + Delta-G solvation = -27625.752728 eV Core-core repulsion = 23175.616274 eV Total energy + Delta-G solvation = -4450.136454 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.19719 -48.23029 -43.35426 -41.56587 -38.73246 -36.82921 -35.55675 -34.77650 -34.28424 -32.28247 -31.46789 -30.75184 -28.64759 -27.54455 -25.42104 -24.00792 -23.23277 -22.34348 -22.14369 -21.29540 -19.48304 -19.27264 -18.99870 -18.75032 -18.49477 -18.09753 -17.58850 -17.11981 -16.50716 -16.43163 -16.27549 -16.03824 -15.57379 -15.42726 -15.10927 -15.00547 -14.95615 -14.68140 -14.56578 -14.24805 -14.03328 -13.96148 -13.55547 -13.28714 -12.92817 -12.81270 -12.62277 -12.46269 -12.08325 -11.93150 -11.78005 -11.58571 -11.36898 -11.26922 -11.14869 -11.00981 -10.69339 -9.73665 -9.55702 -8.98752 -8.22919 -6.26071 -0.40685 0.29994 1.17063 1.32598 1.43493 1.44612 1.56741 1.58342 1.94318 2.28839 2.42894 2.65705 2.96265 3.13973 3.26088 3.46907 3.63442 3.71990 3.75045 3.88215 4.04810 4.07132 4.13620 4.21174 4.26432 4.33953 4.72329 4.84119 4.86608 4.97104 5.02901 5.17007 5.22173 5.35231 5.53877 5.68058 5.72701 5.75717 6.04896 6.12315 6.31135 6.34570 6.50223 6.51321 6.83315 6.97852 7.38469 8.93809 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.027930 B = 0.001862 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.266200 B =15030.291312 C =15228.829888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.238 1.238 7 C -0.530 4.530 8 H 0.029 0.971 9 C 0.001 3.999 10 C -0.082 4.082 11 C 0.089 3.911 12 H 0.129 0.871 13 N -0.818 5.818 14 C 0.490 3.510 15 O -0.553 6.553 16 N -0.657 5.657 17 C 0.170 3.830 18 C -0.134 4.134 19 C -0.050 4.050 20 C 0.004 3.996 21 N -0.483 5.483 22 C 0.199 3.801 23 C 0.368 3.632 24 F -0.190 7.190 25 F -0.192 7.192 26 N -0.565 5.565 27 H 0.445 0.555 28 C 0.078 3.922 29 C -0.133 4.133 30 H 0.264 0.736 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.350 0.650 36 H 0.348 0.652 37 H 0.430 0.570 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.194 0.806 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.943 -17.846 13.494 32.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.161 1.161 7 C -0.568 4.568 8 H 0.047 0.953 9 C -0.036 4.036 10 C -0.120 4.120 11 C -0.027 4.027 12 H 0.147 0.853 13 N -0.347 5.347 14 C 0.277 3.723 15 O -0.430 6.430 16 N -0.304 5.304 17 C 0.073 3.927 18 C -0.156 4.156 19 C -0.070 4.070 20 C -0.115 4.115 21 N -0.204 5.204 22 C -0.070 4.070 23 C 0.312 3.688 24 F -0.171 7.171 25 F -0.173 7.173 26 N -0.179 5.179 27 H 0.288 0.712 28 C -0.034 4.034 29 C -0.157 4.157 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.270 0.730 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.211 0.789 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 22.704 -18.174 12.444 31.633 hybrid contribution 0.121 0.756 0.544 0.939 sum 22.825 -17.418 12.988 31.513 Atomic orbital electron populations 1.70084 1.08429 1.27979 1.53202 1.26034 0.95558 1.03646 0.94366 0.85608 0.79683 0.78065 0.78905 1.19953 1.21580 1.16103 1.21580 0.92640 0.92798 1.49766 0.95302 1.19382 0.92721 0.94043 0.97466 1.21308 0.90549 0.98778 1.01409 1.21724 0.96715 0.87802 0.96433 0.85339 1.59026 1.16713 1.55784 1.03192 1.22785 0.76317 0.90794 0.82381 1.90675 1.48210 1.66356 1.37805 1.43613 1.59238 1.15292 1.12240 1.17530 0.95224 0.85151 0.94787 1.20839 1.02367 0.92167 1.00187 1.20013 0.95361 0.96109 0.95518 1.19229 1.04596 0.90657 0.96985 1.70202 1.13801 1.26086 1.10352 1.24352 1.01926 0.87254 0.93484 1.20057 0.84140 0.82747 0.81811 1.93063 1.82909 1.70894 1.70239 1.93055 1.68231 1.83741 1.72306 1.42569 1.45614 1.10945 1.18803 0.71160 1.18528 0.99117 0.95373 0.90372 1.19692 1.01344 0.94466 1.00194 0.92746 0.95495 0.95425 0.93917 0.91118 0.83615 0.83850 0.73033 0.84932 0.84299 0.78946 0.81702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.67 13.96 21.45 0.30 -59.37 16 2 C 0.00 0.00 5.47 84.66 0.46 0.46 16 3 Si 0.95 43.63 27.47 68.60 1.88 45.51 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 7 C -0.53 -29.60 9.66 25.60 0.25 -29.36 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C 0.00 0.06 3.93 29.85 0.12 0.18 16 10 C -0.08 -2.81 4.78 30.60 0.15 -2.67 16 11 C 0.09 2.28 3.15 44.17 0.14 2.42 16 12 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 13 N -0.82 -21.65 8.44 -171.80 -1.45 -23.10 16 14 C 0.49 12.28 6.91 87.65 0.61 12.88 16 15 O -0.55 -17.12 13.67 -3.05 -0.04 -17.16 16 16 N -0.66 -12.77 5.33 -303.37 -1.62 -14.39 16 17 C 0.17 3.60 6.30 38.16 0.24 3.84 16 18 C -0.13 -3.35 8.61 22.13 0.19 -3.16 16 19 C -0.05 -1.21 10.04 22.24 0.22 -0.99 16 20 C 0.00 0.09 7.23 39.45 0.29 0.37 16 21 N -0.48 -11.21 11.17 -179.83 -2.01 -13.22 16 22 C 0.20 3.09 7.62 137.90 1.05 4.14 16 23 C 0.37 3.15 5.86 71.24 0.42 3.57 16 24 F -0.19 -2.87 17.24 44.97 0.78 -2.09 16 25 F -0.19 -1.72 17.26 44.97 0.78 -0.94 16 26 N -0.57 -7.08 6.16 -179.21 -1.10 -8.18 16 27 H 0.45 2.24 8.96 -92.70 -0.83 1.41 16 28 C 0.08 1.44 7.30 38.84 0.28 1.73 16 29 C -0.13 -2.18 9.98 22.45 0.22 -1.95 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 32 H 0.03 1.22 7.18 -2.38 -0.02 1.20 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 35 H 0.35 7.69 9.06 -89.70 -0.81 6.88 16 36 H 0.35 9.79 8.58 -89.69 -0.77 9.02 16 37 H 0.43 5.75 8.82 -92.71 -0.82 4.93 16 38 H 0.13 3.78 6.20 -2.91 -0.02 3.76 16 39 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.19 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -79.13 359.29 0.01 -79.12 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -2.14 Total: 22.36 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 4.63 Total: -8.53 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -5.88 Total: -118.27 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.04 Total: -17.16 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 1.55 Total: -3.03 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.51 kcal Total: -79.13 0.01 -79.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424164357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.694 kcal (2) G-P(sol) polarization free energy of solvation -79.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds