Wall clock time and date at job start Tue Mar 31 2020 20:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35765 * 116.99641 * 2 1 4 4 N 1.32147 * 120.19563 * 5.02666 * 3 2 1 5 5 N 1.28300 * 122.18969 * 180.02562 * 4 3 2 6 6 C 1.31903 * 122.45072 * 0.02562 * 5 4 3 7 7 C 1.38526 * 120.03727 * 359.71617 * 6 5 4 8 8 C 1.39361 * 117.93180 * 0.54228 * 7 6 5 9 9 N 1.39648 * 121.11262 * 179.74535 * 8 7 6 10 10 C 1.34776 * 120.00303 * 16.90871 * 9 8 7 11 11 O 1.21679 * 119.99858 * 4.84091 * 10 9 8 12 12 C 1.46847 * 120.00196 * 184.84601 * 10 9 8 13 13 C 1.36150 * 125.43587 * 173.27118 * 12 10 9 14 14 C 1.41703 * 107.74408 * 180.21837 * 13 12 10 15 15 C 1.40023 * 133.34520 * 179.81944 * 14 13 12 16 16 C 1.36578 * 119.82718 * 180.02562 * 15 14 13 17 17 C 1.38857 * 120.60055 * 359.96043 * 16 15 14 18 18 C 1.37848 * 120.63215 * 359.97438 * 17 16 15 19 19 C 1.39078 * 119.81669 * 0.02717 * 18 17 16 20 20 N 1.37842 * 133.16077 * 180.02562 * 19 18 17 21 21 C 1.36888 * 125.62079 * 359.95507 * 20 19 18 22 22 H 1.08001 * 119.99999 * 132.64113 * 21 20 19 23 23 C 1.39018 * 120.00159 * 312.63595 * 21 20 19 24 24 N 1.31349 * 119.99786 * 344.30810 * 23 21 20 25 25 Si 1.86800 * 120.00037 * 164.29852 * 23 21 20 26 26 H 1.48489 * 109.47661 * 275.03649 * 25 23 21 27 27 H 1.48504 * 109.46859 * 35.03782 * 25 23 21 28 28 H 1.48501 * 109.47032 * 155.03198 * 25 23 21 29 29 H 1.08999 * 109.46803 * 64.31837 * 1 2 3 30 30 H 1.09004 * 109.46700 * 184.31749 * 1 2 3 31 31 H 1.08998 * 109.47240 * 304.31421 * 1 2 3 32 32 H 1.07995 * 119.98171 * 179.97438 * 6 5 4 33 33 H 1.08006 * 121.03493 * 180.31261 * 7 6 5 34 34 H 0.97001 * 120.00123 * 196.91512 * 9 8 7 35 35 H 1.07994 * 126.13102 * 0.02562 * 13 12 10 36 36 H 1.07994 * 120.08792 * 0.02562 * 15 14 13 37 37 H 1.08001 * 119.70142 * 179.97438 * 16 15 14 38 38 H 1.07996 * 119.68654 * 180.02562 * 17 16 15 39 39 H 1.08004 * 120.09351 * 180.02562 * 18 17 16 40 40 H 0.96996 * 120.00040 * 351.93600 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 7 1.3332 2.3184 0.1001 5 7 1.8756 3.4811 0.1035 6 6 3.1797 3.6540 0.0072 7 6 4.0189 2.5568 -0.0970 8 6 3.4386 1.2898 -0.1075 9 7 4.2214 0.1384 -0.2152 10 6 5.5455 0.1985 0.0287 11 8 6.0442 1.2341 0.4279 12 6 6.3865 -0.9858 -0.1873 13 6 7.7450 -1.0155 -0.1024 14 6 8.1665 -2.3387 -0.3840 15 6 9.4225 -2.9545 -0.4467 16 6 9.5134 -4.2828 -0.7514 17 6 8.3702 -5.0309 -0.9995 18 6 7.1227 -4.4473 -0.9424 19 6 7.0048 -3.0962 -0.6341 20 7 5.9249 -2.2494 -0.5044 21 6 4.6122 -2.6003 -0.6701 22 1 3.8765 -2.3003 0.0614 23 6 4.2259 -3.3429 -1.7801 24 7 5.0308 -3.4471 -2.8129 25 14 2.5625 -4.1925 -1.8027 26 1 2.6723 -5.5137 -1.1338 27 1 1.5690 -3.3548 -1.0839 28 1 2.1237 -4.3842 -3.2083 29 1 -0.3633 0.4454 -0.9262 30 1 -0.3633 -1.0248 0.0774 31 1 -0.3633 0.5793 0.8488 32 1 3.5938 4.6514 0.0137 33 1 5.0893 2.6796 -0.1717 34 1 3.8122 -0.7046 -0.4657 35 1 8.3866 -0.1796 0.1340 36 1 10.3170 -2.3807 -0.2546 37 1 10.4832 -4.7556 -0.7996 38 1 8.4592 -6.0803 -1.2387 39 1 6.2393 -5.0375 -1.1365 40 1 5.8404 -2.9145 -2.8525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589119011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:29 Heat of formation + Delta-G solvation = 54.192907 kcal Electronic energy + Delta-G solvation = -28978.727997 eV Core-core repulsion = 24953.362680 eV Total energy + Delta-G solvation = -4025.365318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.44282 -40.79133 -39.13555 -38.30181 -36.32987 -35.26520 -33.88973 -32.10910 -31.02750 -30.82100 -29.17335 -28.28684 -27.54577 -25.03727 -24.85869 -23.76490 -22.77503 -21.25495 -20.50128 -19.87643 -18.98256 -18.46973 -17.69023 -17.44368 -16.43237 -16.13477 -15.87946 -15.32324 -15.03265 -14.84405 -14.57717 -14.34858 -14.17688 -14.10693 -13.76564 -13.67806 -13.36670 -13.23070 -12.71275 -12.35641 -12.06120 -12.00764 -11.64615 -11.30808 -11.29781 -11.07871 -11.04251 -10.67162 -10.57075 -10.49541 -10.30124 -10.06635 -9.57051 -9.38795 -9.19977 -9.01475 -8.24114 -7.71007 -7.26301 -6.91965 -4.96793 0.81074 1.08433 1.52338 2.43276 2.70271 2.91305 2.97627 2.99462 3.13514 3.17528 3.64530 3.68936 3.94421 4.11833 4.22531 4.43330 4.53293 4.69839 4.81228 5.07196 5.29256 5.30800 5.38314 5.55134 5.57919 5.62425 5.67471 5.75245 5.84619 6.09379 6.20828 6.23712 6.34567 6.52932 6.54092 6.69284 6.77585 7.03466 7.08605 7.19086 7.29007 7.39573 7.50853 7.59266 7.69979 7.97940 8.29926 8.47992 8.78351 8.87321 9.92654 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.004619 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.268453 B = 6060.578192 C = 8033.909723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.300 6.300 3 C 0.235 3.765 4 N -0.285 5.285 5 N -0.242 5.242 6 C 0.035 3.965 7 C -0.136 4.136 8 C 0.155 3.845 9 N -0.646 5.646 10 C 0.600 3.400 11 O -0.530 6.530 12 C -0.027 4.027 13 C -0.151 4.151 14 C -0.130 4.130 15 C -0.079 4.079 16 C -0.158 4.158 17 C -0.129 4.129 18 C -0.082 4.082 19 C 0.081 3.919 20 N -0.267 5.267 21 C -0.459 4.459 22 H 0.104 0.896 23 C 0.034 3.966 24 N -0.818 5.818 25 Si 1.074 2.926 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.175 0.825 33 H 0.186 0.814 34 H 0.437 0.563 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 2.803 2.428 4.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.204 6.204 3 C 0.046 3.954 4 N -0.141 5.141 5 N -0.086 5.086 6 C -0.131 4.131 7 C -0.166 4.166 8 C 0.045 3.955 9 N -0.298 5.298 10 C 0.393 3.607 11 O -0.408 6.408 12 C -0.141 4.141 13 C -0.179 4.179 14 C -0.134 4.134 15 C -0.097 4.097 16 C -0.177 4.177 17 C -0.149 4.149 18 C -0.102 4.102 19 C -0.034 4.034 20 N 0.068 4.932 21 C -0.585 4.585 22 H 0.121 0.879 23 C -0.183 4.183 24 N -0.444 5.444 25 Si 0.896 3.104 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.083 0.917 32 H 0.193 0.807 33 H 0.203 0.797 34 H 0.287 0.713 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.957 2.701 1.860 5.943 hybrid contribution 1.985 0.031 0.574 2.066 sum -2.972 2.732 2.434 4.714 Atomic orbital electron populations 1.22985 0.76617 1.03562 1.02613 1.86277 1.23331 1.22858 1.87910 1.21276 0.89026 0.88013 0.97129 1.72868 1.31281 0.93870 1.16058 1.72561 1.11810 1.13087 1.11190 1.24074 0.90556 1.00558 0.97914 1.22975 1.04962 0.89364 0.99346 1.18297 0.88192 0.89490 0.99549 1.44435 1.08251 1.11789 1.65308 1.17440 0.80505 0.87252 0.75526 1.90612 1.73688 1.30658 1.45796 1.19944 0.93117 0.85209 1.15811 1.20459 0.91801 0.96326 1.09355 1.18018 0.93020 0.93833 1.08575 1.20150 0.95015 0.94390 1.00188 1.20377 0.97613 0.94284 1.05393 1.20658 0.91884 0.99027 1.03369 1.20159 0.97566 0.91909 1.00571 1.18511 0.86816 0.92260 1.05775 1.40110 1.04864 1.03317 1.44938 1.20542 0.82369 1.43864 1.11764 0.87929 1.26913 1.05770 0.95349 0.90305 1.70572 1.12735 1.33618 1.27443 0.83430 0.72441 0.76932 0.77623 1.19837 1.19544 1.19709 0.92169 0.88124 0.91750 0.80745 0.79723 0.71288 0.84408 0.87206 0.87307 0.86992 0.86400 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.50 101.05 1.06 1.52 16 2 O -0.30 -4.95 9.94 -19.00 -0.19 -5.14 16 3 C 0.24 4.09 7.59 -16.77 -0.13 3.96 16 4 N -0.29 -4.82 10.31 30.63 0.32 -4.50 16 5 N -0.24 -3.89 11.49 30.53 0.35 -3.54 16 6 C 0.04 0.50 11.30 -17.41 -0.20 0.30 16 7 C -0.14 -2.18 8.98 -39.06 -0.35 -2.53 16 8 C 0.16 2.81 6.60 -83.23 -0.55 2.26 16 9 N -0.65 -12.76 5.29 -10.67 -0.06 -12.81 16 10 C 0.60 12.60 7.65 -12.78 -0.10 12.50 16 11 O -0.53 -11.01 13.71 5.21 0.07 -10.94 16 12 C -0.03 -0.60 6.76 -82.26 -0.56 -1.16 16 13 C -0.15 -3.21 10.55 -39.01 -0.41 -3.62 16 14 C -0.13 -2.77 6.16 -106.89 -0.66 -3.43 16 15 C -0.08 -1.45 10.06 -39.51 -0.40 -1.84 16 16 C -0.16 -2.72 9.97 -39.95 -0.40 -3.12 16 17 C -0.13 -2.38 10.02 -39.50 -0.40 -2.77 16 18 C -0.08 -1.77 8.82 -39.41 -0.35 -2.12 16 19 C 0.08 1.85 5.43 -83.84 -0.46 1.40 16 20 N -0.27 -6.24 2.49 -56.09 -0.14 -6.38 16 21 C -0.46 -10.53 7.50 -15.01 -0.11 -10.64 16 22 H 0.10 2.29 6.62 -52.49 -0.35 1.94 16 23 C 0.03 0.77 4.53 -17.47 -0.08 0.69 16 24 N -0.82 -20.16 12.35 55.50 0.69 -19.47 16 25 Si 1.07 19.78 29.95 -169.99 -5.09 14.69 16 26 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 27 H -0.27 -4.60 7.11 56.52 0.40 -4.19 16 28 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.74 7.93 -51.93 -0.41 0.33 16 32 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.19 3.01 5.42 -52.48 -0.28 2.73 16 34 H 0.44 8.92 4.23 -40.82 -0.17 8.75 16 35 H 0.14 2.62 8.06 -52.49 -0.42 2.20 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.12 2.62 7.19 -52.48 -0.38 2.24 16 40 H 0.29 7.57 7.14 -40.82 -0.29 7.28 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -26.98 344.35 -6.58 -33.56 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -3.64 Total: 17.97 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -4.07 Total: -8.61 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 1.16 Total: -46.72 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.12 Total: -16.08 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.09 Total: 14.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.98 -6.58 -33.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589119011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.754 kcal (2) G-P(sol) polarization free energy of solvation -26.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds