Wall clock time and date at job start Tue Mar 31 2020 20:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99702 * 2 1 4 4 H 1.48503 * 109.47078 * 240.00310 * 3 2 1 5 5 H 1.48504 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47084 * 119.99862 * 3 2 1 7 7 C 1.37869 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99830 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00008 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47137 * 180.02562 * 9 7 2 11 11 N 1.39915 * 125.80488 * 89.97198 * 10 9 7 12 12 C 1.30462 * 109.21522 * 180.02562 * 11 10 9 13 13 C 1.41081 * 108.30369 * 0.02562 * 12 11 10 14 14 C 1.47176 * 126.48117 * 179.97438 * 13 12 11 15 15 O 1.21637 * 120.00118 * 180.02562 * 14 13 12 16 16 N 1.34774 * 120.00157 * 0.02981 * 14 13 12 17 17 N 1.40097 * 120.00464 * 180.02562 * 16 14 13 18 18 C 1.35492 * 126.98257 * 179.97438 * 17 16 14 19 19 N 1.30526 * 107.30762 * 179.75795 * 18 17 16 20 20 N 1.28594 * 109.66833 * 0.24133 * 19 18 17 21 21 C 1.30514 * 109.67912 * 0.02562 * 20 19 18 22 22 C 1.35171 * 125.80902 * 270.29375 * 10 9 7 23 23 C 1.47740 * 126.47075 * 359.95353 * 22 10 9 24 24 C 1.39617 * 120.15006 * 314.92144 * 23 22 10 25 25 C 1.37951 * 119.84676 * 179.69762 * 24 23 22 26 26 C 1.38372 * 120.14869 * 0.57642 * 25 24 23 27 27 C 1.38361 * 120.29945 * 359.71696 * 26 25 24 28 28 C 1.37950 * 120.15187 * 359.97438 * 27 26 25 29 29 H 0.97000 * 120.00133 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47266 * 59.99822 * 9 7 2 31 31 H 1.08998 * 109.47200 * 299.99705 * 9 7 2 32 32 H 1.08003 * 125.84451 * 180.02562 * 12 11 10 33 33 H 0.97007 * 120.00217 * 359.97438 * 16 14 13 34 34 H 1.08002 * 126.34907 * 0.02562 * 18 17 16 35 35 H 1.08002 * 126.35158 * 180.02562 * 21 20 19 36 36 H 1.07993 * 120.07504 * 359.97438 * 24 23 22 37 37 H 1.07994 * 119.92419 * 180.31602 * 25 24 23 38 38 H 1.07998 * 119.84511 * 179.70093 * 26 25 24 39 39 H 1.08000 * 119.92413 * 179.97438 * 27 26 25 40 40 H 1.08000 * 120.07451 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 7 2.7355 -4.2344 1.1342 12 6 3.5483 -5.1845 0.7617 13 6 3.5760 -5.2163 -0.6485 14 6 4.3624 -6.1346 -1.4877 15 8 4.2972 -6.0574 -2.6999 16 7 5.1547 -7.0612 -0.9132 17 7 5.9038 -7.9350 -1.7121 18 6 6.7406 -8.9125 -1.2877 19 7 7.2309 -9.4920 -2.3495 20 7 6.7558 -8.9333 -3.4058 21 6 5.9413 -7.9718 -3.0660 22 6 2.7214 -4.2101 -1.0967 23 6 2.4339 -3.8642 -2.5040 24 6 1.1190 -3.6399 -2.9165 25 6 0.8584 -3.3112 -4.2307 26 6 1.8953 -3.2154 -5.1419 27 6 3.2000 -3.4423 -4.7411 28 6 3.4754 -3.7656 -3.4286 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 4.1047 -5.8351 1.4202 33 1 5.2070 -7.1226 0.0535 34 1 6.9580 -9.1679 -0.2611 35 1 5.3943 -7.3283 -3.7392 36 1 0.3084 -3.7192 -2.2074 37 1 -0.1577 -3.1325 -4.5499 38 1 1.6851 -2.9625 -6.1706 39 1 4.0046 -3.3663 -5.4575 40 1 4.4943 -3.9421 -3.1171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760490627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:05 Heat of formation + Delta-G solvation = 176.254917 kcal Electronic energy + Delta-G solvation = -28410.319059 eV Core-core repulsion = 24422.539499 eV Total energy + Delta-G solvation = -3987.779561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.26251 -42.51313 -40.46421 -39.69164 -36.87247 -35.85383 -33.99145 -33.23611 -32.41154 -31.74467 -31.70787 -29.87098 -29.20433 -25.95179 -24.78130 -24.03138 -23.75837 -23.59579 -23.01742 -21.42534 -20.71255 -19.85457 -19.00861 -18.59483 -17.70538 -17.52512 -17.06329 -16.75022 -16.61338 -16.37885 -15.93782 -15.68621 -15.52689 -15.44086 -15.12477 -14.96208 -14.53120 -14.22218 -14.02712 -13.63598 -13.51076 -13.10150 -13.00249 -12.88446 -12.74934 -12.42551 -12.30606 -12.00587 -11.92890 -11.86428 -11.60875 -11.15162 -10.77685 -10.72704 -10.56974 -10.35203 -9.85599 -9.76295 -9.32810 -8.39102 -6.54059 -0.16223 0.05477 0.55220 0.63497 0.91386 1.19613 1.36692 1.36952 1.45188 1.59869 1.74358 2.21899 2.30563 2.64178 2.93753 2.94776 3.38343 3.41736 3.62543 3.78274 3.99533 4.06788 4.12843 4.16856 4.21273 4.26714 4.39212 4.53309 4.58036 4.73990 4.82295 4.89421 4.98481 5.00659 5.15383 5.43591 5.48915 5.54334 5.56610 5.60708 5.72729 5.83843 5.87682 6.04325 6.08344 6.51239 6.69241 6.91592 7.16181 7.55402 8.68740 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.003485 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.405281 B = 8031.707849 C = 9124.897207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.554 4.554 8 H 0.051 0.949 9 C 0.262 3.738 10 N -0.327 5.327 11 N -0.324 5.324 12 C 0.088 3.912 13 C -0.309 4.309 14 C 0.615 3.385 15 O -0.539 6.539 16 N -0.499 5.499 17 N -0.273 5.273 18 C 0.164 3.836 19 N -0.325 5.325 20 N -0.328 5.328 21 C 0.169 3.831 22 C 0.199 3.801 23 C -0.064 4.064 24 C -0.106 4.106 25 C -0.132 4.132 26 C -0.101 4.101 27 C -0.132 4.132 28 C -0.054 4.054 29 H 0.274 0.726 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.242 0.758 33 H 0.454 0.546 34 H 0.276 0.724 35 H 0.236 0.764 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.034 -10.982 -2.671 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.069 0.931 9 C 0.144 3.856 10 N -0.102 5.102 11 N -0.143 5.143 12 C -0.098 4.098 13 C -0.326 4.326 14 C 0.405 3.595 15 O -0.415 6.415 16 N -0.253 5.253 17 N -0.051 5.051 18 C -0.123 4.123 19 N -0.164 5.164 20 N -0.169 5.169 21 C -0.120 4.120 22 C 0.063 3.937 23 C -0.066 4.066 24 C -0.125 4.125 25 C -0.150 4.150 26 C -0.119 4.119 27 C -0.149 4.149 28 C -0.074 4.074 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.258 0.742 33 H 0.302 0.698 34 H 0.291 0.709 35 H 0.252 0.748 36 H 0.128 0.872 37 H 0.161 0.839 38 H 0.173 0.827 39 H 0.167 0.833 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.950 -11.009 -3.262 13.422 hybrid contribution -0.429 1.474 1.004 1.834 sum 6.521 -9.535 -2.258 11.770 Atomic orbital electron populations 1.69968 1.07140 1.28966 1.49053 1.25622 0.95758 1.02376 0.93578 0.85513 0.78498 0.78196 0.79022 1.19482 1.19804 1.19616 1.21300 0.93113 0.90774 1.54006 0.93106 1.19593 0.86310 0.80680 0.99047 1.49394 1.32914 1.25471 1.02417 1.77152 1.15912 1.11829 1.09378 1.24656 0.96297 0.95988 0.92887 1.19329 1.13014 1.06538 0.93731 1.17189 0.77083 0.78063 0.87121 1.90739 1.65534 1.70796 1.14447 1.44893 1.42923 1.30058 1.07416 1.45599 1.31235 1.23158 1.05058 1.27590 0.92363 0.88238 1.04153 1.74287 1.22939 1.23778 0.95416 1.74398 1.12321 1.08791 1.21361 1.27458 1.01433 1.00825 0.82240 1.20164 0.92936 0.91955 0.88691 1.18056 0.94791 1.04734 0.89031 1.21310 0.95079 0.98745 0.97351 1.21275 1.00922 1.00385 0.92429 1.21613 0.92219 0.97365 1.00704 1.21348 0.97955 1.00195 0.95436 1.21129 0.97929 0.95148 0.93165 0.91684 0.92331 0.94793 0.74187 0.69773 0.70872 0.74801 0.87239 0.83912 0.82719 0.83277 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.40 13.29 21.45 0.28 -49.12 16 2 C 0.03 1.49 5.46 84.65 0.46 1.95 16 3 Si 0.96 41.44 29.54 68.60 2.03 43.47 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.55 -29.29 9.39 25.60 0.24 -29.05 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.26 12.74 5.95 85.63 0.51 13.25 16 10 N -0.33 -13.69 3.59 -338.02 -1.21 -14.91 16 11 N -0.32 -11.96 12.48 -56.41 -0.70 -12.66 16 12 C 0.09 2.24 11.48 85.59 0.98 3.22 16 13 C -0.31 -8.88 6.13 -19.95 -0.12 -9.01 16 14 C 0.61 15.04 7.77 86.59 0.67 15.71 16 15 O -0.54 -15.68 10.19 -4.15 -0.04 -15.72 16 16 N -0.50 -7.99 6.48 -176.06 -1.14 -9.14 16 17 N -0.27 -5.28 3.87 -201.91 -0.78 -6.06 16 18 C 0.16 2.65 13.00 180.11 2.34 4.99 16 19 N -0.32 -8.24 12.21 -59.99 -0.73 -8.98 16 20 N -0.33 -9.48 12.21 -59.99 -0.73 -10.21 16 21 C 0.17 4.27 11.64 180.11 2.10 6.37 16 22 C 0.20 7.37 6.50 41.43 0.27 7.64 16 23 C -0.06 -2.32 5.25 -20.10 -0.11 -2.43 16 24 C -0.11 -3.73 8.52 22.53 0.19 -3.53 16 25 C -0.13 -3.85 10.03 22.23 0.22 -3.62 16 26 C -0.10 -2.55 10.04 22.33 0.22 -2.33 16 27 C -0.13 -3.54 10.03 22.23 0.22 -3.31 16 28 C -0.05 -1.76 7.54 22.54 0.17 -1.59 16 29 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.06 2.88 5.09 -2.39 -0.01 2.86 16 31 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.24 2.69 7.49 -2.91 -0.02 2.67 16 33 H 0.45 3.18 7.78 -213.31 -1.66 1.52 16 34 H 0.28 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.24 5.99 5.94 -2.91 -0.02 5.98 16 36 H 0.11 4.02 6.54 -2.91 -0.02 4.00 16 37 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 38 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 39 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 40 H 0.12 3.87 6.77 -2.91 -0.02 3.85 16 Total: -1.00 -73.17 350.01 4.81 -68.36 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -0.53 Total: 16.71 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 8.38 Total: -1.75 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -5.02 Total: -111.07 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.04 Total: -15.72 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -73.17 4.81 -68.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760490627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.618 kcal (2) G-P(sol) polarization free energy of solvation -73.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds