Wall clock time and date at job start Tue Mar 31 2020 20:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42895 * 112.94629 * 48.42918 * 9 7 2 11 11 C 1.53942 * 113.73113 * 276.71995 * 9 7 2 12 12 N 1.47958 * 86.18241 * 221.92438 * 11 9 7 13 13 C 1.46895 * 110.99863 * 137.58381 * 12 11 9 14 14 C 1.53004 * 109.47211 * 70.64272 * 13 12 11 15 15 H 1.08999 * 109.46980 * 305.00034 * 14 13 12 16 16 O 1.42895 * 109.47108 * 64.99546 * 14 13 12 17 17 C 1.52999 * 109.47166 * 185.00228 * 14 13 12 18 18 O 1.42903 * 109.47139 * 174.99886 * 17 14 13 19 19 C 1.35898 * 117.00048 * 179.97438 * 18 17 14 20 20 C 1.38753 * 120.05487 * 359.71996 * 19 18 17 21 21 C 1.38121 * 119.94076 * 179.79264 * 20 19 18 22 22 C 1.38289 * 120.05935 * 0.48627 * 21 20 19 23 23 C 1.38240 * 120.10917 * 359.74761 * 22 21 20 24 24 N 1.48009 * 119.97432 * 179.97438 * 23 22 21 25 25 O 1.21797 * 119.99941 * 180.02562 * 24 23 22 26 26 O 1.21797 * 119.99885 * 0.02562 * 24 23 22 27 27 C 1.38177 * 120.05837 * 0.02562 * 23 22 21 28 28 C 1.47961 * 90.76178 * 24.68871 * 12 11 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.96697 * 114.00066 * 309.67107 * 10 9 7 31 31 H 1.08993 * 113.75791 * 336.24977 * 11 9 7 32 32 H 1.09005 * 113.75626 * 107.60779 * 11 9 7 33 33 H 1.09005 * 109.47184 * 190.63870 * 13 12 11 34 34 H 1.08999 * 109.47715 * 310.64276 * 13 12 11 35 35 H 0.96705 * 113.99950 * 60.00745 * 16 14 13 36 36 H 1.08999 * 109.46665 * 294.99321 * 17 14 13 37 37 H 1.08991 * 109.47399 * 54.99568 * 17 14 13 38 38 H 1.07999 * 120.02933 * 0.02562 * 20 19 18 39 39 H 1.07999 * 119.97068 * 180.23572 * 21 20 19 40 40 H 1.07999 * 119.94651 * 179.76773 * 22 21 20 41 41 H 1.07995 * 120.02923 * 180.02562 * 27 23 22 42 42 H 1.08996 * 113.76309 * 220.98440 * 28 12 11 43 43 H 1.09008 * 113.85816 * 89.63955 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0682 -0.3216 0.9853 11 6 4.1316 -1.0282 -1.3992 12 7 5.0974 -2.0703 -0.9863 13 6 5.3281 -3.0336 -2.0711 14 6 6.1277 -2.3610 -3.1889 15 1 5.6108 -1.4576 -3.5124 16 8 7.4277 -2.0183 -2.7046 17 6 6.2610 -3.3234 -4.3708 18 8 6.9056 -2.6565 -5.4578 19 6 7.1031 -3.3763 -6.5934 20 6 6.6903 -4.6994 -6.6581 21 6 6.8883 -5.4276 -7.8150 22 6 7.5065 -4.8422 -8.9047 23 6 7.9231 -3.5256 -8.8410 24 7 8.5850 -2.9021 -10.0089 25 8 8.9526 -1.7423 -9.9532 26 8 8.7620 -3.5489 -11.0257 27 6 7.7231 -2.7913 -7.6877 28 6 4.1311 -2.6032 -0.0006 29 1 -0.4850 0.8401 0.0004 30 1 3.7022 0.5733 0.9700 31 1 3.4728 -1.3367 -2.2108 32 1 4.5846 -0.0508 -1.5657 33 1 5.8876 -3.8865 -1.6868 34 1 4.3704 -3.3746 -2.4642 35 1 7.9459 -2.7755 -2.3990 36 1 6.8547 -4.1869 -4.0709 37 1 5.2707 -3.6543 -4.6834 38 1 6.2111 -5.1584 -5.8060 39 1 6.5637 -6.4564 -7.8671 40 1 7.6639 -5.4144 -9.8070 41 1 8.0484 -1.7627 -7.6387 42 1 4.5837 -2.8845 0.9502 43 1 3.4714 -3.3728 -0.4015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429676496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:48 Heat of formation + Delta-G solvation = -53.307413 kcal Electronic energy + Delta-G solvation = -28539.838674 eV Core-core repulsion = 24170.210122 eV Total energy + Delta-G solvation = -4369.628552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.53224 -40.88048 -39.68794 -38.41560 -36.96160 -36.86121 -34.80829 -32.50825 -32.47672 -31.74729 -30.67231 -28.37884 -27.06074 -25.96736 -25.55560 -23.60611 -23.36310 -22.16988 -21.29392 -19.98132 -19.21347 -19.01186 -17.87424 -17.66806 -17.50785 -17.13925 -16.98102 -16.72755 -16.26521 -15.88997 -15.36766 -15.27000 -14.75158 -14.42526 -14.17858 -13.85890 -13.47546 -13.35458 -12.93089 -12.87219 -12.81375 -12.45062 -12.20470 -12.07804 -11.87705 -11.70434 -11.53279 -11.45656 -11.44273 -11.12549 -11.02898 -10.67289 -10.54678 -10.18415 -10.10729 -10.04952 -9.38177 -9.10739 -8.97104 -8.69525 -8.14427 -6.40744 -4.45733 -0.61007 0.47038 0.93539 0.95048 2.44541 2.75724 3.02721 3.09708 3.17922 3.85774 4.02957 4.06725 4.09296 4.16665 4.24398 4.27888 4.43492 4.51197 4.62240 4.74099 4.83431 4.89199 4.95674 5.11166 5.19649 5.33759 5.35820 5.42128 5.50510 5.54817 5.64270 5.75492 5.86206 6.01526 6.06070 6.33720 6.51281 6.63352 6.76461 6.78006 7.25207 7.28664 7.51595 7.62268 8.06223 8.60100 8.60681 9.18619 10.71603 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018900 B = 0.002084 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.157105 B =13433.827677 C =13793.097514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.078 3.922 3 Si 0.860 3.140 4 H -0.267 1.267 5 H -0.253 1.253 6 H -0.286 1.286 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.203 3.797 10 O -0.550 6.550 11 C -0.033 4.033 12 N -0.464 5.464 13 C -0.009 4.009 14 C 0.117 3.883 15 H 0.111 0.889 16 O -0.536 6.536 17 C 0.024 3.976 18 O -0.291 6.291 19 C 0.142 3.858 20 C -0.162 4.162 21 C -0.074 4.074 22 C -0.099 4.099 23 C -0.005 4.005 24 N 0.027 4.973 25 O -0.153 6.153 26 O -0.156 6.156 27 C -0.094 4.094 28 C 0.022 3.978 29 H 0.270 0.730 30 H 0.348 0.652 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.369 0.631 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.082 0.918 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.345 -12.338 -14.353 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.127 4.127 3 Si 0.688 3.312 4 H -0.194 1.194 5 H -0.178 1.178 6 H -0.212 1.212 7 C -0.577 4.577 8 H 0.103 0.897 9 C 0.162 3.838 10 O -0.361 6.361 11 C -0.162 4.162 12 N -0.187 5.187 13 C -0.139 4.139 14 C 0.057 3.943 15 H 0.129 0.871 16 O -0.340 6.340 17 C -0.052 4.052 18 O -0.203 6.203 19 C 0.094 3.906 20 C -0.181 4.181 21 C -0.093 4.093 22 C -0.118 4.118 23 C -0.088 4.088 24 N 0.548 4.452 25 O -0.370 6.370 26 O -0.372 6.372 27 C -0.113 4.113 28 C -0.106 4.106 29 H 0.080 0.920 30 H 0.200 0.800 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.216 0.784 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.172 0.828 41 H 0.180 0.820 42 H 0.101 0.899 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.697 -12.075 -13.545 22.735 hybrid contribution -0.646 0.390 -0.687 1.021 sum 13.051 -11.685 -14.232 22.570 Atomic orbital electron populations 1.69871 1.06136 1.27562 1.48158 1.25018 0.94911 0.99179 0.93579 0.87307 0.80581 0.84081 0.79210 1.19351 1.17798 1.21235 1.21369 0.88438 0.95315 1.52539 0.89699 1.20413 0.92047 0.87394 0.83949 1.86465 1.67454 1.24021 1.58157 1.25077 0.93323 0.96301 1.01506 1.68621 1.34250 1.07567 1.08267 1.23224 0.99604 0.97014 0.94037 1.21885 0.85399 0.98186 0.88824 0.87117 1.86711 1.26365 1.36908 1.84001 1.23887 0.97645 0.97001 0.86647 1.86236 1.74582 1.39291 1.20205 1.18661 0.94641 0.90158 0.87117 1.21808 1.02164 0.93565 1.00538 1.21001 0.96538 1.00720 0.91034 1.20974 0.97580 0.92146 1.01104 1.20724 1.05741 0.94845 0.87442 1.43552 0.98845 1.00842 1.01967 1.94578 1.52378 1.00910 1.89127 1.94539 1.59543 1.63233 1.19912 1.20115 0.99516 1.02377 0.89314 1.24053 0.92599 0.97409 0.96547 0.92028 0.79969 0.90985 0.90568 0.90565 0.93081 0.78418 0.91059 0.90420 0.83432 0.83114 0.82785 0.82005 0.89939 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.10 13.96 55.43 0.77 -24.33 16 2 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.86 19.64 24.34 -169.99 -4.14 15.50 16 4 H -0.27 -5.94 7.06 56.52 0.40 -5.55 16 5 H -0.25 -5.52 5.27 56.52 0.30 -5.23 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -14.14 9.20 -34.44 -0.32 -14.46 16 8 H 0.09 2.38 8.06 -52.49 -0.42 1.95 16 9 C 0.20 4.65 1.05 -90.84 -0.10 4.55 16 10 O -0.55 -13.30 13.32 -35.23 -0.47 -13.77 16 11 C -0.03 -0.66 5.62 -2.76 -0.02 -0.68 16 12 N -0.46 -8.24 6.21 -238.22 -1.48 -9.72 16 13 C -0.01 -0.12 4.45 -3.82 -0.02 -0.13 16 14 C 0.12 1.38 3.29 -26.73 -0.09 1.29 16 15 H 0.11 1.54 7.41 -51.93 -0.38 1.15 16 16 O -0.54 -6.96 13.25 -40.08 -0.53 -7.49 16 17 C 0.02 0.20 4.37 37.16 0.16 0.36 16 18 O -0.29 -2.99 10.10 -24.27 -0.25 -3.24 16 19 C 0.14 1.24 6.69 -39.22 -0.26 0.98 16 20 C -0.16 -1.00 9.04 -39.43 -0.36 -1.36 16 21 C -0.07 -0.38 10.04 -39.61 -0.40 -0.78 16 22 C -0.10 -0.68 9.55 -39.56 -0.38 -1.06 16 23 C 0.00 -0.05 6.85 -79.97 -0.55 -0.59 16 24 N 0.03 0.32 4.45 33.95 0.15 0.47 16 25 O -0.15 -1.94 18.45 -29.46 -0.54 -2.49 16 26 O -0.16 -1.84 18.44 -29.46 -0.54 -2.38 16 27 C -0.09 -0.89 9.50 -39.43 -0.37 -1.26 16 28 C 0.02 0.42 7.36 -2.77 -0.02 0.40 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.35 8.13 3.32 45.56 0.15 8.28 16 31 H 0.07 1.39 7.73 -51.93 -0.40 0.99 16 32 H 0.08 1.60 6.97 -51.93 -0.36 1.24 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.62 7.69 -51.93 -0.40 0.22 16 35 H 0.37 3.28 9.05 45.56 0.41 3.69 16 36 H 0.07 0.42 7.65 -51.93 -0.40 0.02 16 37 H 0.08 0.53 7.67 -51.93 -0.40 0.13 16 38 H 0.15 0.60 6.30 -52.49 -0.33 0.27 16 39 H 0.15 0.32 8.06 -52.49 -0.42 -0.11 16 40 H 0.15 0.83 7.61 -52.49 -0.40 0.43 16 41 H 0.16 1.55 7.61 -52.49 -0.40 1.15 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.07 1.30 7.75 -51.92 -0.40 0.90 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -32.37 361.93 -8.62 -40.99 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -4.24 Total: 11.75 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.80 Total: -10.74 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: -0.55 Total: -33.59 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -2.33 Total: -29.37 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.14 Total: 15.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.37 -8.62 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429676496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.320 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds