Wall clock time and date at job start Tue Mar 31 2020 20:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 120.00330 * 2 1 4 4 H 1.48503 * 109.47481 * 273.64753 * 3 2 1 5 5 H 1.48504 * 109.47308 * 33.64643 * 3 2 1 6 6 H 1.48500 * 109.47335 * 153.64617 * 3 2 1 7 7 C 1.38818 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00191 * 339.35066 * 7 2 1 9 9 N 1.36940 * 119.99878 * 159.34978 * 7 2 1 10 10 C 1.47041 * 120.45088 * 332.18017 * 9 7 2 11 11 C 1.53381 * 108.59127 * 235.05638 * 10 9 7 12 12 N 1.46967 * 108.77242 * 310.83197 * 11 10 9 13 13 S 1.65596 * 120.59314 * 235.11469 * 12 11 10 14 14 O 1.42095 * 104.28102 * 206.07378 * 13 12 11 15 15 O 1.42100 * 104.27878 * 333.93474 * 13 12 11 16 16 C 1.81402 * 104.44694 * 90.00151 * 13 12 11 17 17 C 1.52997 * 109.47026 * 179.97438 * 16 13 12 18 18 H 1.08997 * 110.43984 * 305.70459 * 17 16 13 19 19 C 1.54272 * 110.48355 * 183.16239 * 17 16 13 20 20 C 1.53880 * 106.59468 * 217.71273 * 19 17 16 21 21 C 1.54262 * 106.60093 * 0.02562 * 20 19 17 22 22 F 1.39903 * 110.48546 * 142.28678 * 21 20 19 23 23 F 1.39899 * 110.48595 * 264.79936 * 21 20 19 24 24 C 1.54888 * 110.48758 * 68.24942 * 17 16 13 25 25 C 1.46965 * 118.81272 * 55.14321 * 12 11 10 26 26 C 1.46967 * 120.59167 * 152.27933 * 9 7 2 27 27 H 0.97001 * 119.99617 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.49234 * 115.40571 * 10 9 7 29 29 H 1.09006 * 109.77246 * 354.86769 * 10 9 7 30 30 H 1.08991 * 109.60812 * 191.00210 * 11 10 9 31 31 H 1.09001 * 109.60758 * 70.66221 * 11 10 9 32 32 H 1.08994 * 109.47519 * 300.00196 * 16 13 12 33 33 H 1.09010 * 109.46927 * 60.00029 * 16 13 12 34 34 H 1.08998 * 110.03750 * 336.99425 * 19 17 16 35 35 H 1.09000 * 110.03089 * 98.38849 * 19 17 16 36 36 H 1.08997 * 110.03185 * 119.29031 * 20 19 17 37 37 H 1.09001 * 110.03345 * 240.66369 * 20 19 17 38 38 H 1.09007 * 110.75407 * 274.93337 * 24 17 16 39 39 H 1.08996 * 110.75516 * 38.29875 * 24 17 16 40 40 H 1.09006 * 109.60975 * 64.51184 * 25 12 11 41 41 H 1.08999 * 109.60925 * 184.85612 * 25 12 11 42 42 H 1.09000 * 109.60679 * 5.02893 * 26 9 7 43 43 H 1.08996 * 109.75363 * 244.59696 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4207 2.0909 -1.3972 5 1 1.4885 2.6292 0.7757 6 1 3.5843 1.4190 0.6215 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2402 -0.4188 10 6 3.8111 -0.2617 -1.3972 11 6 4.4239 -1.0215 -2.5804 12 7 5.3466 -2.0407 -2.0611 13 16 6.9226 -2.0871 -2.5674 14 8 7.3063 -3.4444 -2.3950 15 8 6.8939 -1.4921 -3.8575 16 6 7.8062 -1.0219 -1.3947 17 6 9.2913 -0.9829 -1.7603 18 1 9.6954 -1.9935 -1.8199 19 6 10.0790 -0.1463 -0.7309 20 6 11.1485 0.6287 -1.5204 21 6 10.9731 0.2365 -3.0020 22 9 11.1908 1.3427 -3.8304 23 9 11.8440 -0.8051 -3.3392 24 6 9.5002 -0.2358 -3.1010 25 6 4.8455 -3.0184 -1.0850 26 6 4.2364 -2.2594 0.1005 27 1 -0.4849 0.8401 -0.0004 28 1 4.5719 0.3643 -0.9309 29 1 2.9874 0.3597 -1.7487 30 1 4.9685 -0.3262 -3.2189 31 1 3.6327 -1.5030 -3.1551 32 1 7.3944 -0.0137 -1.4381 33 1 7.6910 -1.4183 -0.3858 34 1 9.4101 0.5503 -0.2256 35 1 10.5544 -0.8025 -0.0019 36 1 10.9987 1.7014 -1.3982 37 1 12.1437 0.3493 -1.1743 38 1 9.3648 -0.9120 -3.9452 39 1 8.8265 0.6177 -3.1765 40 1 4.0826 -3.6424 -1.5508 41 1 5.6681 -3.6439 -0.7383 42 1 3.6916 -2.9547 0.7391 43 1 5.0295 -1.7802 0.6744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589126499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:05 Heat of formation + Delta-G solvation = -167.297993 kcal Electronic energy + Delta-G solvation = -28983.068387 eV Core-core repulsion = 24632.853268 eV Total energy + Delta-G solvation = -4350.215119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.94353 -48.08978 -39.43297 -38.96228 -38.27221 -37.05642 -35.61202 -33.30889 -32.36162 -32.22509 -29.73351 -28.34430 -26.56271 -25.11890 -24.59074 -22.25948 -22.01385 -21.34016 -19.99749 -19.18014 -18.69574 -18.21741 -17.76286 -17.58041 -17.25225 -17.01702 -16.80294 -15.99983 -15.94447 -15.59903 -15.42381 -15.20464 -14.99015 -14.82793 -14.53941 -14.43922 -14.34580 -14.15699 -14.01571 -13.69554 -13.29331 -13.18549 -13.16303 -13.09332 -12.86123 -12.78761 -12.72429 -12.43579 -12.39707 -12.17065 -11.92873 -11.73587 -11.65874 -11.59795 -11.52198 -11.37528 -10.79890 -10.12688 -8.82785 -8.12872 -5.45808 -0.80084 1.34355 1.45814 1.53480 1.57622 2.45750 2.61641 2.80070 2.80687 3.01184 3.07475 3.10803 3.25215 3.37410 3.60345 3.76065 3.85025 3.92516 4.14960 4.17695 4.24448 4.29772 4.37989 4.38486 4.41877 4.49364 4.56014 4.61805 4.68067 4.73998 4.87007 4.89690 4.91899 5.05325 5.10408 5.12629 5.19961 5.36014 5.57043 5.89107 6.16743 6.93861 7.64629 8.03940 9.06974 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017743 B = 0.003530 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.734199 B = 7929.216619 C = 8648.947588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.038 4.038 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.317 1.317 6 H -0.247 1.247 7 C -0.250 4.250 8 H 0.050 0.950 9 N -0.617 5.617 10 C 0.104 3.896 11 C 0.111 3.889 12 N -0.995 5.995 13 S 2.599 3.401 14 O -0.985 6.985 15 O -0.981 6.981 16 C -0.603 4.603 17 C -0.086 4.086 18 H 0.100 0.900 19 C -0.104 4.104 20 C -0.157 4.157 21 C 0.270 3.730 22 F -0.207 7.207 23 F -0.206 7.206 24 C -0.187 4.187 25 C 0.107 3.893 26 C 0.129 3.871 27 H 0.260 0.740 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.057 0.943 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.452 1.279 -0.832 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.233 4.233 3 Si 0.773 3.227 4 H -0.198 1.198 5 H -0.246 1.246 6 H -0.171 1.171 7 C -0.379 4.379 8 H 0.068 0.932 9 N -0.342 5.342 10 C -0.023 4.023 11 C -0.016 4.016 12 N -0.832 5.832 13 S 2.698 3.302 14 O -0.976 6.976 15 O -0.972 6.972 16 C -0.735 4.735 17 C -0.107 4.107 18 H 0.119 0.881 19 C -0.142 4.142 20 C -0.194 4.194 21 C 0.234 3.766 22 F -0.188 7.188 23 F -0.188 7.188 24 C -0.225 4.225 25 C -0.020 4.020 26 C 0.003 3.997 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.178 0.822 33 H 0.187 0.813 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.076 0.924 41 H 0.130 0.870 42 H 0.089 0.911 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 24.647 0.817 -1.617 24.714 hybrid contribution -0.510 1.015 0.079 1.139 sum 24.138 1.832 -1.538 24.256 Atomic orbital electron populations 1.69993 1.07746 1.27245 1.55615 1.25973 0.95790 1.01318 1.00178 0.85929 0.79302 0.79717 0.77704 1.19790 1.24639 1.17094 1.18860 0.86872 0.93481 1.38723 0.93207 1.44330 1.07763 1.35252 1.46870 1.21886 0.97762 0.92236 0.90374 1.21860 0.93424 0.90455 0.95860 1.57437 1.26445 1.41503 1.57820 1.05223 0.73344 0.75496 0.76164 1.93542 1.82600 1.33918 1.87496 1.93549 1.85827 1.79798 1.38027 1.30601 1.06131 1.18151 1.18653 1.21768 0.92164 1.01831 0.94889 0.88139 1.22195 0.96370 0.98924 0.96755 1.23202 1.03150 1.04299 0.88796 1.22273 0.89049 0.74251 0.91059 1.92991 1.95857 1.54402 1.75587 1.92993 1.72406 1.59322 1.94030 1.23995 0.94523 1.04184 0.99793 1.21979 1.00089 0.90171 0.89736 1.21541 0.92916 0.91173 0.94034 0.93069 0.92671 0.92163 0.87465 0.92315 0.82226 0.81302 0.87990 0.88111 0.86832 0.87637 0.89454 0.85955 0.92448 0.87025 0.91058 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.54 13.97 21.65 0.30 -58.24 16 2 C -0.04 -2.11 5.23 84.86 0.44 -1.67 16 3 Si 0.95 42.67 24.37 68.60 1.67 44.35 16 4 H -0.27 -11.44 6.64 99.48 0.66 -10.78 16 5 H -0.32 -14.99 7.11 99.48 0.71 -14.28 16 6 H -0.25 -10.07 6.64 99.48 0.66 -9.41 16 7 C -0.25 -13.27 10.03 84.03 0.84 -12.43 16 8 H 0.05 2.94 8.06 -2.91 -0.02 2.91 16 9 N -0.62 -25.90 2.74 -697.98 -1.91 -27.82 16 10 C 0.10 3.80 4.37 86.40 0.38 4.18 16 11 C 0.11 3.44 6.48 86.42 0.56 4.00 16 12 N -1.00 -27.48 3.20 -512.21 -1.64 -29.12 16 13 S 2.60 62.42 5.23 -56.49 -0.30 62.13 16 14 O -0.98 -28.71 16.70 -127.65 -2.13 -30.84 16 15 O -0.98 -28.51 15.41 -127.65 -1.97 -30.48 16 16 C -0.60 -8.21 5.50 71.98 0.40 -7.81 16 17 C -0.09 -1.15 2.87 -9.72 -0.03 -1.18 16 18 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 19 C -0.10 -0.85 6.38 31.32 0.20 -0.65 16 20 C -0.16 -1.55 6.42 31.32 0.20 -1.35 16 21 C 0.27 4.61 2.49 31.71 0.08 4.69 16 22 F -0.21 -4.27 17.17 44.97 0.77 -3.50 16 23 F -0.21 -4.28 17.17 44.97 0.77 -3.51 16 24 C -0.19 -3.17 4.93 31.92 0.16 -3.01 16 25 C 0.11 2.99 6.49 86.42 0.56 3.56 16 26 C 0.13 4.15 6.68 86.42 0.58 4.72 16 27 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.06 1.75 7.16 -2.39 -0.02 1.73 16 29 H 0.06 2.50 4.43 -2.38 -0.01 2.49 16 30 H 0.11 2.77 7.06 -2.39 -0.02 2.75 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.16 1.63 8.06 -2.39 -0.02 1.61 16 33 H 0.17 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 0.57 7.84 -2.39 -0.02 0.55 16 35 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.11 0.84 8.11 -2.39 -0.02 0.82 16 37 H 0.11 0.83 8.12 -2.39 -0.02 0.81 16 38 H 0.09 1.75 7.61 -2.38 -0.02 1.73 16 39 H 0.12 1.80 8.00 -2.39 -0.02 1.78 16 40 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.11 2.49 7.06 -2.39 -0.02 2.48 16 42 H 0.07 2.33 7.93 -2.39 -0.02 2.31 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -74.38 350.76 0.86 -73.52 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.92 Total: 10.44 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 4.37 Total: -6.95 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -3.25 Total: -115.17 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -4.10 Total: -61.31 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 1.54 Total: -7.01 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.67 Total: 44.35 kcal Atomic # 16 Polarization: 62.42 SS G_CDS: -0.30 Total: 62.13 kcal Total: -74.38 0.86 -73.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589126499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.776 kcal (2) G-P(sol) polarization free energy of solvation -74.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds