Wall clock time and date at job start Tue Mar 31 2020 20:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00364 * 2 1 4 4 H 1.48501 * 109.47168 * 270.00321 * 3 2 1 5 5 H 1.48504 * 109.46992 * 30.00276 * 3 2 1 6 6 H 1.48500 * 109.47173 * 150.00253 * 3 2 1 7 7 C 1.37883 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99303 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00085 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47083 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99945 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00126 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99688 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99799 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47271 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.46827 * 59.99904 * 15 14 13 17 17 O 1.42901 * 109.47113 * 300.00050 * 15 14 13 18 18 C 1.53005 * 109.47055 * 180.02562 * 15 14 13 19 19 O 1.42904 * 109.46591 * 184.99969 * 18 15 14 20 20 C 1.35974 * 116.99372 * 179.97438 * 19 18 15 21 21 C 1.38700 * 119.99014 * 359.97438 * 20 19 18 22 22 C 1.38215 * 120.08204 * 179.80612 * 21 20 19 23 23 C 1.38536 * 120.10111 * 0.42214 * 22 21 20 24 24 C 1.39249 * 119.91732 * 359.57658 * 23 22 21 25 25 C 1.38534 * 119.88170 * 0.21069 * 24 23 22 26 26 O 1.36508 * 108.64735 * 180.25048 * 24 23 22 27 27 C 1.43979 * 105.49623 * 342.69903 * 26 24 23 28 28 O 1.36605 * 131.46210 * 179.87975 * 23 22 21 29 29 H 0.97006 * 119.99925 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47109 * 59.99955 * 9 7 2 31 31 H 1.09000 * 109.47631 * 300.00243 * 9 7 2 32 32 H 0.96998 * 119.99857 * 0.02562 * 10 9 7 33 33 H 0.96998 * 120.00114 * 359.97438 * 13 11 10 34 34 H 1.09004 * 109.47330 * 59.99492 * 14 13 11 35 35 H 1.09005 * 109.47570 * 300.00027 * 14 13 11 36 36 H 0.96705 * 114.00146 * 299.99971 * 17 15 14 37 37 H 1.08991 * 109.46957 * 64.99981 * 18 15 14 38 38 H 1.08997 * 109.46978 * 304.99818 * 18 15 14 39 39 H 1.07996 * 119.95522 * 0.02562 * 21 20 19 40 40 H 1.08003 * 119.95314 * 180.30840 * 22 21 20 41 41 H 1.08001 * 120.00455 * 180.02562 * 25 24 23 42 42 H 1.09002 * 110.57307 * 268.58048 * 27 26 24 43 43 H 1.09001 * 110.56895 * 145.71437 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0009 12 8 6.1150 -1.8975 -0.0005 13 7 5.7740 -4.0924 -0.0013 14 6 7.2143 -4.3601 -0.0018 15 6 7.4521 -5.8716 -0.0016 16 1 7.0007 -6.3105 -0.8913 17 8 6.8612 -6.4466 1.1655 18 6 8.9564 -6.1512 -0.0015 19 8 9.1794 -7.5578 -0.1187 20 6 10.4723 -7.9786 -0.1346 21 6 11.5030 -7.0553 -0.0399 22 6 12.8179 -7.4812 -0.0518 23 6 13.1101 -8.8305 -0.1673 24 6 12.0770 -9.7592 -0.2625 25 6 10.7597 -9.3304 -0.2458 26 8 12.6200 -11.0078 -0.3601 27 6 13.9947 -10.8011 -0.7351 28 8 14.3014 -9.4979 -0.2056 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8745 -0.6801 -0.8911 32 1 3.3694 -3.3126 -0.0010 33 1 5.1437 -4.8296 -0.0013 34 1 7.6658 -3.9215 0.8881 35 1 7.6653 -3.9212 -0.8919 36 1 7.2157 -6.1018 1.9965 37 1 9.3929 -5.7904 0.9298 38 1 9.4213 -5.6382 -0.8433 39 1 11.2778 -6.0027 0.0469 40 1 13.6188 -6.7610 0.0271 41 1 9.9569 -10.0491 -0.3191 42 1 14.1011 -10.8085 -1.8199 43 1 14.6335 -11.5590 -0.2815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426427966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:26 Heat of formation + Delta-G solvation = -176.699583 kcal Electronic energy + Delta-G solvation = -27474.791928 eV Core-core repulsion = 23099.812689 eV Total energy + Delta-G solvation = -4374.979238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.15825 -41.10191 -40.72842 -38.72842 -37.33616 -37.19298 -36.17268 -35.21642 -34.34729 -32.21865 -31.40922 -30.28121 -29.61418 -26.89185 -26.69982 -24.35629 -23.96710 -23.44703 -22.71578 -21.84082 -19.90274 -19.78902 -18.93223 -18.58185 -18.34980 -18.00190 -17.71477 -17.59428 -16.89321 -16.67867 -16.51810 -16.24953 -15.75278 -15.67152 -15.49829 -15.14081 -15.03745 -14.90726 -14.53664 -14.42060 -14.24852 -14.05937 -13.93998 -13.79276 -13.67442 -13.34566 -13.00462 -12.66763 -12.41685 -12.28829 -11.90247 -11.79356 -11.63452 -11.37194 -11.26894 -11.12015 -10.89454 -10.30288 -9.86178 -9.63468 -8.84595 -8.37393 -6.44393 0.04072 0.16085 1.35987 1.37563 1.45964 1.51017 1.81961 2.21969 2.23105 2.31214 2.50164 2.62839 2.98394 3.38260 3.42790 3.51470 3.71975 3.73348 3.81153 3.89794 3.94498 4.02509 4.12598 4.27132 4.34123 4.35481 4.50656 4.65610 4.70104 4.80607 4.97779 5.00519 5.04371 5.08650 5.15853 5.20983 5.27815 5.50025 5.58241 5.98082 5.98996 6.29726 6.30813 6.58140 6.76057 7.16361 7.27723 7.68278 8.77387 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.043796 B = 0.001485 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.171317 B =18854.431053 C =19352.050120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.252 3.748 10 N -0.723 5.723 11 C 0.695 3.305 12 O -0.643 6.643 13 N -0.729 5.729 14 C 0.112 3.888 15 C 0.114 3.886 16 H 0.116 0.884 17 O -0.563 6.563 18 C 0.027 3.973 19 O -0.311 6.311 20 C 0.141 3.859 21 C -0.194 4.194 22 C -0.058 4.058 23 C -0.026 4.026 24 C 0.057 3.943 25 C -0.151 4.151 26 O -0.325 6.325 27 C 0.205 3.795 28 O -0.324 6.324 29 H 0.272 0.728 30 H 0.011 0.989 31 H 0.010 0.990 32 H 0.404 0.596 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.390 0.610 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.170 0.830 40 H 0.160 0.840 41 H 0.143 0.857 42 H 0.104 0.896 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.891 -21.238 -0.963 36.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.763 3.237 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.076 0.924 9 C 0.127 3.873 10 N -0.376 5.376 11 C 0.395 3.605 12 O -0.526 6.526 13 N -0.387 5.387 14 C -0.013 4.013 15 C 0.054 3.946 16 H 0.134 0.866 17 O -0.371 6.371 18 C -0.049 4.049 19 O -0.225 6.225 20 C 0.095 3.905 21 C -0.212 4.212 22 C -0.077 4.077 23 C -0.070 4.070 24 C 0.013 3.987 25 C -0.170 4.170 26 O -0.241 6.241 27 C 0.095 3.905 28 O -0.241 6.241 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.239 0.761 33 H 0.247 0.753 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.240 0.760 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.188 0.812 40 H 0.178 0.822 41 H 0.161 0.839 42 H 0.121 0.879 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 30.051 -20.892 -1.320 36.624 hybrid contribution -0.158 0.322 0.281 0.456 sum 29.894 -20.570 -1.039 36.302 Atomic orbital electron populations 1.69987 1.07754 1.28602 1.50769 1.25601 0.95529 1.02721 0.93557 0.85829 0.79270 0.79147 0.79456 1.18980 1.19908 1.18292 1.21300 0.90047 0.94549 1.52609 0.92430 1.18944 0.92906 0.79848 0.95584 1.45122 1.04785 1.09894 1.77831 1.16172 0.82647 0.83775 0.77902 1.90836 1.56089 1.44948 1.60737 1.44732 1.08588 1.05151 1.80204 1.21767 0.80411 0.95340 1.03753 1.21969 0.91321 0.90553 0.90774 0.86621 1.86638 1.66275 1.67626 1.16514 1.23646 0.97211 0.79192 1.04805 1.86099 1.22135 1.26335 1.87887 1.18435 0.83957 0.92031 0.96109 1.21331 0.90796 1.01150 1.07972 1.20160 0.97666 0.91004 0.98864 1.19961 0.83561 0.94549 1.08969 1.19472 0.93938 0.83425 1.01910 1.19121 0.93414 0.94548 1.09907 1.87336 1.26211 1.24557 1.85997 1.26110 0.79468 0.84111 1.00847 1.87340 1.27627 1.26968 1.82214 0.91877 0.97070 0.97161 0.76065 0.75269 0.90727 0.90272 0.75983 0.88838 0.88375 0.81235 0.82214 0.83890 0.87884 0.82197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 13.96 21.45 0.30 -55.33 16 2 C 0.03 1.47 5.47 84.66 0.46 1.94 16 3 Si 0.94 43.79 27.47 68.60 1.88 45.68 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -11.92 6.54 99.48 0.65 -11.27 16 7 C -0.55 -30.20 9.83 25.60 0.25 -29.95 16 8 H 0.06 3.35 7.84 -2.91 -0.02 3.32 16 9 C 0.25 12.32 4.50 85.63 0.38 12.71 16 10 N -0.72 -28.84 5.55 -482.29 -2.68 -31.52 16 11 C 0.70 25.52 8.57 179.05 1.53 27.06 16 12 O -0.64 -28.59 16.34 -3.99 -0.07 -28.66 16 13 N -0.73 -17.94 5.45 -478.52 -2.61 -20.55 16 14 C 0.11 1.96 5.34 86.38 0.46 2.42 16 15 C 0.11 1.44 3.34 30.60 0.10 1.54 16 16 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 17 O -0.56 -8.54 13.05 -144.31 -1.88 -10.42 16 18 C 0.03 0.26 4.37 71.98 0.31 0.57 16 19 O -0.31 -4.77 10.10 -88.59 -0.90 -5.66 16 20 C 0.14 2.16 6.68 22.48 0.15 2.31 16 21 C -0.19 -2.24 9.03 22.37 0.20 -2.03 16 22 C -0.06 -0.75 10.05 22.34 0.22 -0.53 16 23 C -0.03 -0.45 7.15 22.58 0.16 -0.29 16 24 C 0.06 1.06 7.15 22.58 0.16 1.22 16 25 C -0.15 -2.66 10.00 22.44 0.22 -2.43 16 26 O -0.32 -5.63 11.40 -76.14 -0.87 -6.50 16 27 C 0.21 2.12 8.89 113.37 1.01 3.12 16 28 O -0.32 -5.25 11.41 -77.28 -0.88 -6.13 16 29 H 0.27 15.12 8.31 -92.70 -0.77 14.34 16 30 H 0.01 0.58 7.20 -2.38 -0.02 0.57 16 31 H 0.01 0.53 7.57 -2.39 -0.02 0.51 16 32 H 0.40 14.23 8.34 -92.71 -0.77 13.46 16 33 H 0.41 8.51 8.36 -92.71 -0.78 7.74 16 34 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.39 3.62 9.05 -74.05 -0.67 2.95 16 37 H 0.09 0.55 7.66 -2.39 -0.02 0.53 16 38 H 0.10 0.60 7.66 -2.39 -0.02 0.58 16 39 H 0.17 0.98 6.28 -2.91 -0.02 0.96 16 40 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -78.30 370.94 -3.23 -81.53 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -1.18 Total: 19.91 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 5.64 Total: 17.66 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -4.99 Total: -107.40 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -4.59 Total: -57.38 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.68 kcal Total: -78.30 -3.23 -81.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426427966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.168 kcal (2) G-P(sol) polarization free energy of solvation -78.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds