Wall clock time and date at job start Tue Mar 31 2020 20:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00364 * 2 1 4 4 H 1.48501 * 109.47168 * 270.00321 * 3 2 1 5 5 H 1.48504 * 109.46992 * 30.00276 * 3 2 1 6 6 H 1.48500 * 109.47173 * 150.00253 * 3 2 1 7 7 C 1.37883 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99303 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00085 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47083 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99945 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00126 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99688 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99799 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47271 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.46827 * 59.99904 * 15 14 13 17 17 O 1.42901 * 109.47113 * 300.00050 * 15 14 13 18 18 C 1.53005 * 109.47055 * 180.02562 * 15 14 13 19 19 O 1.42904 * 109.46591 * 184.99969 * 18 15 14 20 20 C 1.35974 * 116.99372 * 179.97438 * 19 18 15 21 21 C 1.38700 * 119.99014 * 359.97438 * 20 19 18 22 22 C 1.38215 * 120.08204 * 179.80612 * 21 20 19 23 23 C 1.38536 * 120.10111 * 0.42214 * 22 21 20 24 24 C 1.39249 * 119.91732 * 359.57658 * 23 22 21 25 25 C 1.38534 * 119.88170 * 0.21069 * 24 23 22 26 26 O 1.36508 * 108.64735 * 180.25048 * 24 23 22 27 27 C 1.43979 * 105.49623 * 342.69903 * 26 24 23 28 28 O 1.36605 * 131.46210 * 179.87975 * 23 22 21 29 29 H 0.97006 * 119.99925 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47109 * 59.99955 * 9 7 2 31 31 H 1.09000 * 109.47631 * 300.00243 * 9 7 2 32 32 H 0.96998 * 119.99857 * 0.02562 * 10 9 7 33 33 H 0.96998 * 120.00114 * 359.97438 * 13 11 10 34 34 H 1.09004 * 109.47330 * 59.99492 * 14 13 11 35 35 H 1.09005 * 109.47570 * 300.00027 * 14 13 11 36 36 H 0.96705 * 114.00146 * 299.99971 * 17 15 14 37 37 H 1.08991 * 109.46957 * 64.99981 * 18 15 14 38 38 H 1.08997 * 109.46978 * 304.99818 * 18 15 14 39 39 H 1.07996 * 119.95522 * 0.02562 * 21 20 19 40 40 H 1.08003 * 119.95314 * 180.30840 * 22 21 20 41 41 H 1.08001 * 120.00455 * 180.02562 * 25 24 23 42 42 H 1.09002 * 110.57307 * 268.58048 * 27 26 24 43 43 H 1.09001 * 110.56895 * 145.71437 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1150 -1.8975 -0.0005 13 7 5.7740 -4.0924 -0.0013 14 6 7.2143 -4.3601 -0.0018 15 6 7.4521 -5.8716 -0.0016 16 1 7.0007 -6.3105 -0.8913 17 8 6.8612 -6.4466 1.1655 18 6 8.9564 -6.1512 -0.0015 19 8 9.1794 -7.5578 -0.1187 20 6 10.4723 -7.9786 -0.1346 21 6 11.5030 -7.0553 -0.0399 22 6 12.8179 -7.4812 -0.0518 23 6 13.1101 -8.8305 -0.1673 24 6 12.0770 -9.7592 -0.2625 25 6 10.7597 -9.3304 -0.2458 26 8 12.6200 -11.0078 -0.3601 27 6 13.9947 -10.8011 -0.7351 28 8 14.3014 -9.4979 -0.2056 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8745 -0.6801 -0.8911 32 1 3.3694 -3.3126 -0.0010 33 1 5.1437 -4.8296 -0.0013 34 1 7.6658 -3.9215 0.8881 35 1 7.6653 -3.9212 -0.8919 36 1 7.2157 -6.1018 1.9965 37 1 9.3929 -5.7904 0.9298 38 1 9.4213 -5.6382 -0.8433 39 1 11.2778 -6.0027 0.0469 40 1 13.6188 -6.7610 0.0271 41 1 9.9569 -10.0491 -0.3191 42 1 14.1011 -10.8085 -1.8199 43 1 14.6335 -11.5590 -0.2815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426427966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:27 Heat of formation + Delta-G solvation = -145.904941 kcal Electronic energy + Delta-G solvation = -27473.456572 eV Core-core repulsion = 23099.812689 eV Total energy + Delta-G solvation = -4373.643882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.61782 -40.38803 -39.46256 -37.96265 -36.76055 -36.58707 -34.48037 -33.94669 -32.35367 -31.56647 -30.68600 -29.57120 -27.96679 -26.24906 -25.94507 -23.60960 -23.02176 -22.19215 -21.89089 -20.32232 -19.20943 -18.41020 -18.30677 -18.01706 -17.42498 -17.03179 -16.96152 -16.33777 -16.10621 -15.58487 -15.45079 -15.18193 -14.93557 -14.62354 -14.43488 -14.34237 -14.01827 -13.74868 -13.51826 -13.39571 -13.25803 -13.19643 -13.05391 -12.88058 -12.34637 -12.04968 -11.93900 -11.70554 -11.20192 -10.99467 -10.78388 -10.76438 -10.55361 -9.97191 -9.66563 -9.46097 -9.27699 -8.96405 -8.75649 -8.27607 -8.04156 -6.20408 -4.22402 0.61543 0.74714 2.03520 2.57666 2.99963 3.07292 3.27109 3.30913 3.36629 3.42949 3.73751 3.97914 3.99051 4.17364 4.21670 4.34229 4.35351 4.39085 4.45370 4.50302 4.56807 4.73254 4.78024 4.98957 4.99352 5.02349 5.15124 5.25345 5.49536 5.54097 5.59270 5.65317 5.72557 5.73189 6.52452 6.63416 6.72409 6.85442 7.10753 7.22199 7.24757 7.38941 7.54747 8.27854 8.67548 8.80888 9.16366 9.40568 10.91556 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.043796 B = 0.001485 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.171317 B =18854.431053 C =19352.050120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.721 5.721 11 C 0.695 3.305 12 O -0.606 6.606 13 N -0.749 5.749 14 C 0.115 3.885 15 C 0.100 3.900 16 H 0.118 0.882 17 O -0.547 6.547 18 C 0.029 3.971 19 O -0.296 6.296 20 C 0.148 3.852 21 C -0.201 4.201 22 C -0.057 4.057 23 C -0.011 4.011 24 C 0.074 3.926 25 C -0.135 4.135 26 O -0.306 6.306 27 C 0.214 3.786 28 O -0.309 6.309 29 H 0.267 0.733 30 H 0.023 0.977 31 H 0.019 0.981 32 H 0.394 0.606 33 H 0.400 0.600 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.378 0.622 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.085 0.915 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.932 -21.465 -0.932 35.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.373 5.373 11 C 0.395 3.605 12 O -0.486 6.486 13 N -0.408 5.408 14 C -0.011 4.011 15 C 0.040 3.960 16 H 0.136 0.864 17 O -0.352 6.352 18 C -0.047 4.047 19 O -0.209 6.209 20 C 0.101 3.899 21 C -0.220 4.220 22 C -0.076 4.076 23 C -0.055 4.055 24 C 0.029 3.971 25 C -0.154 4.154 26 O -0.222 6.222 27 C 0.102 3.898 28 O -0.226 6.226 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.227 0.773 33 H 0.234 0.766 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.226 0.774 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.163 0.837 42 H 0.102 0.898 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 28.073 -21.044 -1.293 35.109 hybrid contribution 0.437 0.524 0.271 0.734 sum 28.510 -20.520 -1.022 35.141 Atomic orbital electron populations 1.69881 1.06215 1.27405 1.49502 1.24781 0.94777 0.99143 0.93896 0.86811 0.80582 0.83216 0.79030 1.19874 1.20931 1.18473 1.21099 0.88557 0.95228 1.53229 0.90256 1.19367 0.94855 0.77571 0.96637 1.45390 1.03660 1.11137 1.77074 1.16085 0.83653 0.82489 0.78265 1.90864 1.55425 1.43230 1.59060 1.44872 1.06690 1.06978 1.82233 1.21542 0.82806 0.93487 1.03305 1.22157 0.90187 0.92591 0.91049 0.86433 1.86660 1.65633 1.67296 1.15592 1.23568 0.98264 0.79958 1.02921 1.86140 1.21921 1.25089 1.87723 1.18352 0.83666 0.92010 0.95825 1.21055 0.91429 1.00185 1.09341 1.19821 0.96815 0.91155 0.99762 1.19664 0.83510 0.93866 1.08430 1.19296 0.93594 0.83010 1.01216 1.18986 0.93376 0.93908 1.09157 1.87378 1.24763 1.24384 1.85686 1.25643 0.80357 0.84414 0.99382 1.87380 1.27512 1.25913 1.81798 0.92273 0.95904 0.96353 0.77313 0.76602 0.91255 0.90615 0.77391 0.90793 0.90196 0.83779 0.84269 0.83677 0.89754 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.54 -14.90 9.83 -34.44 -0.34 -15.24 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.24 5.88 4.50 -5.20 -0.02 5.86 16 10 N -0.72 -14.61 5.55 -66.41 -0.37 -14.98 16 11 C 0.70 13.21 8.57 -86.91 -0.74 12.46 16 12 O -0.61 -13.82 16.34 5.29 0.09 -13.73 16 13 N -0.75 -9.93 5.45 -65.22 -0.36 -10.29 16 14 C 0.11 1.14 5.34 -4.04 -0.02 1.12 16 15 C 0.10 0.76 3.34 -26.73 -0.09 0.67 16 16 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 17 O -0.55 -4.73 13.05 -40.11 -0.52 -5.25 16 18 C 0.03 0.18 4.37 37.16 0.16 0.34 16 19 O -0.30 -2.53 10.10 -24.54 -0.25 -2.78 16 20 C 0.15 1.23 6.68 -39.26 -0.26 0.97 16 21 C -0.20 -1.39 9.03 -39.42 -0.36 -1.75 16 22 C -0.06 -0.42 10.05 -39.48 -0.40 -0.81 16 23 C -0.01 -0.10 7.15 -39.10 -0.28 -0.37 16 24 C 0.07 0.68 7.15 -39.10 -0.28 0.40 16 25 C -0.14 -1.19 10.00 -39.32 -0.39 -1.59 16 26 O -0.31 -2.66 11.40 -45.72 -0.52 -3.18 16 27 C 0.21 1.19 8.89 101.05 0.90 2.09 16 28 O -0.31 -2.62 11.41 -46.03 -0.53 -3.15 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 30 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 31 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 32 H 0.39 7.04 8.34 -40.82 -0.34 6.70 16 33 H 0.40 4.54 8.36 -40.82 -0.34 4.20 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.38 2.19 9.05 45.56 0.41 2.60 16 37 H 0.07 0.35 7.66 -51.93 -0.40 -0.05 16 38 H 0.08 0.39 7.66 -51.93 -0.40 -0.01 16 39 H 0.14 0.68 6.28 -52.49 -0.33 0.35 16 40 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -36.31 370.94 -7.68 -43.99 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -4.70 Total: 6.50 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -2.22 Total: 6.25 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.05 Total: -50.97 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -1.73 Total: -28.09 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.31 -7.68 -43.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426427966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.916 kcal (2) G-P(sol) polarization free energy of solvation -36.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds