Wall clock time and date at job start Tue Mar 31 2020 21:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.35591 * 119.66739 * 2 1 4 4 H 0.96998 * 119.27334 * 359.97438 * 3 2 1 5 5 C 1.35505 * 121.45210 * 179.97438 * 3 2 1 6 6 C 1.35250 * 120.71284 * 0.02562 * 5 3 2 7 7 C 1.41302 * 119.27525 * 0.02562 * 6 5 3 8 8 N 1.34363 * 120.67191 * 179.97438 * 7 6 5 9 9 C 1.33214 * 119.99842 * 5.34888 * 8 7 6 10 10 O 1.21939 * 119.99866 * 55.46813 * 9 8 7 11 11 N 1.34776 * 120.00172 * 235.46248 * 9 8 7 12 12 C 1.47076 * 120.87876 * 0.03194 * 11 9 8 13 13 C 1.53246 * 108.51831 * 231.16029 * 12 11 9 14 14 N 1.46896 * 109.33942 * 306.16591 * 13 12 11 15 15 C 1.46896 * 111.00037 * 187.25652 * 14 13 12 16 16 C 1.50703 * 109.46968 * 170.00625 * 15 14 13 17 17 H 1.07997 * 120.00440 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99781 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00134 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00190 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.47262 * 90.00415 * 20 18 16 22 22 H 1.48505 * 109.47443 * 210.00292 * 20 18 16 23 23 H 1.48503 * 109.47367 * 330.00421 * 20 18 16 24 24 C 1.46905 * 111.26812 * 63.10594 * 14 13 12 25 25 C 1.47076 * 120.88420 * 180.02562 * 11 9 8 26 26 C 1.35320 * 119.66434 * 180.28133 * 2 1 3 27 27 Cl 1.73596 * 120.38352 * 359.97438 * 26 2 1 28 28 H 1.09005 * 109.46735 * 90.00095 * 1 2 3 29 29 H 1.08994 * 109.47325 * 210.00153 * 1 2 3 30 30 H 1.08998 * 109.47097 * 330.00582 * 1 2 3 31 31 H 1.08007 * 119.64320 * 180.02562 * 5 3 2 32 32 H 1.08001 * 120.35889 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.63469 * 111.45265 * 12 11 9 34 34 H 1.09004 * 109.63458 * 350.86482 * 12 11 9 35 35 H 1.09005 * 109.49025 * 186.20987 * 13 12 11 36 36 H 1.08999 * 109.49157 * 66.12932 * 13 12 11 37 37 H 1.09002 * 109.46887 * 289.99774 * 15 14 13 38 38 H 1.08996 * 109.47508 * 50.00102 * 15 14 13 39 39 H 0.97000 * 119.99990 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.49088 * 56.85611 * 24 14 13 41 41 H 1.08998 * 109.49406 * 176.90711 * 24 14 13 42 42 H 1.09006 * 109.62962 * 9.13115 * 25 11 9 43 43 H 1.09008 * 109.63079 * 248.55144 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1781 1.1782 0.0000 4 1 1.6777 2.0091 -0.0004 5 6 3.5325 1.2204 0.0005 6 6 4.2591 0.0796 0.0005 7 6 3.5908 -1.1653 -0.0006 8 7 4.2849 -2.3158 -0.0011 9 6 5.6124 -2.2929 0.1070 10 8 6.1376 -1.7270 1.0508 11 7 6.3751 -2.8951 -0.8269 12 6 5.7621 -3.5827 -1.9735 13 6 6.3549 -4.9926 -2.0694 14 7 7.8206 -4.9023 -2.1103 15 6 8.4218 -6.2162 -2.3748 16 6 9.8934 -6.0485 -2.6527 17 1 10.3376 -5.0642 -2.6351 18 6 10.6726 -7.1515 -2.9305 19 7 11.9568 -7.0052 -3.1735 20 14 9.9043 -8.8539 -2.9616 21 1 9.4255 -9.1559 -4.3346 22 1 10.9174 -9.8618 -2.5579 23 1 8.7590 -8.8976 -2.0173 24 6 8.3534 -4.3191 -0.8717 25 6 7.8424 -2.8822 -0.7265 26 6 2.1767 -1.1758 -0.0058 27 17 1.3100 -2.6799 -0.0125 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 4.0372 2.1753 0.0009 32 1 5.3384 0.1200 0.0014 33 1 5.9778 -3.0318 -2.8890 34 1 4.6838 -3.6481 -1.8276 35 1 5.9949 -5.4776 -2.9767 36 1 6.0505 -5.5750 -1.1998 37 1 8.2873 -6.8590 -1.5048 38 1 7.9380 -6.6697 -3.2398 39 1 12.5050 -7.7813 -3.3686 40 1 8.0212 -4.9110 -0.0188 41 1 9.4427 -4.3162 -0.9103 42 1 8.1395 -2.4843 0.2439 43 1 8.2584 -2.2637 -1.5219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602931156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:46 Heat of formation + Delta-G solvation = 45.420194 kcal Electronic energy + Delta-G solvation = -26743.931296 eV Core-core repulsion = 22851.585810 eV Total energy + Delta-G solvation = -3892.345486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35283 -39.76278 -37.65046 -36.82298 -35.20070 -34.17389 -33.40173 -32.27056 -31.19522 -30.31463 -28.64686 -28.28470 -25.57446 -23.96625 -23.53762 -22.83211 -21.43469 -20.27056 -19.33702 -18.72984 -17.69774 -17.00594 -16.64987 -16.21869 -15.83252 -15.64778 -14.97635 -14.50862 -14.37123 -14.32695 -14.06817 -13.83980 -13.66519 -13.43061 -13.32828 -13.07994 -12.73687 -12.63359 -12.43914 -12.31579 -11.97880 -11.44113 -11.32977 -11.03605 -10.93057 -10.81386 -10.63029 -10.44302 -10.42032 -10.14100 -9.82930 -9.71659 -9.25762 -9.02006 -8.52338 -8.22022 -7.75292 -7.29732 -6.00995 -3.98056 0.48605 0.73806 1.73713 2.47612 2.75370 3.16825 3.32618 3.39905 3.43448 3.70183 3.78301 4.10652 4.39852 4.46604 4.59514 4.71636 4.78174 4.84579 5.01936 5.13934 5.25041 5.31426 5.45699 5.53498 5.61972 5.74301 5.79847 5.93309 6.00489 6.15575 6.21501 6.26624 6.33611 6.46749 6.56345 6.64746 6.84804 6.99648 7.09393 7.55940 7.63746 7.92235 8.07460 8.10377 8.70300 8.88854 9.07127 9.61007 11.12001 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023662 B = 0.002481 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.062317 B =11283.556877 C =12087.088184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.167 3.833 3 N -0.580 5.580 4 H 0.424 0.576 5 C 0.129 3.871 6 C -0.231 4.231 7 C 0.316 3.684 8 N -0.601 5.601 9 C 0.670 3.330 10 O -0.602 6.602 11 N -0.603 5.603 12 C 0.123 3.877 13 C 0.038 3.962 14 N -0.527 5.527 15 C 0.162 3.838 16 C -0.508 4.508 17 H 0.081 0.919 18 C 0.068 3.932 19 N -0.901 5.901 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.051 3.949 25 C 0.124 3.876 26 C -0.119 4.119 27 Cl -0.026 7.026 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.174 0.826 32 H 0.157 0.843 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.027 0.973 37 H -0.012 1.012 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.024 0.976 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.344 21.513 5.309 35.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.053 3.947 3 N -0.187 5.187 4 H 0.261 0.739 5 C 0.000 4.000 6 C -0.258 4.258 7 C 0.152 3.848 8 N -0.336 5.336 9 C 0.372 3.628 10 O -0.483 6.483 11 N -0.338 5.338 12 C 0.000 4.000 13 C -0.091 4.091 14 N -0.252 5.252 15 C 0.036 3.964 16 C -0.546 4.546 17 H 0.099 0.901 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.702 3.298 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.193 1.193 24 C -0.078 4.078 25 C 0.001 3.999 26 C -0.155 4.155 27 Cl 0.003 6.997 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.191 0.809 32 H 0.175 0.825 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.045 0.955 37 H 0.006 0.994 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.119 0.881 42 H 0.106 0.894 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.742 20.860 5.338 35.118 hybrid contribution -0.183 -0.981 0.585 1.156 sum -27.926 19.879 5.923 34.787 Atomic orbital electron populations 1.21140 0.86894 1.05515 1.04956 1.19985 0.95014 0.84657 0.95002 1.40953 1.06229 1.08102 1.63413 0.73935 1.21832 0.81925 1.00967 0.95300 1.21831 1.02295 0.91152 1.10503 1.18412 0.90889 0.89103 0.86442 1.68687 1.07368 1.25672 1.31898 1.17171 0.84769 0.78243 0.82596 1.90927 1.75554 1.48223 1.33576 1.47715 1.06793 1.55732 1.23545 1.21720 0.97737 0.92521 0.88050 1.22443 0.90482 0.95644 1.00535 1.61905 1.02697 1.26794 1.33776 1.20170 0.96283 0.85101 0.94844 1.21032 0.90566 0.95813 1.47238 0.90060 1.24895 0.94735 0.98809 0.94903 1.69895 1.05231 1.30355 1.48488 0.86866 0.79375 0.84743 0.78809 1.20150 1.21231 1.19284 1.22372 1.01817 0.93113 0.90523 1.21758 0.77924 0.97768 1.02463 1.19588 0.90611 0.87651 1.17612 1.98363 1.74590 1.29798 1.96959 0.88579 0.88190 0.89977 0.80908 0.82524 0.91537 0.89227 0.90354 0.95471 0.99425 0.95709 0.92700 0.95807 0.88112 0.89433 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.22 9.66 36.00 0.35 0.13 16 2 C 0.17 0.84 6.81 -81.97 -0.56 0.28 16 3 N -0.58 -1.53 5.24 -9.28 -0.05 -1.58 16 4 H 0.42 -0.68 8.77 -40.82 -0.36 -1.03 16 5 C 0.13 0.61 11.17 -16.99 -0.19 0.42 16 6 C -0.23 -2.42 8.92 -39.48 -0.35 -2.77 16 7 C 0.32 4.13 6.56 -84.38 -0.55 3.58 16 8 N -0.60 -10.21 8.52 -14.58 -0.12 -10.33 16 9 C 0.67 12.88 6.81 -88.30 -0.60 12.28 16 10 O -0.60 -12.93 15.05 4.97 0.07 -12.86 16 11 N -0.60 -11.26 3.01 -178.61 -0.54 -11.80 16 12 C 0.12 2.10 6.59 -3.60 -0.02 2.08 16 13 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 14 N -0.53 -11.81 4.62 -235.78 -1.09 -12.90 16 15 C 0.16 4.12 3.79 -4.98 -0.02 4.11 16 16 C -0.51 -14.79 8.96 -34.44 -0.31 -15.10 16 17 H 0.08 2.55 7.37 -52.49 -0.39 2.16 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 19 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 20 Si 0.87 22.14 27.47 -169.99 -4.67 17.47 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 24 C 0.05 1.09 5.46 -3.72 -0.02 1.07 16 25 C 0.12 2.35 6.60 -3.62 -0.02 2.33 16 26 C -0.12 -1.15 6.32 -39.41 -0.25 -1.40 16 27 Cl -0.03 -0.27 26.80 -51.86 -1.39 -1.65 16 28 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.10 0.27 6.84 -51.93 -0.36 -0.08 16 30 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 31 H 0.17 0.14 8.06 -52.48 -0.42 -0.28 16 32 H 0.16 2.00 6.41 -52.49 -0.34 1.67 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.45 6.91 -51.93 -0.36 1.09 16 35 H 0.08 1.38 7.99 -51.93 -0.41 0.97 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H -0.01 -0.31 7.18 -51.93 -0.37 -0.69 16 38 H 0.02 0.62 7.40 -51.93 -0.38 0.24 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 2.30 6.67 -51.93 -0.35 1.96 16 42 H 0.09 1.67 7.06 -51.93 -0.37 1.30 16 43 H 0.07 1.30 8.14 -51.92 -0.42 0.87 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -39.71 361.96 -10.03 -49.74 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.81 Total: -3.90 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -2.67 Total: 9.64 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -1.03 Total: -63.90 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.86 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.39 Total: -1.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -39.71 -10.03 -49.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602931156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.159 kcal (2) G-P(sol) polarization free energy of solvation -39.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds