Wall clock time and date at job start Tue Mar 31 2020 20:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42895 * 112.94629 * 48.42918 * 9 7 2 11 11 C 1.53942 * 113.73113 * 276.71995 * 9 7 2 12 12 N 1.47958 * 86.18241 * 221.92438 * 11 9 7 13 13 C 1.46895 * 110.99863 * 137.58381 * 12 11 9 14 14 C 1.53004 * 109.47211 * 70.64272 * 13 12 11 15 15 H 1.08999 * 109.46980 * 305.00034 * 14 13 12 16 16 O 1.42895 * 109.47108 * 64.99546 * 14 13 12 17 17 C 1.52999 * 109.47166 * 185.00228 * 14 13 12 18 18 O 1.42903 * 109.47139 * 174.99886 * 17 14 13 19 19 C 1.35898 * 117.00048 * 179.97438 * 18 17 14 20 20 C 1.38753 * 120.05487 * 359.71996 * 19 18 17 21 21 C 1.38121 * 119.94076 * 179.79264 * 20 19 18 22 22 C 1.38289 * 120.05935 * 0.48627 * 21 20 19 23 23 C 1.38240 * 120.10917 * 359.74761 * 22 21 20 24 24 N 1.48009 * 119.97432 * 179.97438 * 23 22 21 25 25 O 1.21797 * 119.99941 * 180.02562 * 24 23 22 26 26 O 1.21797 * 119.99885 * 0.02562 * 24 23 22 27 27 C 1.38177 * 120.05837 * 0.02562 * 23 22 21 28 28 C 1.47961 * 90.76178 * 24.68871 * 12 11 9 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.96697 * 114.00066 * 309.67107 * 10 9 7 31 31 H 1.08993 * 113.75791 * 336.24977 * 11 9 7 32 32 H 1.09005 * 113.75626 * 107.60779 * 11 9 7 33 33 H 1.09005 * 109.47184 * 190.63870 * 13 12 11 34 34 H 1.08999 * 109.47715 * 310.64276 * 13 12 11 35 35 H 0.96705 * 113.99950 * 60.00745 * 16 14 13 36 36 H 1.08999 * 109.46665 * 294.99321 * 17 14 13 37 37 H 1.08991 * 109.47399 * 54.99568 * 17 14 13 38 38 H 1.07999 * 120.02933 * 0.02562 * 20 19 18 39 39 H 1.07999 * 119.97068 * 180.23572 * 21 20 19 40 40 H 1.07999 * 119.94651 * 179.76773 * 22 21 20 41 41 H 1.07995 * 120.02923 * 180.02562 * 27 23 22 42 42 H 1.08996 * 113.76309 * 220.98440 * 28 12 11 43 43 H 1.09008 * 113.85816 * 89.63955 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0682 -0.3216 0.9853 11 6 4.1316 -1.0282 -1.3992 12 7 5.0974 -2.0703 -0.9863 13 6 5.3281 -3.0336 -2.0711 14 6 6.1277 -2.3610 -3.1889 15 1 5.6108 -1.4576 -3.5124 16 8 7.4277 -2.0183 -2.7046 17 6 6.2610 -3.3234 -4.3708 18 8 6.9056 -2.6565 -5.4578 19 6 7.1031 -3.3763 -6.5934 20 6 6.6903 -4.6994 -6.6581 21 6 6.8883 -5.4276 -7.8150 22 6 7.5065 -4.8422 -8.9047 23 6 7.9231 -3.5256 -8.8410 24 7 8.5850 -2.9021 -10.0089 25 8 8.9526 -1.7423 -9.9532 26 8 8.7620 -3.5489 -11.0257 27 6 7.7231 -2.7913 -7.6877 28 6 4.1311 -2.6032 -0.0006 29 1 -0.4850 0.8401 0.0004 30 1 3.7022 0.5733 0.9700 31 1 3.4728 -1.3367 -2.2108 32 1 4.5846 -0.0508 -1.5657 33 1 5.8876 -3.8865 -1.6868 34 1 4.3704 -3.3746 -2.4642 35 1 7.9459 -2.7755 -2.3990 36 1 6.8547 -4.1869 -4.0709 37 1 5.2707 -3.6543 -4.6834 38 1 6.2111 -5.1584 -5.8060 39 1 6.5637 -6.4564 -7.8671 40 1 7.6639 -5.4144 -9.8070 41 1 8.0484 -1.7627 -7.6387 42 1 4.5837 -2.8845 0.9502 43 1 3.4714 -3.3728 -0.4015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429676496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:47 Heat of formation + Delta-G solvation = -81.063703 kcal Electronic energy + Delta-G solvation = -28541.042277 eV Core-core repulsion = 24170.210122 eV Total energy + Delta-G solvation = -4370.832155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.35046 -41.55785 -41.09478 -39.18251 -37.90149 -37.75740 -36.43335 -34.54974 -33.05560 -32.61286 -31.50658 -29.66550 -27.93444 -27.34064 -27.11404 -24.60368 -24.08223 -23.03263 -22.34079 -20.91337 -20.67633 -19.85300 -19.40055 -18.70907 -18.23213 -18.19171 -18.05791 -17.62042 -17.29532 -16.83529 -16.69872 -16.36271 -15.59031 -15.40753 -15.25635 -15.17834 -14.71993 -14.55820 -14.35527 -13.99166 -13.86558 -13.61027 -13.36508 -12.93974 -12.91036 -12.79095 -12.71346 -12.45788 -12.38834 -12.38616 -12.24904 -12.24154 -11.92161 -11.82636 -11.16720 -11.05150 -10.88900 -10.71202 -10.46334 -9.69746 -9.62309 -8.46778 -6.55579 -1.35716 -0.05920 0.20928 0.22734 1.19610 1.26212 1.34000 1.79226 2.13676 2.21550 2.77257 2.94131 3.35232 3.39196 3.46435 3.55199 3.64559 3.69909 3.75987 3.91387 3.93662 3.94239 4.03570 4.16004 4.26915 4.32050 4.38408 4.49084 4.62558 4.64873 4.78317 4.84865 4.90022 4.91863 4.93638 5.00538 5.12604 5.29943 5.32419 5.36828 6.00630 6.04906 6.19786 6.38159 6.49696 6.74984 6.87699 7.12480 8.68677 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018900 B = 0.002084 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.157105 B =13433.827677 C =13793.097514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.025 3.975 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.239 1.239 6 H -0.285 1.285 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.178 3.822 10 O -0.559 6.559 11 C -0.021 4.021 12 N -0.469 5.469 13 C -0.009 4.009 14 C 0.120 3.880 15 H 0.081 0.919 16 O -0.562 6.562 17 C 0.028 3.972 18 O -0.318 6.318 19 C 0.129 3.871 20 C -0.146 4.146 21 C -0.060 4.060 22 C -0.092 4.092 23 C -0.023 4.023 24 N 0.029 4.971 25 O -0.202 6.202 26 O -0.151 6.151 27 C -0.115 4.115 28 C 0.032 3.968 29 H 0.271 0.729 30 H 0.349 0.651 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.387 0.613 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.179 0.821 39 H 0.194 0.806 40 H 0.171 0.829 41 H 0.145 0.855 42 H 0.087 0.913 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.338 -15.150 -14.682 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.175 4.175 3 Si 0.742 3.258 4 H -0.182 1.182 5 H -0.164 1.164 6 H -0.212 1.212 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.138 3.862 10 O -0.370 6.370 11 C -0.151 4.151 12 N -0.191 5.191 13 C -0.138 4.138 14 C 0.060 3.940 15 H 0.099 0.901 16 O -0.368 6.368 17 C -0.047 4.047 18 O -0.231 6.231 19 C 0.082 3.918 20 C -0.165 4.165 21 C -0.078 4.078 22 C -0.111 4.111 23 C -0.106 4.106 24 N 0.544 4.456 25 O -0.409 6.409 26 O -0.372 6.372 27 C -0.135 4.135 28 C -0.097 4.097 29 H 0.081 0.919 30 H 0.201 0.799 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.236 0.764 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.197 0.803 39 H 0.211 0.789 40 H 0.189 0.811 41 H 0.162 0.838 42 H 0.105 0.895 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.734 -14.834 -13.853 25.081 hybrid contribution -0.995 1.057 -0.568 1.559 sum 13.739 -13.777 -14.422 24.219 Atomic orbital electron populations 1.69999 1.07794 1.28538 1.50165 1.25788 0.95588 1.02760 0.93399 0.86369 0.79802 0.79782 0.79873 1.18182 1.16354 1.21173 1.21593 0.90579 0.94136 1.51700 0.92747 1.20713 0.90226 0.89866 0.85413 1.86458 1.67372 1.24272 1.58919 1.24816 0.93662 0.97020 0.99590 1.68512 1.32651 1.08195 1.09759 1.23327 1.00845 0.96695 0.92946 1.21721 0.84604 0.97793 0.89914 0.90134 1.86669 1.27032 1.38725 1.84406 1.23844 0.99359 0.96470 0.84996 1.86178 1.75217 1.40663 1.21067 1.18739 0.95457 0.91287 0.86345 1.22211 1.00380 0.92063 1.01834 1.21507 0.94579 1.02229 0.89493 1.21379 0.96441 0.90816 1.02500 1.20876 1.07263 0.95961 0.86507 1.43908 0.98508 1.00623 1.02525 1.94575 1.54601 1.01967 1.89722 1.94492 1.59016 1.62905 1.20744 1.20079 1.00987 1.02086 0.90305 1.23987 0.92787 0.95358 0.97526 0.91927 0.79922 0.90619 0.91637 0.87302 0.91954 0.76419 0.87642 0.88494 0.80339 0.78862 0.81110 0.83759 0.89500 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 13.96 21.45 0.30 -53.75 16 2 C 0.03 1.37 5.47 84.66 0.46 1.83 16 3 Si 0.92 40.69 24.34 68.60 1.67 42.36 16 4 H -0.26 -10.85 7.06 99.48 0.70 -10.15 16 5 H -0.24 -10.01 5.27 99.48 0.52 -9.48 16 6 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.54 -28.79 9.20 25.60 0.24 -28.56 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 C 0.18 8.04 1.05 -10.89 -0.01 8.02 16 10 O -0.56 -26.48 13.32 -148.98 -1.98 -28.46 16 11 C -0.02 -0.84 5.62 86.41 0.49 -0.35 16 12 N -0.47 -15.57 6.21 -910.80 -5.66 -21.22 16 13 C -0.01 -0.20 4.45 86.31 0.38 0.18 16 14 C 0.12 2.52 3.29 30.60 0.10 2.62 16 15 H 0.08 2.18 7.41 -2.39 -0.02 2.16 16 16 O -0.56 -13.42 13.25 -144.35 -1.91 -15.34 16 17 C 0.03 0.37 4.37 71.98 0.31 0.68 16 18 O -0.32 -5.99 10.10 -87.77 -0.89 -6.88 16 19 C 0.13 2.00 6.69 22.51 0.15 2.15 16 20 C -0.15 -1.14 9.04 22.37 0.20 -0.94 16 21 C -0.06 -0.32 10.04 22.25 0.22 -0.09 16 22 C -0.09 -0.99 9.55 22.28 0.21 -0.78 16 23 C -0.02 -0.42 6.85 36.36 0.25 -0.17 16 24 N 0.03 0.68 4.45 -46.50 -0.21 0.48 16 25 O -0.20 -5.57 18.45 18.89 0.35 -5.22 16 26 O -0.15 -3.53 18.44 18.89 0.35 -3.18 16 27 C -0.11 -2.19 9.50 22.37 0.21 -1.98 16 28 C 0.03 1.15 7.36 86.41 0.64 1.79 16 29 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.35 15.86 3.32 -74.06 -0.25 15.62 16 31 H 0.08 2.85 7.73 -2.39 -0.02 2.83 16 32 H 0.07 2.69 6.97 -2.38 -0.02 2.67 16 33 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.06 1.28 7.69 -2.39 -0.02 1.26 16 35 H 0.39 5.73 9.05 -74.05 -0.67 5.06 16 36 H 0.11 0.65 7.65 -2.39 -0.02 0.63 16 37 H 0.10 0.88 7.67 -2.39 -0.02 0.86 16 38 H 0.18 0.28 6.30 -2.91 -0.02 0.26 16 39 H 0.19 -0.54 8.06 -2.91 -0.02 -0.56 16 40 H 0.17 1.25 7.61 -2.91 -0.02 1.22 16 41 H 0.14 3.11 7.61 -2.91 -0.02 3.09 16 42 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.09 2.87 7.75 -2.38 -0.02 2.85 16 Total: -1.00 -74.29 361.93 -4.15 -78.44 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.03 Total: 28.38 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 3.86 Total: -15.60 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -5.56 Total: -74.50 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -4.09 Total: -59.08 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.67 Total: 42.36 kcal Total: -74.29 -4.15 -78.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429676496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.627 kcal (2) G-P(sol) polarization free energy of solvation -74.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds