Wall clock time and date at job start Tue Mar 31 2020 21:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.35591 * 119.66739 * 2 1 4 4 H 0.96998 * 119.27334 * 359.97438 * 3 2 1 5 5 C 1.35505 * 121.45210 * 179.97438 * 3 2 1 6 6 C 1.35250 * 120.71284 * 0.02562 * 5 3 2 7 7 C 1.41302 * 119.27525 * 0.02562 * 6 5 3 8 8 N 1.34363 * 120.67191 * 179.97438 * 7 6 5 9 9 C 1.33214 * 119.99842 * 5.34888 * 8 7 6 10 10 O 1.21939 * 119.99866 * 55.46813 * 9 8 7 11 11 N 1.34776 * 120.00172 * 235.46248 * 9 8 7 12 12 C 1.47076 * 120.87876 * 0.03194 * 11 9 8 13 13 C 1.53246 * 108.51831 * 231.16029 * 12 11 9 14 14 N 1.46896 * 109.33942 * 306.16591 * 13 12 11 15 15 C 1.46896 * 111.00037 * 187.25652 * 14 13 12 16 16 C 1.50703 * 109.46968 * 170.00625 * 15 14 13 17 17 H 1.07997 * 120.00440 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99781 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00134 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00190 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.47262 * 90.00415 * 20 18 16 22 22 H 1.48505 * 109.47443 * 210.00292 * 20 18 16 23 23 H 1.48503 * 109.47367 * 330.00421 * 20 18 16 24 24 C 1.46905 * 111.26812 * 63.10594 * 14 13 12 25 25 C 1.47076 * 120.88420 * 180.02562 * 11 9 8 26 26 C 1.35320 * 119.66434 * 180.28133 * 2 1 3 27 27 Cl 1.73596 * 120.38352 * 359.97438 * 26 2 1 28 28 H 1.09005 * 109.46735 * 90.00095 * 1 2 3 29 29 H 1.08994 * 109.47325 * 210.00153 * 1 2 3 30 30 H 1.08998 * 109.47097 * 330.00582 * 1 2 3 31 31 H 1.08007 * 119.64320 * 180.02562 * 5 3 2 32 32 H 1.08001 * 120.35889 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.63469 * 111.45265 * 12 11 9 34 34 H 1.09004 * 109.63458 * 350.86482 * 12 11 9 35 35 H 1.09005 * 109.49025 * 186.20987 * 13 12 11 36 36 H 1.08999 * 109.49157 * 66.12932 * 13 12 11 37 37 H 1.09002 * 109.46887 * 289.99774 * 15 14 13 38 38 H 1.08996 * 109.47508 * 50.00102 * 15 14 13 39 39 H 0.97000 * 119.99990 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.49088 * 56.85611 * 24 14 13 41 41 H 1.08998 * 109.49406 * 176.90711 * 24 14 13 42 42 H 1.09006 * 109.62962 * 9.13115 * 25 11 9 43 43 H 1.09008 * 109.63079 * 248.55144 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1781 1.1782 0.0000 4 1 1.6777 2.0091 -0.0004 5 6 3.5325 1.2204 0.0005 6 6 4.2591 0.0796 0.0005 7 6 3.5908 -1.1653 -0.0006 8 7 4.2849 -2.3158 -0.0011 9 6 5.6124 -2.2929 0.1070 10 8 6.1376 -1.7270 1.0508 11 7 6.3751 -2.8951 -0.8269 12 6 5.7621 -3.5827 -1.9735 13 6 6.3549 -4.9926 -2.0694 14 7 7.8206 -4.9023 -2.1103 15 6 8.4218 -6.2162 -2.3748 16 6 9.8934 -6.0485 -2.6527 17 1 10.3376 -5.0642 -2.6351 18 6 10.6726 -7.1515 -2.9305 19 7 11.9568 -7.0052 -3.1735 20 14 9.9043 -8.8539 -2.9616 21 1 9.4255 -9.1559 -4.3346 22 1 10.9174 -9.8618 -2.5579 23 1 8.7590 -8.8976 -2.0173 24 6 8.3534 -4.3191 -0.8717 25 6 7.8424 -2.8822 -0.7265 26 6 2.1767 -1.1758 -0.0058 27 17 1.3100 -2.6799 -0.0125 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 4.0372 2.1753 0.0009 32 1 5.3384 0.1200 0.0014 33 1 5.9778 -3.0318 -2.8890 34 1 4.6838 -3.6481 -1.8276 35 1 5.9949 -5.4776 -2.9767 36 1 6.0505 -5.5750 -1.1998 37 1 8.2873 -6.8590 -1.5048 38 1 7.9380 -6.6697 -3.2398 39 1 12.5050 -7.7813 -3.3686 40 1 8.0212 -4.9110 -0.0188 41 1 9.4427 -4.3162 -0.9103 42 1 8.1395 -2.4843 0.2439 43 1 8.2584 -2.2637 -1.5219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602931156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:45 Heat of formation + Delta-G solvation = 13.432576 kcal Electronic energy + Delta-G solvation = -26745.318383 eV Core-core repulsion = 22851.585810 eV Total energy + Delta-G solvation = -3893.732573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.04966 -41.02103 -39.17147 -37.51072 -36.21757 -35.80900 -34.40160 -33.89630 -32.43076 -31.57739 -30.32841 -28.88755 -27.27159 -25.13030 -24.32786 -24.05850 -23.24739 -21.78957 -20.03019 -19.82000 -19.02077 -18.63311 -17.83445 -17.56761 -16.55302 -16.47685 -16.23625 -16.14523 -16.07036 -15.72785 -15.36103 -15.17542 -14.86297 -14.52777 -14.43142 -14.06892 -13.68346 -13.60727 -13.49167 -13.25921 -13.20769 -13.05754 -12.88449 -12.55120 -12.36487 -12.28383 -12.15729 -11.88668 -11.87130 -11.63267 -11.61251 -11.45238 -10.79284 -10.28029 -10.20308 -9.68925 -9.12129 -8.61397 -8.29604 -6.33014 -0.18194 0.08122 1.13539 1.33040 1.34992 1.45782 1.75371 1.95402 2.01514 2.33154 2.62738 3.01739 3.11937 3.26787 3.60367 3.86041 3.94961 3.98475 4.01361 4.14064 4.22072 4.34086 4.35108 4.40944 4.56030 4.59404 4.69170 4.74149 4.78774 4.80966 4.88581 4.93122 4.97527 5.06467 5.16130 5.32526 5.48532 5.58112 5.62872 5.91659 6.11286 6.21803 6.44062 6.57998 6.72063 6.84911 7.30179 7.65992 8.86698 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023662 B = 0.002481 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.062317 B =11283.556877 C =12087.088184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.208 3.792 3 N -0.545 5.545 4 H 0.454 0.546 5 C 0.187 3.813 6 C -0.285 4.285 7 C 0.310 3.690 8 N -0.665 5.665 9 C 0.674 3.326 10 O -0.646 6.646 11 N -0.612 5.612 12 C 0.136 3.864 13 C 0.040 3.960 14 N -0.535 5.535 15 C 0.172 3.828 16 C -0.516 4.516 17 H 0.042 0.958 18 C 0.010 3.990 19 N -0.945 5.945 20 Si 0.947 3.053 21 H -0.259 1.259 22 H -0.281 1.281 23 H -0.259 1.259 24 C 0.059 3.941 25 C 0.137 3.863 26 C -0.160 4.160 27 Cl -0.040 7.040 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.228 0.772 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.016 0.984 37 H -0.020 1.020 38 H 0.036 0.964 39 H 0.268 0.732 40 H 0.010 0.990 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.937 24.182 4.826 41.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.091 3.909 3 N -0.151 5.151 4 H 0.298 0.702 5 C 0.054 3.946 6 C -0.313 4.313 7 C 0.154 3.846 8 N -0.406 5.406 9 C 0.377 3.623 10 O -0.530 6.530 11 N -0.347 5.347 12 C 0.013 3.987 13 C -0.089 4.089 14 N -0.259 5.259 15 C 0.045 3.955 16 C -0.555 4.555 17 H 0.060 0.940 18 C -0.188 4.188 19 N -0.585 5.585 20 Si 0.770 3.230 21 H -0.184 1.184 22 H -0.206 1.206 23 H -0.183 1.183 24 C -0.070 4.070 25 C 0.013 3.987 26 C -0.196 4.196 27 Cl -0.011 7.011 28 H 0.135 0.865 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.244 0.756 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.035 0.965 37 H -0.002 1.002 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.028 0.972 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -32.453 23.639 4.843 40.441 hybrid contribution 0.970 -1.377 0.787 1.859 sum -31.484 22.262 5.630 38.968 Atomic orbital electron populations 1.21375 0.83564 1.07105 1.06651 1.20495 0.96776 0.83748 0.89839 1.41280 1.05961 1.08993 1.58892 0.70208 1.22437 0.82254 1.01094 0.88770 1.21635 1.01571 0.92328 1.15758 1.18978 0.92297 0.89219 0.84079 1.68570 1.05206 1.26956 1.39916 1.17455 0.85802 0.77265 0.81773 1.90845 1.76666 1.50366 1.35119 1.47787 1.06201 1.56542 1.24157 1.21646 0.98109 0.91006 0.87922 1.22553 0.88085 0.97236 1.00990 1.61848 1.04810 1.25154 1.34129 1.19957 0.94240 0.86547 0.94729 1.21211 0.92699 0.94391 1.47166 0.93968 1.25809 0.95127 1.03465 0.94357 1.70040 1.06890 1.31920 1.49694 0.85727 0.78672 0.78892 0.79709 1.18411 1.20606 1.18325 1.22237 1.00402 0.94605 0.89760 1.21491 0.79080 0.95787 1.02316 1.19687 0.89490 0.88908 1.21467 1.98348 1.74395 1.31105 1.97281 0.86497 0.89054 0.86000 0.75576 0.85610 0.90626 0.88093 0.88365 0.96530 1.00243 0.94557 0.92344 0.97210 0.90497 0.90058 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.26 9.66 71.24 0.69 0.95 16 2 C 0.21 1.17 6.81 41.30 0.28 1.45 16 3 N -0.55 0.47 5.24 -183.27 -0.96 -0.49 16 4 H 0.45 -5.12 8.77 -92.71 -0.81 -5.93 16 5 C 0.19 0.90 11.17 83.44 0.93 1.83 16 6 C -0.29 -5.77 8.92 22.33 0.20 -5.57 16 7 C 0.31 8.17 6.56 40.29 0.26 8.43 16 8 N -0.67 -23.81 8.52 -319.03 -2.72 -26.53 16 9 C 0.67 27.68 6.81 179.54 1.22 28.90 16 10 O -0.65 -29.89 15.05 -5.12 -0.08 -29.97 16 11 N -0.61 -24.16 3.01 -837.10 -2.52 -26.68 16 12 C 0.14 4.76 6.59 86.35 0.57 5.33 16 13 C 0.04 1.56 5.62 86.39 0.49 2.04 16 14 N -0.53 -24.76 4.62 -899.88 -4.16 -28.91 16 15 C 0.17 8.91 3.79 85.56 0.32 9.24 16 16 C -0.52 -31.22 8.96 25.60 0.23 -30.99 16 17 H 0.04 2.81 7.37 -2.91 -0.02 2.79 16 18 C 0.01 0.60 5.47 84.65 0.46 1.07 16 19 N -0.94 -60.61 13.96 21.45 0.30 -60.31 16 20 Si 0.95 46.02 27.47 68.60 1.88 47.90 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 24 C 0.06 2.71 5.46 86.37 0.47 3.18 16 25 C 0.14 5.58 6.60 86.34 0.57 6.15 16 26 C -0.16 -2.85 6.32 22.38 0.14 -2.71 16 27 Cl -0.04 -0.80 26.80 -2.72 -0.07 -0.87 16 28 H 0.12 -0.51 8.14 -2.38 -0.02 -0.53 16 29 H 0.09 0.15 6.84 -2.39 -0.02 0.13 16 30 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 31 H 0.23 -1.18 8.06 -2.91 -0.02 -1.20 16 32 H 0.13 3.42 6.41 -2.91 -0.02 3.40 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.10 3.35 6.91 -2.38 -0.02 3.34 16 35 H 0.10 3.38 7.99 -2.38 -0.02 3.36 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H -0.02 -1.07 7.18 -2.39 -0.02 -1.09 16 38 H 0.04 1.80 7.40 -2.39 -0.02 1.78 16 39 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.08 3.83 6.67 -2.39 -0.02 3.81 16 42 H 0.08 3.38 7.06 -2.38 -0.02 3.36 16 43 H 0.08 3.00 8.14 -2.38 -0.02 2.98 16 Total: -1.00 -96.73 361.96 -1.30 -98.02 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: 0.18 Total: -1.45 kcal Atomic # 6 Polarization: 22.46 SS G_CDS: 6.84 Total: 29.30 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -10.06 Total: -142.94 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.08 Total: -29.97 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.88 Total: 47.90 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.07 Total: -0.87 kcal Total: -96.73 -1.30 -98.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602931156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.457 kcal (2) G-P(sol) polarization free energy of solvation -96.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds