Wall clock time and date at job start Tue Mar 31 2020 20:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48503 * 109.46963 * 272.94794 * 3 2 1 5 5 H 1.48501 * 109.46930 * 32.94206 * 3 2 1 6 6 H 1.48501 * 109.47554 * 152.94536 * 3 2 1 7 7 C 1.38818 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99357 * 339.34278 * 7 2 1 9 9 N 1.36933 * 120.00168 * 159.34205 * 7 2 1 10 10 C 1.46921 * 120.63183 * 332.63178 * 9 7 2 11 11 C 1.53193 * 108.77592 * 233.58498 * 10 9 7 12 12 C 1.53040 * 109.31281 * 305.36598 * 11 10 9 13 13 N 1.46501 * 109.46057 * 181.38531 * 12 11 10 14 14 C 1.34769 * 120.00156 * 154.97627 * 13 12 11 15 15 O 1.21590 * 119.99788 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00133 * 180.02562 * 14 13 12 17 17 N 1.40098 * 120.00167 * 0.26526 * 16 14 13 18 18 C 1.39749 * 120.00529 * 179.72643 * 17 16 14 19 19 C 1.38886 * 120.07189 * 0.02562 * 18 17 16 20 20 C 1.38115 * 119.93597 * 180.02562 * 19 18 17 21 21 C 1.38300 * 120.09182 * 0.02562 * 20 19 18 22 22 C 1.38271 * 120.15859 * 359.97438 * 21 20 19 23 23 C 1.38212 * 120.05864 * 359.72559 * 22 21 20 24 24 Cl 1.73603 * 120.04645 * 180.29773 * 23 22 21 25 25 C 1.53043 * 109.52672 * 61.36744 * 12 11 10 26 26 C 1.46927 * 120.63045 * 152.60399 * 9 7 2 27 27 H 0.96995 * 120.00074 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.59075 * 113.79582 * 10 9 7 29 29 H 1.09007 * 109.70395 * 353.44166 * 10 9 7 30 30 H 1.08995 * 109.49929 * 185.41265 * 11 10 9 31 31 H 1.09004 * 109.52494 * 65.32835 * 11 10 9 32 32 H 1.08999 * 109.45694 * 301.35304 * 12 11 10 33 33 H 0.96997 * 119.99780 * 334.96707 * 13 12 11 34 34 H 0.96999 * 119.99997 * 179.97438 * 16 14 13 35 35 H 0.96999 * 119.99781 * 359.73113 * 17 16 14 36 36 H 1.07996 * 120.03637 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.95762 * 179.97438 * 20 19 18 38 38 H 1.08005 * 119.91799 * 179.97438 * 21 20 19 39 39 H 1.07993 * 119.96700 * 180.02562 * 22 21 20 40 40 H 1.09006 * 109.49538 * 58.58389 * 25 12 11 41 41 H 1.09001 * 109.49486 * 178.67402 * 25 12 11 42 42 H 1.08994 * 109.59164 * 246.20336 * 26 9 7 43 43 H 1.09003 * 109.58239 * 6.48521 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4353 2.0824 -1.3983 5 1 1.4801 2.6339 0.7614 6 1 3.5775 1.4231 0.6368 7 6 2.0103 -1.2022 -0.0005 8 1 1.5224 -2.1075 0.3290 9 7 3.3136 -1.2400 -0.4189 10 6 3.8173 -0.2583 -1.3890 11 6 4.4622 -1.0076 -2.5592 12 6 5.5290 -1.9641 -2.0215 13 7 6.1708 -2.6584 -3.1405 14 6 7.4214 -3.1422 -3.0053 15 8 8.0171 -3.0022 -1.9546 16 7 8.0121 -3.7805 -4.0350 17 7 7.3282 -3.9360 -5.2478 18 6 7.9428 -4.5927 -6.3173 19 6 9.2313 -5.0923 -6.1795 20 6 9.8363 -5.7404 -7.2386 21 6 9.1608 -5.8920 -8.4359 22 6 7.8779 -5.3961 -8.5773 23 6 7.2641 -4.7520 -7.5197 24 17 5.6504 -4.1363 -7.6952 25 6 4.8750 -2.9898 -1.0927 26 6 4.2351 -2.2629 0.0943 27 1 -0.4850 0.8400 0.0004 28 1 4.5597 0.3805 -0.9106 29 1 2.9922 0.3521 -1.7562 30 1 4.9246 -0.2919 -3.2389 31 1 3.6999 -1.5757 -3.0925 32 1 6.2780 -1.3982 -1.4676 33 1 5.6957 -2.7698 -3.9788 34 1 8.9123 -4.1284 -3.9377 35 1 6.4282 -3.5878 -5.3451 36 1 9.7602 -4.9734 -5.2454 37 1 10.8384 -6.1287 -7.1319 38 1 9.6367 -6.3989 -9.2624 39 1 7.3532 -5.5166 -9.5135 40 1 4.1084 -3.5390 -1.6395 41 1 5.6313 -3.6851 -0.7286 42 1 5.0116 -1.7876 0.6936 43 1 3.6846 -2.9757 0.7082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730674051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:54 Heat of formation + Delta-G solvation = 40.950458 kcal Electronic energy + Delta-G solvation = -26580.841436 eV Core-core repulsion = 22688.302128 eV Total energy + Delta-G solvation = -3892.539308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.64303 -40.41688 -39.33902 -37.47581 -37.30647 -36.16079 -34.09601 -33.06882 -32.01158 -31.76411 -31.43039 -29.02724 -26.88289 -24.67478 -24.20628 -23.51120 -23.22022 -21.93189 -21.34016 -20.00709 -19.56521 -18.75397 -17.65746 -17.24892 -17.20094 -16.73257 -16.51106 -16.00509 -15.96131 -15.43255 -15.36690 -15.12483 -15.09680 -14.77157 -14.63115 -14.52923 -14.27160 -13.84855 -13.51359 -13.15359 -12.91355 -12.61558 -12.58787 -12.36492 -12.30830 -12.29462 -12.05080 -11.90080 -11.84189 -11.66880 -11.58910 -11.35180 -10.73190 -10.56746 -10.12966 -9.80074 -8.98074 -8.36962 -8.16631 -5.49197 0.24049 0.44411 0.76530 1.19726 1.29356 1.42908 1.51519 1.86175 1.90713 2.41216 2.75124 3.04782 3.30836 3.58314 3.69334 3.72958 3.93611 4.11490 4.17848 4.29267 4.40591 4.43507 4.45285 4.50334 4.59603 4.67410 4.82184 4.87373 4.90125 4.98057 5.02230 5.05336 5.12912 5.18304 5.34748 5.38384 5.41065 5.57777 5.78675 5.86069 5.95138 6.12471 6.28543 6.89843 6.96794 7.31873 7.60528 8.00812 9.03127 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.019361 B = 0.002527 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.879816 B =11077.624499 C =11938.679104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.034 4.034 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.312 1.312 6 H -0.263 1.263 7 C -0.249 4.249 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.122 3.878 11 C -0.129 4.129 12 C 0.177 3.823 13 N -0.726 5.726 14 C 0.713 3.287 15 O -0.609 6.609 16 N -0.522 5.522 17 N -0.545 5.545 18 C 0.212 3.788 19 C -0.196 4.196 20 C -0.060 4.060 21 C -0.162 4.162 22 C -0.064 4.064 23 C -0.123 4.123 24 Cl -0.076 7.076 25 C -0.130 4.130 26 C 0.147 3.853 27 H 0.262 0.738 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.400 0.600 34 H 0.439 0.561 35 H 0.425 0.575 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.033 0.967 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.134 -11.877 -21.173 32.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.229 4.229 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.241 1.241 6 H -0.188 1.188 7 C -0.378 4.378 8 H 0.070 0.930 9 N -0.343 5.343 10 C -0.004 4.004 11 C -0.169 4.169 12 C 0.072 3.928 13 N -0.381 5.381 14 C 0.412 3.588 15 O -0.486 6.486 16 N -0.277 5.277 17 N -0.277 5.277 18 C 0.109 3.891 19 C -0.219 4.219 20 C -0.079 4.079 21 C -0.182 4.182 22 C -0.083 4.083 23 C -0.155 4.155 24 Cl -0.048 7.048 25 C -0.170 4.170 26 C 0.022 3.978 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.236 0.764 34 H 0.286 0.714 35 H 0.269 0.731 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.173 0.827 39 H 0.167 0.833 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.051 0.949 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.234 -11.532 -20.172 32.159 hybrid contribution -0.797 0.903 0.039 1.205 sum 21.437 -10.629 -20.132 31.270 Atomic orbital electron populations 1.69960 1.07395 1.27246 1.55596 1.25898 0.95828 1.00892 1.00268 0.85949 0.78670 0.80233 0.77828 1.19540 1.24113 1.18759 1.18853 0.86603 0.93601 1.38755 0.92969 1.44505 1.07790 1.34489 1.47541 1.21372 0.96968 0.92035 0.89990 1.22189 0.97503 0.98783 0.98427 1.20644 0.93629 0.92274 0.86248 1.45193 1.14335 1.61065 1.17544 1.15725 0.81975 0.78641 0.82474 1.91014 1.65574 1.65198 1.26839 1.44279 1.17902 1.62446 1.03024 1.43441 1.16489 1.65086 1.02689 1.17560 0.93016 0.93435 0.85118 1.20717 0.93327 1.05845 1.01985 1.21370 1.00546 0.94351 0.91607 1.21301 0.94326 1.03306 0.99275 1.21135 0.95456 0.94500 0.97201 1.20413 0.88573 1.10875 0.95620 1.98373 1.22158 1.86770 1.97461 1.22237 0.99302 0.98023 0.97411 1.21010 0.91853 0.90687 0.94260 0.92917 0.94704 0.92298 0.89201 0.91021 0.90501 0.76350 0.71379 0.73071 0.84519 0.82638 0.82724 0.83307 0.92082 0.91419 0.94938 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.83 13.97 21.65 0.30 -59.53 16 2 C -0.03 -1.98 5.23 84.86 0.44 -1.54 16 3 Si 0.94 46.11 24.34 68.60 1.67 47.78 16 4 H -0.27 -12.16 6.62 99.48 0.66 -11.51 16 5 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 6 H -0.26 -12.41 6.63 99.48 0.66 -11.75 16 7 C -0.25 -14.04 10.04 84.04 0.84 -13.19 16 8 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 9 N -0.62 -28.81 2.77 -699.11 -1.94 -30.74 16 10 C 0.12 4.97 4.20 86.36 0.36 5.33 16 11 C -0.13 -4.01 5.55 30.67 0.17 -3.84 16 12 C 0.18 5.29 2.42 45.02 0.11 5.40 16 13 N -0.73 -17.58 5.04 -457.68 -2.31 -19.88 16 14 C 0.71 18.37 8.64 179.06 1.55 19.92 16 15 O -0.61 -20.38 16.84 -4.00 -0.07 -20.45 16 16 N -0.52 -9.82 6.22 -184.75 -1.15 -10.97 16 17 N -0.55 -9.10 6.41 -51.29 -0.33 -9.43 16 18 C 0.21 3.26 6.72 38.21 0.26 3.52 16 19 C -0.20 -2.35 9.48 22.40 0.21 -2.14 16 20 C -0.06 -0.51 10.04 22.26 0.22 -0.29 16 21 C -0.16 -1.35 10.04 22.29 0.22 -1.12 16 22 C -0.06 -0.71 9.82 22.27 0.22 -0.50 16 23 C -0.12 -1.83 6.34 22.44 0.14 -1.69 16 24 Cl -0.08 -1.22 27.60 -2.72 -0.08 -1.30 16 25 C -0.13 -4.25 5.65 30.67 0.17 -4.08 16 26 C 0.15 5.81 6.52 86.36 0.56 6.37 16 27 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.04 1.39 7.07 -2.39 -0.02 1.37 16 29 H 0.06 2.63 4.50 -2.38 -0.01 2.62 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.08 2.53 7.58 -2.39 -0.02 2.51 16 33 H 0.40 7.91 6.52 -92.71 -0.60 7.30 16 34 H 0.44 6.83 6.71 -213.32 -1.43 5.40 16 35 H 0.42 6.98 5.38 -213.32 -1.15 5.83 16 36 H 0.14 1.28 6.20 -2.91 -0.02 1.27 16 37 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 38 H 0.16 0.50 8.06 -2.91 -0.02 0.47 16 39 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 Total: -1.00 -71.26 357.36 -0.60 -71.86 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -2.20 Total: 20.51 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.49 Total: 12.16 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -5.42 Total: -130.56 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.07 Total: -20.45 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.67 Total: 47.78 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -71.26 -0.60 -71.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730674051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.815 kcal (2) G-P(sol) polarization free energy of solvation -71.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds