Wall clock time and date at job start Tue Mar 31 2020 20:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35765 * 116.99641 * 2 1 4 4 N 1.32147 * 120.19563 * 5.02666 * 3 2 1 5 5 N 1.28300 * 122.18969 * 180.02562 * 4 3 2 6 6 C 1.31903 * 122.45072 * 0.02562 * 5 4 3 7 7 C 1.38526 * 120.03727 * 359.71617 * 6 5 4 8 8 C 1.39361 * 117.93180 * 0.54228 * 7 6 5 9 9 N 1.39648 * 121.11262 * 179.74535 * 8 7 6 10 10 C 1.34776 * 120.00303 * 16.90871 * 9 8 7 11 11 O 1.21679 * 119.99858 * 4.84091 * 10 9 8 12 12 C 1.46847 * 120.00196 * 184.84601 * 10 9 8 13 13 C 1.36150 * 125.43587 * 173.27118 * 12 10 9 14 14 C 1.41703 * 107.74408 * 180.21837 * 13 12 10 15 15 C 1.40023 * 133.34520 * 179.81944 * 14 13 12 16 16 C 1.36578 * 119.82718 * 180.02562 * 15 14 13 17 17 C 1.38857 * 120.60055 * 359.96043 * 16 15 14 18 18 C 1.37848 * 120.63215 * 359.97438 * 17 16 15 19 19 C 1.39078 * 119.81669 * 0.02717 * 18 17 16 20 20 N 1.37842 * 133.16077 * 180.02562 * 19 18 17 21 21 C 1.36888 * 125.62079 * 359.95507 * 20 19 18 22 22 H 1.08001 * 119.99999 * 132.64113 * 21 20 19 23 23 C 1.39018 * 120.00159 * 312.63595 * 21 20 19 24 24 N 1.31349 * 119.99786 * 344.30810 * 23 21 20 25 25 Si 1.86800 * 120.00037 * 164.29852 * 23 21 20 26 26 H 1.48489 * 109.47661 * 275.03649 * 25 23 21 27 27 H 1.48504 * 109.46859 * 35.03782 * 25 23 21 28 28 H 1.48501 * 109.47032 * 155.03198 * 25 23 21 29 29 H 1.08999 * 109.46803 * 64.31837 * 1 2 3 30 30 H 1.09004 * 109.46700 * 184.31749 * 1 2 3 31 31 H 1.08998 * 109.47240 * 304.31421 * 1 2 3 32 32 H 1.07995 * 119.98171 * 179.97438 * 6 5 4 33 33 H 1.08006 * 121.03493 * 180.31261 * 7 6 5 34 34 H 0.97001 * 120.00123 * 196.91512 * 9 8 7 35 35 H 1.07994 * 126.13102 * 0.02562 * 13 12 10 36 36 H 1.07994 * 120.08792 * 0.02562 * 15 14 13 37 37 H 1.08001 * 119.70142 * 179.97438 * 16 15 14 38 38 H 1.07996 * 119.68654 * 180.02562 * 17 16 15 39 39 H 1.08004 * 120.09351 * 180.02562 * 18 17 16 40 40 H 0.96996 * 120.00040 * 351.93600 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 7 1.3332 2.3184 0.1001 5 7 1.8756 3.4811 0.1035 6 6 3.1797 3.6540 0.0072 7 6 4.0189 2.5568 -0.0970 8 6 3.4386 1.2898 -0.1075 9 7 4.2214 0.1384 -0.2152 10 6 5.5455 0.1985 0.0287 11 8 6.0442 1.2341 0.4279 12 6 6.3865 -0.9858 -0.1873 13 6 7.7450 -1.0155 -0.1024 14 6 8.1665 -2.3387 -0.3840 15 6 9.4225 -2.9545 -0.4467 16 6 9.5134 -4.2828 -0.7514 17 6 8.3702 -5.0309 -0.9995 18 6 7.1227 -4.4473 -0.9424 19 6 7.0048 -3.0962 -0.6341 20 7 5.9249 -2.2494 -0.5044 21 6 4.6122 -2.6003 -0.6701 22 1 3.8765 -2.3003 0.0614 23 6 4.2259 -3.3429 -1.7801 24 7 5.0308 -3.4471 -2.8129 25 14 2.5625 -4.1925 -1.8027 26 1 2.6723 -5.5137 -1.1338 27 1 1.5690 -3.3548 -1.0839 28 1 2.1237 -4.3842 -3.2083 29 1 -0.3633 0.4454 -0.9262 30 1 -0.3633 -1.0248 0.0774 31 1 -0.3633 0.5793 0.8488 32 1 3.5938 4.6514 0.0137 33 1 5.0893 2.6796 -0.1717 34 1 3.8122 -0.7046 -0.4657 35 1 8.3866 -0.1796 0.1340 36 1 10.3170 -2.3807 -0.2546 37 1 10.4832 -4.7556 -0.7996 38 1 8.4592 -6.0803 -1.2387 39 1 6.2393 -5.0375 -1.1365 40 1 5.8404 -2.9145 -2.8525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589119011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:28 Heat of formation + Delta-G solvation = 37.785258 kcal Electronic energy + Delta-G solvation = -28979.439486 eV Core-core repulsion = 24953.362680 eV Total energy + Delta-G solvation = -4026.076807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.86080 -42.27884 -40.64709 -39.51238 -37.86694 -36.75029 -35.55577 -33.39839 -32.52703 -32.28470 -30.72123 -29.84214 -28.61545 -26.72170 -26.28164 -25.01436 -24.21126 -22.84820 -22.02848 -21.46320 -20.56242 -19.68597 -19.14762 -18.86126 -17.81477 -17.53657 -17.42015 -16.85307 -16.47386 -16.27726 -16.03957 -15.66547 -15.54777 -15.39517 -15.21052 -15.03749 -14.89648 -14.77769 -14.27617 -13.92891 -13.61932 -13.02897 -12.91982 -12.80576 -12.52564 -12.51228 -12.33219 -12.16718 -12.15892 -11.97486 -11.77253 -11.59960 -11.04944 -10.85051 -10.62739 -10.55652 -9.63657 -9.41964 -8.90278 -8.55174 -6.73874 -0.57632 -0.18094 0.01526 0.91042 1.13120 1.46650 1.50063 1.65518 1.72481 1.74376 2.14299 2.20724 2.48505 2.52247 2.78543 2.99011 3.14348 3.27539 3.43877 3.87747 3.92941 4.04225 4.27363 4.29625 4.35576 4.35893 4.39084 4.56790 4.58152 4.64394 4.67619 4.79705 4.94147 5.00579 5.11064 5.20678 5.23342 5.35406 5.63642 5.69215 5.78891 5.85970 5.93532 5.99274 6.11891 6.38011 6.67877 6.82062 7.18712 7.51891 8.11387 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.004619 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.268453 B = 6060.578192 C = 8033.909723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.232 3.768 4 N -0.291 5.291 5 N -0.251 5.251 6 C 0.051 3.949 7 C -0.130 4.130 8 C 0.125 3.875 9 N -0.647 5.647 10 C 0.598 3.402 11 O -0.535 6.535 12 C -0.052 4.052 13 C -0.152 4.152 14 C -0.150 4.150 15 C -0.078 4.078 16 C -0.152 4.152 17 C -0.114 4.114 18 C -0.117 4.117 19 C 0.058 3.942 20 N -0.287 5.287 21 C -0.465 4.465 22 H 0.102 0.898 23 C 0.005 3.995 24 N -0.844 5.844 25 Si 1.111 2.889 26 H -0.264 1.264 27 H -0.247 1.247 28 H -0.277 1.277 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.069 0.931 32 H 0.221 0.779 33 H 0.184 0.816 34 H 0.432 0.568 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.142 0.858 39 H 0.098 0.902 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 2.981 2.881 4.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.222 6.222 3 C 0.043 3.957 4 N -0.146 5.146 5 N -0.095 5.095 6 C -0.115 4.115 7 C -0.161 4.161 8 C 0.016 3.984 9 N -0.297 5.297 10 C 0.390 3.610 11 O -0.414 6.414 12 C -0.165 4.165 13 C -0.180 4.180 14 C -0.154 4.154 15 C -0.097 4.097 16 C -0.170 4.170 17 C -0.134 4.134 18 C -0.137 4.137 19 C -0.056 4.056 20 N 0.046 4.954 21 C -0.591 4.591 22 H 0.119 0.881 23 C -0.206 4.206 24 N -0.470 5.470 25 Si 0.928 3.072 26 H -0.189 1.189 27 H -0.171 1.171 28 H -0.202 1.202 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.088 0.912 32 H 0.238 0.762 33 H 0.201 0.799 34 H 0.281 0.719 35 H 0.174 0.826 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.160 0.840 39 H 0.117 0.883 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.281 2.901 2.335 5.674 hybrid contribution 1.879 0.018 0.476 1.938 sum -2.403 2.919 2.810 4.711 Atomic orbital electron populations 1.23289 0.74590 1.05396 1.03187 1.86263 1.25456 1.22673 1.87785 1.21328 0.88828 0.88478 0.97094 1.72866 1.31447 0.93943 1.16366 1.72536 1.12832 1.12814 1.11299 1.24665 0.89413 1.01818 0.95625 1.23100 1.05177 0.89323 0.98516 1.18606 0.88737 0.89605 1.01450 1.44262 1.07918 1.12242 1.65325 1.17363 0.80930 0.86957 0.75756 1.90585 1.73915 1.30524 1.46402 1.20332 0.94085 0.85663 1.16469 1.20770 0.91709 0.96988 1.08500 1.18411 0.93964 0.93811 1.09244 1.20597 0.94880 0.95253 0.98964 1.20859 0.98979 0.93805 1.03404 1.21116 0.91078 1.00580 1.00668 1.20217 0.98414 0.91663 1.03423 1.18954 0.87405 0.93105 1.06137 1.40241 1.05086 1.03791 1.46241 1.20663 0.82759 1.44012 1.11711 0.88120 1.28129 1.07666 0.95284 0.89569 1.70688 1.12735 1.34884 1.28677 0.83023 0.69721 0.76870 0.77629 1.18935 1.17077 1.20163 0.91585 0.85702 0.91183 0.76249 0.79898 0.71899 0.82598 0.83913 0.82927 0.83985 0.88342 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.50 113.37 1.19 1.88 16 2 O -0.32 -10.46 9.94 -90.92 -0.90 -11.36 16 3 C 0.23 8.06 7.59 85.06 0.65 8.70 16 4 N -0.29 -9.57 10.31 -169.88 -1.75 -11.33 16 5 N -0.25 -7.66 11.49 -57.33 -0.66 -8.32 16 6 C 0.05 1.32 11.30 84.75 0.96 2.28 16 7 C -0.13 -4.10 8.98 22.61 0.20 -3.89 16 8 C 0.13 4.57 6.60 38.59 0.25 4.82 16 9 N -0.65 -26.36 5.29 -305.90 -1.62 -27.98 16 10 C 0.60 25.82 7.65 86.50 0.66 26.48 16 11 O -0.54 -22.51 13.71 -4.28 -0.06 -22.57 16 12 C -0.05 -2.42 6.76 39.90 0.27 -2.15 16 13 C -0.15 -6.48 10.55 22.64 0.24 -6.24 16 14 C -0.15 -6.38 6.16 -21.33 -0.13 -6.51 16 15 C -0.08 -2.69 10.06 22.31 0.22 -2.47 16 16 C -0.15 -4.73 9.97 22.03 0.22 -4.51 16 17 C -0.11 -4.01 10.02 22.33 0.22 -3.79 16 18 C -0.12 -5.12 8.82 22.38 0.20 -4.93 16 19 C 0.06 2.72 5.43 39.06 0.21 2.94 16 20 N -0.29 -13.97 2.49 -331.36 -0.82 -14.80 16 21 C -0.47 -22.25 7.50 84.09 0.63 -21.62 16 22 H 0.10 4.70 6.62 -2.91 -0.02 4.68 16 23 C 0.00 0.22 4.53 84.95 0.39 0.61 16 24 N -0.84 -43.36 12.35 21.67 0.27 -43.09 16 25 Si 1.11 40.34 29.95 68.60 2.05 42.39 16 26 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 27 H -0.25 -7.95 7.11 99.48 0.71 -7.24 16 28 H -0.28 -10.16 7.11 99.48 0.71 -9.46 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.12 2.27 8.14 -2.39 -0.02 2.26 16 31 H 0.07 1.55 7.93 -2.39 -0.02 1.53 16 32 H 0.22 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.18 5.87 5.42 -2.91 -0.02 5.85 16 34 H 0.43 18.41 4.23 -92.71 -0.39 18.01 16 35 H 0.16 5.86 8.06 -2.91 -0.02 5.84 16 36 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 37 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 38 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.10 4.58 7.19 -2.91 -0.02 4.56 16 40 H 0.27 14.87 7.14 -92.71 -0.66 14.21 16 Total: -1.00 -61.13 344.35 3.73 -57.41 By element: Atomic # 1 Polarization: 47.20 SS G_CDS: 0.84 Total: 48.04 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 6.38 Total: -8.40 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -4.58 Total: -105.51 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.96 Total: -33.93 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.05 Total: 42.39 kcal Total: -61.13 3.73 -57.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589119011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.192 kcal (2) G-P(sol) polarization free energy of solvation -61.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds