Wall clock time and date at job start Tue Mar 31 2020 20:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47374 * 270.00041 * 3 2 1 5 5 H 1.48498 * 109.46972 * 30.00423 * 3 2 1 6 6 H 1.48504 * 109.47003 * 150.00144 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 162.55448 * 7 2 1 9 9 N 1.36935 * 120.00405 * 342.82520 * 7 2 1 10 10 C 1.46962 * 120.59568 * 151.29568 * 9 7 2 11 11 C 1.53817 * 108.39975 * 124.76033 * 10 9 7 12 12 N 1.46958 * 108.58063 * 49.63438 * 11 10 9 13 13 S 1.65605 * 120.59434 * 124.66940 * 12 11 10 14 14 O 1.42097 * 104.27421 * 26.05006 * 13 12 11 15 15 O 1.42098 * 104.27388 * 153.90903 * 13 12 11 16 16 C 1.81404 * 104.44750 * 269.97835 * 13 12 11 17 17 C 1.53000 * 109.46510 * 179.97438 * 16 13 12 18 18 H 1.08997 * 110.44125 * 305.69763 * 17 16 13 19 19 C 1.54889 * 110.48626 * 68.24863 * 17 16 13 20 20 C 1.55028 * 102.68569 * 156.51594 * 19 17 16 21 21 C 1.54265 * 104.27877 * 322.22584 * 20 19 17 22 22 F 1.39896 * 110.03725 * 264.23811 * 21 20 19 23 23 F 1.39907 * 110.07251 * 142.82478 * 21 20 19 24 24 C 1.53880 * 106.59874 * 23.52382 * 21 20 19 25 25 C 1.46967 * 118.81430 * 304.65242 * 12 11 10 26 26 C 1.46972 * 120.59045 * 331.57419 * 9 7 2 27 27 H 0.97004 * 120.00040 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.60789 * 244.54097 * 10 9 7 29 29 H 1.09004 * 109.61164 * 5.04970 * 10 9 7 30 30 H 1.09002 * 109.74021 * 289.84554 * 11 10 9 31 31 H 1.08997 * 109.67441 * 169.38598 * 11 10 9 32 32 H 1.09000 * 109.47057 * 299.99673 * 16 13 12 33 33 H 1.08999 * 109.47141 * 59.99930 * 16 13 12 34 34 H 1.09007 * 110.75117 * 274.93016 * 19 17 16 35 35 H 1.08999 * 110.76218 * 38.29659 * 19 17 16 36 36 H 1.09004 * 110.52459 * 203.48600 * 20 19 17 37 37 H 1.08992 * 110.48425 * 80.95302 * 20 19 17 38 38 H 1.09001 * 110.03177 * 240.71876 * 24 21 20 39 39 H 1.08994 * 110.07491 * 119.30070 * 24 21 20 40 40 H 1.09005 * 109.60801 * 295.48249 * 25 12 11 41 41 H 1.08997 * 109.75582 * 175.05370 * 25 12 11 42 42 H 1.08999 * 109.61106 * 354.94403 * 26 9 7 43 43 H 1.08997 * 109.60295 * 115.45931 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2810 9 7 1.3714 -2.3617 0.3491 10 6 1.8065 -3.6517 -0.2045 11 6 2.1102 -4.6041 0.9645 12 7 0.9733 -4.5803 1.8954 13 16 0.2006 -5.9826 2.3182 14 8 1.1875 -6.9910 2.1497 15 8 -0.3529 -5.7057 3.5974 16 6 -1.1141 -6.1655 1.0818 17 6 -1.9089 -7.4413 1.3676 18 1 -1.2415 -8.3012 1.4233 19 6 -2.7152 -7.2946 2.6819 20 6 -3.8585 -8.3251 2.4967 21 6 -4.2236 -8.2237 1.0014 22 9 -5.3096 -7.3585 0.8307 23 9 -4.5366 -9.4905 0.4965 24 6 -2.9840 -7.6618 0.2833 25 6 0.5345 -3.2896 2.4447 26 6 0.2343 -2.3379 1.2801 27 1 -0.4850 0.8401 0.0004 28 1 1.0133 -4.0701 -0.8242 29 1 2.7053 -3.5079 -0.8043 30 1 3.0127 -4.2771 1.4809 31 1 2.2518 -5.6163 0.5859 32 1 -1.7800 -5.3038 1.1293 33 1 -0.6717 -6.2285 0.0876 34 1 -2.0984 -7.5495 3.5438 35 1 -3.1173 -6.2861 2.7781 36 1 -4.7150 -8.0613 3.1172 37 1 -3.5095 -9.3293 2.7370 38 1 -3.2286 -6.7149 -0.1980 39 1 -2.6255 -8.3757 -0.4582 40 1 1.3248 -2.8690 3.0664 41 1 -0.3656 -3.4308 3.0430 42 1 0.0947 -1.3262 1.6611 43 1 -0.6681 -2.6649 0.7636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589126503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:09 Heat of formation + Delta-G solvation = -171.371144 kcal Electronic energy + Delta-G solvation = -28777.393209 eV Core-core repulsion = 24427.001465 eV Total energy + Delta-G solvation = -4350.391744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.126 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.95362 -48.03784 -39.18091 -38.96433 -38.21758 -37.01192 -35.55242 -32.89500 -32.29633 -31.79469 -29.78253 -28.19014 -26.49266 -24.97823 -24.43957 -22.23794 -21.89383 -21.26193 -19.94976 -19.15535 -18.72609 -18.00567 -17.87855 -17.51145 -17.11161 -16.74057 -16.67960 -15.68432 -15.50896 -15.38257 -15.34772 -15.25346 -15.14881 -14.97891 -14.58627 -14.52648 -14.37521 -13.73033 -13.59383 -13.49054 -13.34519 -13.20954 -12.96556 -12.87051 -12.79101 -12.58999 -12.58320 -12.45005 -12.23180 -12.13101 -11.98323 -11.96388 -11.79832 -11.76544 -11.55898 -11.28068 -10.56989 -10.07506 -8.59561 -7.85304 -5.31141 -0.74651 1.48427 1.51732 1.59391 1.62258 2.53197 2.65615 2.81329 2.92732 3.02833 3.14542 3.29309 3.30327 3.64332 3.68684 3.73571 3.88300 3.96857 4.12664 4.19947 4.27020 4.31896 4.40212 4.50289 4.59276 4.65677 4.69784 4.71518 4.75953 4.82209 4.92675 4.95550 4.99489 5.12414 5.15716 5.27591 5.34796 5.62859 5.66232 5.79666 6.40801 7.16594 7.86874 8.38128 9.19232 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.003174 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.442837 B = 8820.249966 C = 9603.376418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.045 4.045 3 Si 0.962 3.038 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.126 3.874 11 C 0.109 3.891 12 N -0.995 5.995 13 S 2.614 3.386 14 O -0.982 6.982 15 O -0.977 6.977 16 C -0.611 4.611 17 C -0.082 4.082 18 H 0.114 0.886 19 C -0.147 4.147 20 C -0.154 4.154 21 C 0.272 3.728 22 F -0.210 7.210 23 F -0.207 7.207 24 C -0.151 4.151 25 C 0.109 3.891 26 C 0.161 3.839 27 H 0.250 0.750 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.146 0.854 33 H 0.156 0.844 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.680 -17.286 3.091 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.241 4.241 3 Si 0.790 3.210 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.332 5.332 10 C -0.001 4.001 11 C -0.017 4.017 12 N -0.832 5.832 13 S 2.711 3.289 14 O -0.973 6.973 15 O -0.967 6.967 16 C -0.743 4.743 17 C -0.102 4.102 18 H 0.132 0.868 19 C -0.185 4.185 20 C -0.192 4.192 21 C 0.236 3.764 22 F -0.191 7.191 23 F -0.188 7.188 24 C -0.190 4.190 25 C -0.018 4.018 26 C 0.034 3.966 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.164 0.836 33 H 0.174 0.826 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -5.539 -17.697 3.817 18.932 hybrid contribution -0.278 1.546 -0.875 1.798 sum -5.817 -16.151 2.942 17.417 Atomic orbital electron populations 1.70132 1.06430 1.25856 1.55235 1.25690 0.95967 1.01154 1.01281 0.85372 0.78132 0.80053 0.77408 1.21380 1.22038 1.19848 1.19489 0.93006 0.85988 1.40738 0.91565 1.44167 1.36699 1.02375 1.49927 1.21578 0.98633 0.86176 0.93712 1.22032 0.87979 1.00948 0.90782 1.57434 1.44058 1.21773 1.59964 1.04787 0.75646 0.72390 0.76070 1.93537 1.57695 1.58402 1.87617 1.93542 1.80833 1.84051 1.38283 1.30648 1.17363 1.06784 1.19499 1.21776 0.96857 0.95801 0.95777 0.86822 1.23015 0.97132 1.00938 0.97381 1.23389 1.01075 1.03288 0.91455 1.22124 0.83973 0.73488 0.96865 1.93006 1.59021 1.70329 1.96728 1.93001 1.94264 1.42132 1.89398 1.23211 0.92023 1.04942 0.98777 1.22007 1.00086 0.83365 0.96363 1.21042 0.88549 0.98034 0.88997 0.94067 0.95021 0.91192 0.91831 0.87582 0.83600 0.82599 0.88576 0.89280 0.87640 0.86405 0.87812 0.86653 0.92395 0.88505 0.91504 0.96758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.85 11.20 21.65 0.24 -51.61 16 2 C -0.05 -2.39 4.91 84.86 0.42 -1.97 16 3 Si 0.96 43.06 29.59 68.60 2.03 45.09 16 4 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.26 -13.53 9.57 84.03 0.80 -12.72 16 8 H 0.07 3.34 7.89 -2.91 -0.02 3.32 16 9 N -0.61 -27.94 2.96 -697.32 -2.06 -30.01 16 10 C 0.13 4.54 6.70 86.57 0.58 5.12 16 11 C 0.11 3.33 6.50 86.57 0.56 3.90 16 12 N -1.00 -30.51 3.20 -511.43 -1.63 -32.15 16 13 S 2.61 68.00 5.23 -56.49 -0.30 67.70 16 14 O -0.98 -29.29 16.70 -127.65 -2.13 -31.42 16 15 O -0.98 -29.42 15.41 -127.65 -1.97 -31.39 16 16 C -0.61 -11.27 5.50 71.98 0.40 -10.87 16 17 C -0.08 -1.31 2.87 -9.72 -0.03 -1.33 16 18 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 19 C -0.15 -2.40 5.35 31.93 0.17 -2.23 16 20 C -0.15 -2.17 6.40 31.72 0.20 -1.97 16 21 C 0.27 4.82 2.57 31.32 0.08 4.90 16 22 F -0.21 -4.62 17.04 44.97 0.77 -3.86 16 23 F -0.21 -4.10 17.04 44.97 0.77 -3.33 16 24 C -0.15 -2.29 6.07 31.32 0.19 -2.10 16 25 C 0.11 3.79 6.48 86.41 0.56 4.35 16 26 C 0.16 6.99 5.51 86.41 0.48 7.46 16 27 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 28 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.07 2.44 7.93 -2.39 -0.02 2.42 16 30 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 31 H 0.11 2.64 7.05 -2.39 -0.02 2.63 16 32 H 0.15 2.60 8.06 -2.39 -0.02 2.59 16 33 H 0.16 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.10 1.56 7.61 -2.38 -0.02 1.54 16 35 H 0.09 1.52 8.00 -2.39 -0.02 1.50 16 36 H 0.11 1.33 8.11 -2.39 -0.02 1.31 16 37 H 0.12 1.26 8.12 -2.39 -0.02 1.24 16 38 H 0.10 1.60 7.71 -2.39 -0.02 1.59 16 39 H 0.12 1.42 8.02 -2.39 -0.02 1.40 16 40 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.10 2.98 7.07 -2.39 -0.02 2.96 16 42 H 0.07 3.35 6.00 -2.39 -0.01 3.33 16 43 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -67.09 356.86 1.14 -65.95 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.01 Total: 12.50 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 4.41 Total: -7.48 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -3.46 Total: -113.77 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -4.10 Total: -62.81 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 1.53 Total: -7.19 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 68.00 SS G_CDS: -0.30 Total: 67.70 kcal Total: -67.09 1.14 -65.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589126503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.419 kcal (2) G-P(sol) polarization free energy of solvation -67.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds