Wall clock time and date at job start Tue Mar 31 2020 20:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 120.00330 * 2 1 4 4 H 1.48503 * 109.47481 * 273.64753 * 3 2 1 5 5 H 1.48504 * 109.47308 * 33.64643 * 3 2 1 6 6 H 1.48500 * 109.47335 * 153.64617 * 3 2 1 7 7 C 1.38818 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00191 * 339.35066 * 7 2 1 9 9 N 1.36940 * 119.99878 * 159.34978 * 7 2 1 10 10 C 1.47041 * 120.45088 * 332.18017 * 9 7 2 11 11 C 1.53381 * 108.59127 * 235.05638 * 10 9 7 12 12 N 1.46967 * 108.77242 * 310.83197 * 11 10 9 13 13 S 1.65596 * 120.59314 * 235.11469 * 12 11 10 14 14 O 1.42095 * 104.28102 * 206.07378 * 13 12 11 15 15 O 1.42100 * 104.27878 * 333.93474 * 13 12 11 16 16 C 1.81402 * 104.44694 * 90.00151 * 13 12 11 17 17 C 1.52997 * 109.47026 * 179.97438 * 16 13 12 18 18 H 1.08997 * 110.43984 * 305.70459 * 17 16 13 19 19 C 1.54272 * 110.48355 * 183.16239 * 17 16 13 20 20 C 1.53880 * 106.59468 * 217.71273 * 19 17 16 21 21 C 1.54262 * 106.60093 * 0.02562 * 20 19 17 22 22 F 1.39903 * 110.48546 * 142.28678 * 21 20 19 23 23 F 1.39899 * 110.48595 * 264.79936 * 21 20 19 24 24 C 1.54888 * 110.48758 * 68.24942 * 17 16 13 25 25 C 1.46965 * 118.81272 * 55.14321 * 12 11 10 26 26 C 1.46967 * 120.59167 * 152.27933 * 9 7 2 27 27 H 0.97001 * 119.99617 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.49234 * 115.40571 * 10 9 7 29 29 H 1.09006 * 109.77246 * 354.86769 * 10 9 7 30 30 H 1.08991 * 109.60812 * 191.00210 * 11 10 9 31 31 H 1.09001 * 109.60758 * 70.66221 * 11 10 9 32 32 H 1.08994 * 109.47519 * 300.00196 * 16 13 12 33 33 H 1.09010 * 109.46927 * 60.00029 * 16 13 12 34 34 H 1.08998 * 110.03750 * 336.99425 * 19 17 16 35 35 H 1.09000 * 110.03089 * 98.38849 * 19 17 16 36 36 H 1.08997 * 110.03185 * 119.29031 * 20 19 17 37 37 H 1.09001 * 110.03345 * 240.66369 * 20 19 17 38 38 H 1.09007 * 110.75407 * 274.93337 * 24 17 16 39 39 H 1.08996 * 110.75516 * 38.29875 * 24 17 16 40 40 H 1.09006 * 109.60975 * 64.51184 * 25 12 11 41 41 H 1.08999 * 109.60925 * 184.85612 * 25 12 11 42 42 H 1.09000 * 109.60679 * 5.02893 * 26 9 7 43 43 H 1.08996 * 109.75363 * 244.59696 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4207 2.0909 -1.3972 5 1 1.4885 2.6292 0.7757 6 1 3.5843 1.4190 0.6215 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2402 -0.4188 10 6 3.8111 -0.2617 -1.3972 11 6 4.4239 -1.0215 -2.5804 12 7 5.3466 -2.0407 -2.0611 13 16 6.9226 -2.0871 -2.5674 14 8 7.3063 -3.4444 -2.3950 15 8 6.8939 -1.4921 -3.8575 16 6 7.8062 -1.0219 -1.3947 17 6 9.2913 -0.9829 -1.7603 18 1 9.6954 -1.9935 -1.8199 19 6 10.0790 -0.1463 -0.7309 20 6 11.1485 0.6287 -1.5204 21 6 10.9731 0.2365 -3.0020 22 9 11.1908 1.3427 -3.8304 23 9 11.8440 -0.8051 -3.3392 24 6 9.5002 -0.2358 -3.1010 25 6 4.8455 -3.0184 -1.0850 26 6 4.2364 -2.2594 0.1005 27 1 -0.4849 0.8401 -0.0004 28 1 4.5719 0.3643 -0.9309 29 1 2.9874 0.3597 -1.7487 30 1 4.9685 -0.3262 -3.2189 31 1 3.6327 -1.5030 -3.1551 32 1 7.3944 -0.0137 -1.4381 33 1 7.6910 -1.4183 -0.3858 34 1 9.4101 0.5503 -0.2256 35 1 10.5544 -0.8025 -0.0019 36 1 10.9987 1.7014 -1.3982 37 1 12.1437 0.3493 -1.1743 38 1 9.3648 -0.9120 -3.9452 39 1 8.8265 0.6177 -3.1765 40 1 4.0826 -3.6424 -1.5508 41 1 5.6681 -3.6439 -0.7383 42 1 3.6916 -2.9547 0.7391 43 1 5.0295 -1.7802 0.6744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589126499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:06 Heat of formation + Delta-G solvation = -144.146759 kcal Electronic energy + Delta-G solvation = -28982.064474 eV Core-core repulsion = 24632.853268 eV Total energy + Delta-G solvation = -4349.211206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.126 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.18123 -47.30770 -38.34169 -38.01660 -37.16455 -35.94861 -34.00169 -31.70625 -31.45657 -30.83854 -29.10650 -26.73373 -25.87133 -23.64699 -23.00424 -21.56975 -21.06300 -20.29009 -18.78907 -18.02004 -17.82212 -17.07881 -16.84384 -16.38950 -16.22713 -15.92992 -15.34111 -15.17319 -14.54302 -14.37279 -14.35776 -14.14802 -14.01408 -13.67571 -13.63100 -13.50071 -13.30358 -12.91586 -12.54475 -12.49591 -12.33788 -12.20468 -12.16773 -12.14489 -11.81483 -11.77531 -11.64693 -11.18965 -11.13840 -11.00750 -10.98107 -10.74002 -10.47370 -10.33560 -9.96881 -9.62755 -9.13710 -8.58306 -7.07731 -6.05777 -3.43181 0.20513 2.63580 3.20283 3.30151 3.37038 3.39910 3.41639 3.62252 3.76245 3.92986 4.09060 4.35285 4.40885 4.49640 4.57633 4.71126 4.75419 4.80928 4.90708 4.94077 4.99979 5.23800 5.26044 5.29853 5.37893 5.47515 5.50394 5.59395 5.64148 5.70352 5.79699 5.83059 5.94040 6.16855 6.23239 6.40656 6.42312 6.67128 6.83619 7.82192 8.21894 8.80404 9.59252 9.95312 11.09969 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017743 B = 0.003530 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.734199 B = 7929.216619 C = 8648.947588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.025 3.975 3 Si 0.880 3.120 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.087 0.913 9 N -0.602 5.602 10 C 0.110 3.890 11 C 0.104 3.896 12 N -0.989 5.989 13 S 2.602 3.398 14 O -0.957 6.957 15 O -0.954 6.954 16 C -0.629 4.629 17 C -0.081 4.081 18 H 0.099 0.901 19 C -0.110 4.110 20 C -0.162 4.162 21 C 0.281 3.719 22 F -0.195 7.195 23 F -0.194 7.194 24 C -0.177 4.177 25 C 0.102 3.898 26 C 0.134 3.866 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.104 -0.025 -2.014 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.710 3.290 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.105 0.895 9 N -0.326 5.326 10 C -0.017 4.017 11 C -0.023 4.023 12 N -0.828 5.828 13 S 2.695 3.305 14 O -0.947 6.947 15 O -0.944 6.944 16 C -0.757 4.757 17 C -0.101 4.101 18 H 0.118 0.882 19 C -0.148 4.148 20 C -0.200 4.200 21 C 0.245 3.755 22 F -0.176 7.176 23 F -0.175 7.175 24 C -0.215 4.215 25 C -0.025 4.025 26 C 0.006 3.994 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 21.268 -0.427 -2.750 21.450 hybrid contribution 0.450 1.540 0.492 1.678 sum 21.718 1.113 -2.258 21.864 Atomic orbital electron populations 1.69834 1.05739 1.26687 1.52399 1.25297 0.95215 0.97574 0.99329 0.86991 0.80076 0.84810 0.77091 1.21432 1.22977 1.19628 1.18935 0.84822 0.94870 1.40641 0.89498 1.44214 1.08628 1.33838 1.45872 1.21785 0.97900 0.92277 0.89735 1.22081 0.93148 0.90034 0.96991 1.57438 1.25656 1.41815 1.57866 1.05235 0.73853 0.75497 0.75871 1.93578 1.82616 1.31497 1.87029 1.93583 1.85676 1.79644 1.35535 1.30826 1.06758 1.18602 1.19542 1.21654 0.92427 1.01273 0.94753 0.88229 1.22148 0.96556 0.98770 0.97331 1.23159 1.02223 1.03356 0.91295 1.21864 0.89299 0.74804 0.89519 1.93018 1.95804 1.53860 1.74920 1.93020 1.71997 1.58677 1.93764 1.23900 0.94121 1.03949 0.99521 1.22087 0.99493 0.90311 0.90583 1.21331 0.93015 0.91966 0.93045 0.92618 0.95369 0.89778 0.89999 0.90390 0.84482 0.84161 0.89616 0.89833 0.88181 0.88744 0.87767 0.86851 0.90671 0.89906 0.90486 0.95641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.97 55.49 0.78 -25.81 16 2 C 0.03 0.69 5.23 -17.43 -0.09 0.60 16 3 Si 0.88 20.90 24.37 -169.99 -4.14 16.75 16 4 H -0.29 -6.50 6.64 56.52 0.38 -6.13 16 5 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.27 -6.21 6.64 56.52 0.38 -5.84 16 7 C -0.26 -6.92 10.03 -15.06 -0.15 -7.07 16 8 H 0.09 2.44 8.06 -52.49 -0.42 2.01 16 9 N -0.60 -13.03 2.74 -171.97 -0.47 -13.51 16 10 C 0.11 2.16 4.37 -3.55 -0.02 2.14 16 11 C 0.10 1.72 6.48 -3.59 -0.02 1.69 16 12 N -0.99 -14.89 3.20 -113.25 -0.36 -15.25 16 13 S 2.60 34.77 5.23 -107.50 -0.56 34.21 16 14 O -0.96 -14.92 16.70 -57.54 -0.96 -15.88 16 15 O -0.95 -14.67 15.41 -57.54 -0.89 -15.55 16 16 C -0.63 -5.89 5.50 37.16 0.20 -5.69 16 17 C -0.08 -0.71 2.87 -88.96 -0.25 -0.96 16 18 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 19 C -0.11 -0.73 6.38 -25.61 -0.16 -0.90 16 20 C -0.16 -1.12 6.42 -25.61 -0.16 -1.29 16 21 C 0.28 2.72 2.49 -25.01 -0.06 2.66 16 22 F -0.20 -2.16 17.17 2.25 0.04 -2.13 16 23 F -0.19 -2.14 17.17 2.25 0.04 -2.10 16 24 C -0.18 -1.72 4.93 -24.68 -0.12 -1.84 16 25 C 0.10 1.53 6.49 -3.60 -0.02 1.51 16 26 C 0.13 2.30 6.68 -3.59 -0.02 2.28 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.52 7.16 -51.93 -0.37 0.15 16 29 H 0.08 1.82 4.43 -51.93 -0.23 1.59 16 30 H 0.08 1.17 7.06 -51.93 -0.37 0.80 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.14 1.13 8.06 -51.93 -0.42 0.72 16 33 H 0.14 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.09 0.52 7.84 -51.93 -0.41 0.11 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.59 8.11 -51.93 -0.42 0.17 16 37 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.10 1.09 7.61 -51.92 -0.39 0.69 16 39 H 0.11 1.00 8.00 -51.93 -0.42 0.59 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.05 7.06 -51.93 -0.37 0.68 16 42 H 0.08 1.30 7.93 -51.93 -0.41 0.89 16 43 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -32.95 350.76 -8.51 -41.46 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.37 Total: -0.62 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.89 Total: -6.86 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.06 Total: -54.57 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -1.85 Total: -31.43 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.08 Total: -4.23 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.14 Total: 16.75 kcal Atomic # 16 Polarization: 34.77 SS G_CDS: -0.56 Total: 34.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.95 -8.51 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589126499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.684 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds