Wall clock time and date at job start Tue Mar 31 2020 20:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00236 * 2 1 4 4 H 1.48505 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46952 * 299.99261 * 3 2 1 6 6 H 1.48498 * 109.47192 * 59.99914 * 3 2 1 7 7 C 1.38954 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00072 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99786 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00000 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99928 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00152 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47067 * 179.97438 * 12 10 9 14 14 C 1.46957 * 110.99788 * 169.99809 * 13 12 10 15 15 C 1.53057 * 109.36113 * 183.19215 * 14 13 12 16 16 N 1.46958 * 109.36482 * 301.59939 * 15 14 13 17 17 C 1.46897 * 110.99903 * 183.19072 * 16 15 14 18 18 C 1.50701 * 109.46938 * 169.99733 * 17 16 15 19 19 C 1.38714 * 120.39847 * 90.00375 * 18 17 16 20 20 C 1.38566 * 118.43372 * 179.97438 * 19 18 17 21 21 C 1.38401 * 119.15292 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 119.63508 * 179.97438 * 21 20 19 23 23 N 1.31947 * 120.72693 * 0.26334 * 21 20 19 24 24 C 1.31909 * 121.70546 * 359.46963 * 23 21 20 25 25 C 1.46956 * 110.87864 * 59.32378 * 16 15 14 26 26 C 1.46958 * 111.00260 * 293.80059 * 13 12 10 27 27 H 0.97006 * 119.99217 * 0.02562 * 1 2 3 28 28 H 0.97006 * 120.00339 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.46676 * 60.00124 * 12 10 9 30 30 H 1.08995 * 109.47151 * 300.00348 * 12 10 9 31 31 H 1.08995 * 109.48740 * 63.22792 * 14 13 12 32 32 H 1.08994 * 109.48965 * 303.15899 * 14 13 12 33 33 H 1.09004 * 109.48489 * 181.63608 * 15 14 13 34 34 H 1.08994 * 109.49135 * 61.56668 * 15 14 13 35 35 H 1.09000 * 109.47008 * 50.00265 * 17 16 15 36 36 H 1.08993 * 109.47654 * 290.00123 * 17 16 15 37 37 H 1.07996 * 120.78541 * 359.97438 * 19 18 17 38 38 H 1.08008 * 120.42646 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.60687 * 180.27392 * 24 23 21 40 40 H 1.08990 * 109.49166 * 60.64844 * 25 16 15 41 41 H 1.09004 * 109.48506 * 180.71276 * 25 16 15 42 42 H 1.08994 * 109.48762 * 296.77793 * 26 13 12 43 43 H 1.09004 * 109.48760 * 56.84671 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8896 2.3963 -1.2126 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5578 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2435 -4.8630 0.0011 13 7 2.1980 -5.9796 0.0004 14 6 1.5134 -7.2578 0.2392 15 6 2.5490 -8.3826 0.3101 16 7 3.3111 -8.4232 -0.9457 17 6 4.2656 -9.5398 -0.9464 18 6 4.8486 -9.7014 -2.3266 19 6 6.0036 -9.0218 -2.6848 20 6 6.5045 -9.2007 -3.9643 21 6 5.8406 -10.0462 -4.8361 22 17 6.4568 -10.2791 -6.4422 23 7 4.7415 -10.6728 -4.4617 24 6 4.2401 -10.5293 -3.2501 25 6 3.9957 -7.1449 -1.1845 26 6 2.9602 -6.0202 -1.2555 27 1 -0.4849 0.8402 -0.0004 28 1 0.3532 -2.3906 0.0005 29 1 0.6165 -4.9208 -0.8886 30 1 0.6171 -4.9205 0.8913 31 1 0.8173 -7.4553 -0.5759 32 1 0.9665 -7.2071 1.1807 33 1 2.0411 -9.3356 0.4582 34 1 3.2287 -8.1992 1.1422 35 1 3.7518 -10.4572 -0.6593 36 1 5.0660 -9.3340 -0.2357 37 1 6.5006 -8.3685 -1.9831 38 1 7.4015 -8.6870 -4.2774 39 1 3.3408 -11.0620 -2.9782 40 1 4.6919 -6.9475 -0.3694 41 1 4.5426 -7.1957 -2.1260 42 1 2.2804 -6.2036 -2.0875 43 1 3.4680 -5.0671 -1.4036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734837065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:26 Heat of formation + Delta-G solvation = 12.991568 kcal Electronic energy + Delta-G solvation = -26282.787153 eV Core-core repulsion = 22389.035456 eV Total energy + Delta-G solvation = -3893.751697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74581 -39.33745 -37.95067 -36.95316 -35.50271 -33.87995 -32.96153 -31.92705 -31.25300 -30.76920 -28.81138 -26.38789 -24.69871 -24.29211 -23.40659 -23.28356 -21.85179 -19.74445 -19.20134 -17.87302 -17.73996 -17.06664 -16.37622 -16.05841 -15.72757 -15.01701 -14.95389 -14.73702 -14.69034 -14.55194 -14.19955 -13.91027 -13.72988 -13.59593 -13.47950 -13.35146 -12.53101 -12.25258 -12.12108 -11.94396 -11.79988 -11.60064 -11.52392 -11.35565 -11.16664 -11.09028 -10.73233 -10.71169 -10.35237 -10.23503 -10.23002 -9.93926 -9.49592 -9.21041 -8.56094 -8.40422 -7.98834 -7.84991 -6.42749 -3.83451 0.54542 0.81799 1.50952 3.15312 3.21283 3.25959 3.32830 3.84586 3.90041 3.98923 4.12830 4.23881 4.33151 4.48008 4.55122 4.66371 4.87339 4.98793 5.09549 5.18505 5.19238 5.24553 5.31993 5.39885 5.43665 5.52033 5.53790 5.62848 5.74161 5.80184 5.87330 5.90672 5.93830 6.12797 6.18153 6.27270 6.37865 6.80822 6.88437 7.28223 7.37631 7.39614 7.54419 8.05725 8.60818 9.17248 9.53724 10.05297 10.75068 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.002196 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.193057 B =12744.987018 C =14032.217760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.579 6.579 12 C 0.047 3.953 13 N -0.517 5.517 14 C 0.056 3.944 15 C 0.061 3.939 16 N -0.537 5.537 17 C 0.097 3.903 18 C -0.122 4.122 19 C -0.056 4.056 20 C -0.153 4.153 21 C 0.172 3.828 22 Cl -0.036 7.036 23 N -0.480 5.480 24 C 0.138 3.862 25 C 0.058 3.942 26 C 0.056 3.944 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.139 -21.907 -4.165 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.242 5.242 14 C -0.073 4.073 15 C -0.066 4.066 16 N -0.262 5.262 17 C -0.032 4.032 18 C -0.124 4.124 19 C -0.083 4.083 20 C -0.173 4.173 21 C 0.007 3.993 22 Cl -0.007 7.007 23 N -0.190 5.190 24 C -0.019 4.019 25 C -0.069 4.069 26 C -0.072 4.072 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.183 0.817 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.456 -22.300 -4.899 24.019 hybrid contribution 0.112 1.439 0.377 1.492 sum 7.568 -20.861 -4.522 22.648 Atomic orbital electron populations 1.69624 1.05938 1.28040 1.50691 1.25267 0.95637 0.99729 0.97381 0.85808 0.79695 0.81179 0.77709 1.19235 1.20769 1.20754 1.19734 0.93352 0.82187 1.47439 0.87884 1.41883 1.09215 1.04617 1.64388 1.19747 0.88395 0.84550 0.84349 1.90473 1.13719 1.86916 1.55235 1.21833 0.93925 0.91153 1.01553 1.61756 1.25427 1.01523 1.35501 1.22170 0.95169 0.88952 1.01013 1.22139 0.95994 0.98469 0.90040 1.62238 1.25685 1.03296 1.34983 1.20938 0.94905 0.95795 0.91515 1.20874 0.95695 0.97833 0.98022 1.21600 0.94603 0.96488 0.95564 1.21838 1.02082 0.99639 0.93791 1.21658 0.93180 0.95917 0.88509 1.98409 1.84920 1.96162 1.21229 1.67039 1.10631 1.22690 1.18638 1.22549 0.97918 0.95041 0.86441 1.22241 0.96113 0.87745 1.00824 1.22308 0.95699 0.99867 0.89307 0.91928 0.77487 0.93421 0.89348 0.94276 0.90291 0.90354 0.93670 0.89315 0.93225 0.83767 0.83642 0.81742 0.93547 0.90751 0.95174 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.22 16 10 C 0.44 10.31 7.48 -10.98 -0.08 10.23 16 11 O -0.58 -15.23 13.92 5.54 0.08 -15.15 16 12 C 0.05 0.82 5.45 -4.97 -0.03 0.80 16 13 N -0.52 -8.44 4.44 -235.90 -1.05 -9.49 16 14 C 0.06 0.69 5.61 -3.76 -0.02 0.67 16 15 C 0.06 0.64 5.61 -3.76 -0.02 0.62 16 16 N -0.54 -5.78 4.70 -235.91 -1.11 -6.89 16 17 C 0.10 0.78 5.14 -4.98 -0.03 0.76 16 18 C -0.12 -1.06 4.90 -104.48 -0.51 -1.58 16 19 C -0.06 -0.47 8.09 -39.28 -0.32 -0.79 16 20 C -0.15 -1.34 9.88 -39.40 -0.39 -1.73 16 21 C 0.17 1.80 7.27 -17.44 -0.13 1.68 16 22 Cl -0.04 -0.35 29.11 -51.86 -1.51 -1.86 16 23 N -0.48 -5.43 10.34 -10.36 -0.11 -5.54 16 24 C 0.14 1.30 10.86 -17.55 -0.19 1.11 16 25 C 0.06 0.76 5.28 -3.77 -0.02 0.74 16 26 C 0.06 0.91 5.26 -3.76 -0.02 0.89 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 29 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 30 H 0.09 1.40 8.03 -51.93 -0.42 0.99 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.56 7.98 -51.93 -0.41 0.15 16 36 H 0.05 0.39 8.07 -51.93 -0.42 -0.03 16 37 H 0.14 1.00 8.03 -52.49 -0.42 0.58 16 38 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.91 5.97 -51.93 -0.31 0.60 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.11 2.10 5.85 -51.93 -0.30 1.80 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -31.61 367.96 -10.42 -42.03 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.91 Total: 7.86 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.99 Total: 5.51 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -1.60 Total: -59.84 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.08 Total: -15.15 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.51 Total: -1.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.61 -10.42 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734837065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.021 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds