Wall clock time and date at job start Tue Mar 31 2020 20:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48503 * 109.46963 * 272.94794 * 3 2 1 5 5 H 1.48501 * 109.46930 * 32.94206 * 3 2 1 6 6 H 1.48501 * 109.47554 * 152.94536 * 3 2 1 7 7 C 1.38818 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99357 * 339.34278 * 7 2 1 9 9 N 1.36933 * 120.00168 * 159.34205 * 7 2 1 10 10 C 1.46921 * 120.63183 * 332.63178 * 9 7 2 11 11 C 1.53193 * 108.77592 * 233.58498 * 10 9 7 12 12 C 1.53040 * 109.31281 * 305.36598 * 11 10 9 13 13 N 1.46501 * 109.46057 * 181.38531 * 12 11 10 14 14 C 1.34769 * 120.00156 * 154.97627 * 13 12 11 15 15 O 1.21590 * 119.99788 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00133 * 180.02562 * 14 13 12 17 17 N 1.40098 * 120.00167 * 0.26526 * 16 14 13 18 18 C 1.39749 * 120.00529 * 179.72643 * 17 16 14 19 19 C 1.38886 * 120.07189 * 0.02562 * 18 17 16 20 20 C 1.38115 * 119.93597 * 180.02562 * 19 18 17 21 21 C 1.38300 * 120.09182 * 0.02562 * 20 19 18 22 22 C 1.38271 * 120.15859 * 359.97438 * 21 20 19 23 23 C 1.38212 * 120.05864 * 359.72559 * 22 21 20 24 24 Cl 1.73603 * 120.04645 * 180.29773 * 23 22 21 25 25 C 1.53043 * 109.52672 * 61.36744 * 12 11 10 26 26 C 1.46927 * 120.63045 * 152.60399 * 9 7 2 27 27 H 0.96995 * 120.00074 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.59075 * 113.79582 * 10 9 7 29 29 H 1.09007 * 109.70395 * 353.44166 * 10 9 7 30 30 H 1.08995 * 109.49929 * 185.41265 * 11 10 9 31 31 H 1.09004 * 109.52494 * 65.32835 * 11 10 9 32 32 H 1.08999 * 109.45694 * 301.35304 * 12 11 10 33 33 H 0.96997 * 119.99780 * 334.96707 * 13 12 11 34 34 H 0.96999 * 119.99997 * 179.97438 * 16 14 13 35 35 H 0.96999 * 119.99781 * 359.73113 * 17 16 14 36 36 H 1.07996 * 120.03637 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.95762 * 179.97438 * 20 19 18 38 38 H 1.08005 * 119.91799 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.96700 * 180.02562 * 22 21 20 40 40 H 1.09006 * 109.49538 * 58.58389 * 25 12 11 41 41 H 1.09001 * 109.49486 * 178.67402 * 25 12 11 42 42 H 1.08994 * 109.59164 * 246.20336 * 26 9 7 43 43 H 1.09003 * 109.58239 * 6.48521 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4353 2.0824 -1.3983 5 1 1.4801 2.6339 0.7614 6 1 3.5775 1.4231 0.6368 7 6 2.0103 -1.2022 -0.0005 8 1 1.5224 -2.1075 0.3290 9 7 3.3136 -1.2400 -0.4189 10 6 3.8173 -0.2583 -1.3890 11 6 4.4622 -1.0076 -2.5592 12 6 5.5290 -1.9641 -2.0215 13 7 6.1708 -2.6584 -3.1405 14 6 7.4214 -3.1422 -3.0053 15 8 8.0171 -3.0022 -1.9546 16 7 8.0121 -3.7805 -4.0350 17 7 7.3282 -3.9360 -5.2478 18 6 7.9428 -4.5927 -6.3173 19 6 9.2313 -5.0923 -6.1795 20 6 9.8363 -5.7404 -7.2386 21 6 9.1608 -5.8920 -8.4359 22 6 7.8779 -5.3961 -8.5773 23 6 7.2641 -4.7520 -7.5197 24 17 5.6504 -4.1363 -7.6952 25 6 4.8750 -2.9898 -1.0927 26 6 4.2351 -2.2629 0.0943 27 1 -0.4850 0.8400 0.0004 28 1 4.5597 0.3805 -0.9106 29 1 2.9922 0.3521 -1.7562 30 1 4.9246 -0.2919 -3.2389 31 1 3.6999 -1.5757 -3.0925 32 1 6.2780 -1.3982 -1.4676 33 1 5.6957 -2.7698 -3.9788 34 1 8.9123 -4.1284 -3.9377 35 1 6.4282 -3.5878 -5.3451 36 1 9.7602 -4.9734 -5.2454 37 1 10.8384 -6.1287 -7.1319 38 1 9.6367 -6.3989 -9.2624 39 1 7.3532 -5.5166 -9.5135 40 1 4.1084 -3.5390 -1.6395 41 1 5.6313 -3.6851 -0.7286 42 1 5.0116 -1.7876 0.6936 43 1 3.6846 -2.9757 0.7082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730674051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:55 Heat of formation + Delta-G solvation = 62.574245 kcal Electronic energy + Delta-G solvation = -26579.903758 eV Core-core repulsion = 22688.302128 eV Total energy + Delta-G solvation = -3891.601631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.67966 -39.69737 -37.89006 -36.83193 -36.51982 -34.67684 -32.55224 -31.92124 -31.19199 -30.47353 -29.92663 -28.38424 -25.12446 -23.53539 -22.98292 -22.65147 -22.09832 -20.81978 -19.93647 -18.89495 -18.86033 -17.02339 -16.79189 -16.42542 -15.85085 -15.63868 -15.43481 -14.89583 -14.62558 -14.39413 -14.28237 -14.18794 -14.08810 -13.83002 -13.24223 -12.98658 -12.49713 -12.43755 -12.35044 -12.02766 -11.83846 -11.82686 -11.76861 -11.30543 -11.06962 -10.86094 -10.60818 -10.54498 -10.33371 -10.12085 -9.82273 -9.77699 -9.49609 -9.28371 -8.97058 -8.65918 -7.69455 -7.02058 -5.97003 -3.33090 0.74736 0.97060 1.53203 1.79931 2.87970 2.96038 3.26186 3.29328 3.47640 3.50662 4.21700 4.30384 4.50768 4.55087 4.86090 4.91530 4.92074 5.03134 5.14663 5.28982 5.35452 5.36256 5.54548 5.60539 5.77532 5.77829 5.93301 5.98583 6.00711 6.05320 6.12556 6.26270 6.30889 6.35160 6.53408 6.58164 6.61248 6.64741 6.79009 6.92535 7.02871 7.87847 7.93543 8.30872 8.32784 8.91389 9.69518 10.06808 11.18914 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.002527 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.879816 B =11077.624499 C =11938.679104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.142 4.142 12 C 0.166 3.834 13 N -0.735 5.735 14 C 0.712 3.288 15 O -0.571 6.571 16 N -0.537 5.537 17 N -0.542 5.542 18 C 0.232 3.768 19 C -0.188 4.188 20 C -0.060 4.060 21 C -0.167 4.167 22 C -0.056 4.056 23 C -0.111 4.111 24 Cl -0.066 7.066 25 C -0.143 4.143 26 C 0.151 3.849 27 H 0.263 0.737 28 H 0.029 0.971 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.388 0.612 34 H 0.431 0.569 35 H 0.425 0.575 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.026 0.974 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.264 -11.446 -18.945 29.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.329 5.329 10 C 0.003 3.997 11 C -0.182 4.182 12 C 0.063 3.937 13 N -0.390 5.390 14 C 0.412 3.588 15 O -0.445 6.445 16 N -0.293 5.293 17 N -0.272 5.272 18 C 0.126 3.874 19 C -0.211 4.211 20 C -0.078 4.078 21 C -0.188 4.188 22 C -0.075 4.075 23 C -0.144 4.144 24 Cl -0.038 7.038 25 C -0.183 4.183 26 C 0.024 3.976 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.222 0.778 34 H 0.276 0.724 35 H 0.270 0.730 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.154 0.846 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.044 0.956 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 19.296 -11.056 -17.859 28.522 hybrid contribution 0.010 0.947 -0.561 1.101 sum 19.306 -10.109 -18.421 28.535 Atomic orbital electron populations 1.69833 1.05727 1.26573 1.52937 1.25292 0.95241 0.97577 0.99507 0.86978 0.80161 0.84694 0.77012 1.21643 1.23090 1.19441 1.18928 0.84903 0.94807 1.40157 0.89610 1.44404 1.08733 1.33312 1.46497 1.21305 0.97335 0.92035 0.88975 1.22379 0.97421 0.98409 0.99956 1.20976 0.94170 0.92775 0.85807 1.45548 1.14343 1.61313 1.17755 1.15746 0.82143 0.78548 0.82378 1.91036 1.64696 1.63677 1.25071 1.44603 1.17817 1.63795 1.03081 1.43472 1.16461 1.64138 1.03125 1.17361 0.92262 0.92505 0.85232 1.20449 0.93709 1.05977 1.01005 1.21008 0.99491 0.95234 0.92113 1.20930 0.94871 1.04397 0.98570 1.20854 0.94836 0.94768 0.97022 1.20222 0.88800 1.10223 0.95129 1.98380 1.21399 1.86566 1.97439 1.22417 0.99459 0.98033 0.98379 1.20898 0.92351 0.91357 0.92954 0.92747 0.95360 0.90414 0.92163 0.91114 0.89533 0.77828 0.72395 0.73013 0.85475 0.85178 0.85203 0.84644 0.91827 0.92095 0.95582 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.62 13.97 55.49 0.78 -26.85 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.16 24.34 -169.99 -4.14 18.02 16 4 H -0.29 -6.94 6.62 56.52 0.37 -6.57 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.27 -6.69 6.63 56.52 0.37 -6.31 16 7 C -0.26 -7.18 10.04 -15.06 -0.15 -7.33 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.61 -14.19 2.77 -172.32 -0.48 -14.66 16 10 C 0.13 2.76 4.20 -3.71 -0.02 2.74 16 11 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 12 C 0.17 2.65 2.42 -67.89 -0.16 2.49 16 13 N -0.73 -9.65 5.04 -58.63 -0.30 -9.95 16 14 C 0.71 9.80 8.64 -86.92 -0.75 9.05 16 15 O -0.57 -9.93 16.84 5.29 0.09 -9.84 16 16 N -0.54 -5.54 6.22 27.63 0.17 -5.37 16 17 N -0.54 -4.98 6.41 32.44 0.21 -4.78 16 18 C 0.23 1.99 6.72 -83.73 -0.56 1.43 16 19 C -0.19 -1.35 9.48 -39.39 -0.37 -1.72 16 20 C -0.06 -0.35 10.04 -39.60 -0.40 -0.75 16 21 C -0.17 -0.96 10.04 -39.55 -0.40 -1.36 16 22 C -0.06 -0.37 9.82 -39.58 -0.39 -0.76 16 23 C -0.11 -0.92 6.34 -39.32 -0.25 -1.17 16 24 Cl -0.07 -0.57 27.60 -51.86 -1.43 -2.00 16 25 C -0.14 -2.42 5.65 -26.61 -0.15 -2.57 16 26 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 29 H 0.08 1.80 4.50 -51.93 -0.23 1.56 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 33 H 0.39 4.27 6.52 -40.82 -0.27 4.00 16 34 H 0.43 3.75 6.71 -182.60 -1.22 2.52 16 35 H 0.43 3.83 5.38 -182.60 -0.98 2.85 16 36 H 0.13 0.75 6.20 -52.49 -0.33 0.42 16 37 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.13 0.47 8.06 -52.48 -0.42 0.04 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -32.54 357.36 -10.78 -43.32 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.20 Total: 5.65 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -3.86 Total: 1.06 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.38 Total: -61.60 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.02 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.43 Total: -2.00 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.54 -10.78 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730674051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.891 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds