Wall clock time and date at job start Tue Mar 31 2020 20:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 119.99969 * 2 1 4 4 H 1.48501 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46926 * 299.99705 * 3 2 1 6 6 H 1.48500 * 109.47126 * 59.99451 * 3 2 1 7 7 C 1.38947 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99945 * 156.84269 * 7 2 1 9 9 N 1.37098 * 120.00382 * 336.84540 * 7 2 1 10 10 C 1.46504 * 119.99570 * 342.73649 * 9 7 2 11 11 C 1.50693 * 109.47390 * 96.01686 * 10 9 7 12 12 O 1.20834 * 119.99950 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00349 * 179.97438 * 11 10 9 14 14 C 1.34778 * 120.00278 * 162.45300 * 9 7 2 15 15 O 1.21290 * 120.00155 * 0.02562 * 14 9 7 16 16 C 1.50701 * 119.99880 * 180.02562 * 14 9 7 17 17 N 1.46499 * 109.47116 * 180.02562 * 16 14 9 18 18 C 1.34336 * 122.84155 * 269.71224 * 17 16 14 19 19 O 1.21227 * 125.94976 * 357.03563 * 18 17 16 20 20 C 1.50690 * 108.08924 * 176.90858 * 18 17 16 21 21 H 1.09001 * 105.82399 * 256.30937 * 20 18 17 22 22 C 1.49433 * 113.20216 * 140.29246 * 20 18 17 23 23 C 1.52514 * 113.30117 * 267.15522 * 22 20 18 24 24 C 1.53452 * 107.59422 * 305.23618 * 23 22 20 25 25 C 1.51419 * 108.63599 * 67.96936 * 24 23 22 26 26 C 1.51221 * 105.06227 * 8.15250 * 20 18 17 27 27 H 1.09002 * 109.81556 * 233.91228 * 26 20 18 28 28 C 1.34043 * 122.84070 * 89.99978 * 17 16 14 29 29 O 1.21218 * 125.59679 * 356.78602 * 28 17 16 30 30 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46946 * 216.01748 * 10 9 7 32 32 H 1.08998 * 109.46985 * 336.01643 * 10 9 7 33 33 H 0.96701 * 117.00268 * 180.02562 * 13 11 10 34 34 H 1.09003 * 109.47227 * 300.00580 * 16 14 9 35 35 H 1.09000 * 109.47308 * 60.00379 * 16 14 9 36 36 H 1.09003 * 108.71601 * 28.13667 * 22 20 18 37 37 H 1.08993 * 108.71751 * 146.16213 * 22 20 18 38 38 H 1.09006 * 109.84019 * 64.76086 * 23 22 20 39 39 H 1.09000 * 109.83929 * 185.65144 * 23 22 20 40 40 H 1.09007 * 109.75624 * 188.16888 * 24 23 22 41 41 H 1.09001 * 109.75625 * 308.91152 * 24 23 22 42 42 H 1.08997 * 109.78087 * 180.92795 * 25 24 23 43 43 H 1.08992 * 107.32724 * 62.97430 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0237 -1.2411 -0.3673 9 7 1.4063 -2.3426 0.4679 10 6 0.2055 -2.2469 1.3017 11 6 -1.0194 -2.4103 0.4392 12 8 -0.9014 -2.5890 -0.7500 13 8 -2.2414 -2.3584 0.9921 14 6 1.9153 -3.5509 0.1556 15 8 2.9067 -3.6303 -0.5386 16 6 1.2525 -4.8032 0.6689 17 7 1.9911 -5.9761 0.1945 18 6 1.7061 -6.5979 -0.9617 19 8 0.8003 -6.3165 -1.7167 20 6 2.7106 -7.7039 -1.1581 21 1 3.4117 -7.3389 -1.9086 22 6 2.1097 -8.9523 -1.7181 23 6 1.6766 -9.9469 -0.6460 24 6 2.8928 -10.2249 0.2474 25 6 3.2199 -8.9672 1.0245 26 6 3.4853 -7.7661 0.1391 27 1 4.5532 -7.6858 -0.0641 28 6 3.0047 -6.5231 0.8801 29 8 3.4638 -6.0994 1.9190 30 1 -0.4850 0.8400 -0.0004 31 1 0.2247 -3.0317 2.0579 32 1 0.1788 -1.2726 1.7898 33 1 -2.9969 -2.4690 0.3987 34 1 1.2498 -4.7923 1.7588 35 1 0.2265 -4.8473 0.3035 36 1 1.2399 -8.6834 -2.3176 37 1 2.8426 -9.4332 -2.3658 38 1 0.8697 -9.5204 -0.0500 39 1 1.3410 -10.8724 -1.1139 40 1 2.6657 -11.0385 0.9363 41 1 3.7501 -10.4928 -0.3703 42 1 4.0928 -9.1392 1.6542 43 1 2.3651 -8.7496 1.6647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:13 Heat of formation + Delta-G solvation = -204.052249 kcal Electronic energy + Delta-G solvation = -31154.828651 eV Core-core repulsion = 26778.663312 eV Total energy + Delta-G solvation = -4376.165339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.44119 -41.30711 -40.06161 -39.81053 -38.53739 -37.22663 -36.73817 -36.38971 -34.01270 -33.05941 -32.34232 -29.89204 -29.30627 -26.61252 -26.20389 -24.09020 -23.44736 -22.97783 -21.81332 -20.69787 -19.97703 -19.19364 -18.90491 -18.65955 -18.08034 -17.68040 -17.59384 -17.33507 -16.69475 -16.38292 -16.27626 -15.84917 -15.75446 -15.68481 -15.62379 -15.39721 -14.52287 -14.50489 -14.10488 -13.92465 -13.85428 -13.66755 -13.55271 -13.50039 -13.30372 -12.94898 -12.77261 -12.49965 -12.36814 -12.21157 -12.15981 -11.72910 -11.66590 -11.61786 -11.47645 -11.18549 -11.09527 -11.05826 -10.92907 -10.46352 -9.99898 -8.53931 -6.06402 0.41182 1.22301 1.28529 1.39552 1.54128 1.57185 1.62890 1.70813 2.19071 2.43290 2.78390 2.89855 2.95995 3.02037 3.33949 3.58205 3.66437 3.81766 3.94360 4.04284 4.11087 4.15521 4.22124 4.25021 4.36456 4.49650 4.54998 4.60442 4.79799 4.80466 4.98420 5.04125 5.14162 5.25108 5.34282 5.36891 5.39163 5.54085 5.70021 5.84451 5.88253 6.21698 6.23854 6.62664 6.95560 7.14354 7.34831 7.71687 8.53187 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.003656 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.243480 B = 7655.950144 C = 8262.166868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.005 3.995 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.348 4.348 8 H 0.078 0.922 9 N -0.433 5.433 10 C 0.136 3.864 11 C 0.493 3.507 12 O -0.545 6.545 13 O -0.515 6.515 14 C 0.434 3.566 15 O -0.615 6.615 16 C 0.091 3.909 17 N -0.564 5.564 18 C 0.525 3.475 19 O -0.515 6.515 20 C -0.104 4.104 21 H 0.122 0.878 22 C -0.099 4.099 23 C -0.122 4.122 24 C -0.108 4.108 25 C -0.101 4.101 26 C -0.086 4.086 27 H 0.145 0.855 28 C 0.524 3.476 29 O -0.509 6.509 30 H 0.278 0.722 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.415 0.585 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -19.225 4.931 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.198 4.198 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.180 1.180 7 C -0.475 4.475 8 H 0.096 0.904 9 N -0.152 5.152 10 C 0.010 3.990 11 C 0.334 3.666 12 O -0.434 6.434 13 O -0.327 6.327 14 C 0.223 3.777 15 O -0.501 6.501 16 C -0.035 4.035 17 N -0.305 5.305 18 C 0.316 3.684 19 O -0.388 6.388 20 C -0.125 4.125 21 H 0.140 0.860 22 C -0.136 4.136 23 C -0.159 4.159 24 C -0.145 4.145 25 C -0.139 4.139 26 C -0.107 4.107 27 H 0.163 0.837 28 C 0.315 3.685 29 O -0.382 6.382 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.275 0.725 34 H 0.152 0.848 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.101 -18.689 4.700 19.303 hybrid contribution -0.636 1.917 -0.839 2.187 sum 0.465 -16.772 3.861 17.217 Atomic orbital electron populations 1.69910 1.06912 1.29051 1.46423 1.26034 0.96126 1.02469 0.95194 0.84873 0.78254 0.76615 0.78449 1.19795 1.20820 1.17998 1.19633 0.98182 0.85354 1.44321 0.90445 1.43569 1.23073 1.04829 1.43733 1.20934 0.80287 1.06526 0.91207 1.23752 0.85006 0.70093 0.87703 1.90658 1.87210 1.46670 1.18818 1.84431 1.16579 1.85298 1.46436 1.20854 0.87443 0.85496 0.83955 1.90469 1.29785 1.86898 1.42936 1.21471 0.96283 0.83315 1.02409 1.46721 1.33329 1.27200 1.23242 1.21684 0.84423 0.83850 0.78434 1.90741 1.32700 1.68749 1.46640 1.20665 0.96023 0.96044 0.99808 0.86047 1.20615 1.01910 0.92047 0.99063 1.21617 0.97979 0.99308 0.96992 1.21327 0.98488 0.95760 0.98968 1.20861 1.03289 0.92519 0.97223 1.21449 1.03669 0.92580 0.92958 0.83693 1.22059 0.77095 0.85572 0.83818 1.90708 1.57447 1.66783 1.23285 0.91217 0.85889 0.85646 0.72523 0.84843 0.87723 0.91858 0.87302 0.93448 0.88834 0.89318 0.89330 0.88593 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.50 9.36 21.66 0.20 -46.29 16 2 C 0.00 0.24 4.82 84.93 0.41 0.65 16 3 Si 1.00 42.39 29.61 68.60 2.03 44.43 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.35 -20.13 9.31 84.04 0.78 -19.35 16 8 H 0.08 4.85 7.40 -2.91 -0.02 4.83 16 9 N -0.43 -22.95 2.18 -639.60 -1.40 -24.34 16 10 C 0.14 5.89 4.97 85.63 0.43 6.31 16 11 C 0.49 21.85 5.83 71.23 0.42 22.26 16 12 O -0.54 -29.58 16.70 21.94 0.37 -29.22 16 13 O -0.52 -17.53 13.42 -51.43 -0.69 -18.22 16 14 C 0.43 22.86 7.47 87.66 0.65 23.51 16 15 O -0.61 -36.95 16.08 -3.06 -0.05 -37.00 16 16 C 0.09 3.73 4.67 85.63 0.40 4.13 16 17 N -0.56 -20.99 2.06 -759.12 -1.56 -22.55 16 18 C 0.52 18.67 7.61 87.72 0.67 19.34 16 19 O -0.51 -22.38 16.95 -2.87 -0.05 -22.43 16 20 C -0.10 -2.37 2.62 -13.26 -0.03 -2.41 16 21 H 0.12 2.59 8.06 -2.39 -0.02 2.57 16 22 C -0.10 -1.60 5.36 29.29 0.16 -1.44 16 23 C -0.12 -1.52 6.07 30.58 0.19 -1.34 16 24 C -0.11 -1.01 5.92 30.23 0.18 -0.84 16 25 C -0.10 -1.48 5.27 29.60 0.16 -1.33 16 26 C -0.09 -1.77 3.30 -12.02 -0.04 -1.81 16 27 H 0.15 2.37 8.14 -2.39 -0.02 2.36 16 28 C 0.52 17.11 7.02 88.35 0.62 17.73 16 29 O -0.51 -19.34 17.53 -2.84 -0.05 -19.39 16 30 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.12 4.11 6.70 -2.39 -0.02 4.09 16 32 H 0.13 5.54 6.47 -2.39 -0.02 5.52 16 33 H 0.42 10.72 9.10 -74.06 -0.67 10.04 16 34 H 0.13 4.60 7.16 -2.39 -0.02 4.58 16 35 H 0.10 4.32 7.18 -2.39 -0.02 4.30 16 36 H 0.06 1.30 7.44 -2.39 -0.02 1.28 16 37 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 0.76 8.12 -2.38 -0.02 0.74 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.09 0.56 8.10 -2.39 -0.02 0.54 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 0.88 7.67 -2.39 -0.02 0.86 16 Total: -1.00 -87.26 357.87 4.18 -83.08 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.40 Total: 26.51 kcal Atomic # 6 Polarization: 60.45 SS G_CDS: 4.98 Total: 65.43 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -2.76 Total: -93.19 kcal Atomic # 8 Polarization: -125.79 SS G_CDS: -0.47 Total: -126.26 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.43 kcal Total: -87.26 4.18 -83.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.970 kcal (2) G-P(sol) polarization free energy of solvation -87.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds