Wall clock time and date at job start Tue Mar 31 2020 21:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34873 * 117.00022 * 2 1 4 4 O 1.21603 * 119.99781 * 359.97438 * 3 2 1 5 5 C 1.46643 * 120.00309 * 180.02562 * 3 2 1 6 6 N 1.37835 * 125.84788 * 0.32223 * 5 3 2 7 7 H 0.97004 * 125.39118 * 359.97438 * 6 5 3 8 8 C 1.34197 * 109.22759 * 180.15642 * 6 5 3 9 9 C 1.50703 * 125.79887 * 179.83679 * 8 6 5 10 10 C 1.38323 * 108.40155 * 359.56971 * 8 6 5 11 11 C 1.47256 * 126.46029 * 180.23962 * 10 8 6 12 12 O 1.21533 * 119.99455 * 90.03079 * 11 10 8 13 13 O 1.34755 * 120.00321 * 270.02818 * 11 10 8 14 14 C 1.45204 * 117.00338 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47670 * 180.02562 * 14 13 11 16 16 O 1.21281 * 119.99492 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00198 * 179.97438 * 15 14 13 18 18 C 1.46496 * 119.99974 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47355 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99586 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99917 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00651 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46853 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.46918 * 120.00020 * 23 21 19 26 26 H 1.48500 * 109.47123 * 240.00645 * 23 21 19 27 27 C 1.36417 * 125.84876 * 180.02562 * 5 3 2 28 28 C 1.50694 * 126.50418 * 0.03863 * 27 5 3 29 29 H 1.09001 * 109.46895 * 299.99873 * 1 2 3 30 30 H 1.08999 * 109.47429 * 60.00356 * 1 2 3 31 31 H 1.09001 * 109.46503 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47152 * 269.68986 * 9 8 6 33 33 H 1.09001 * 109.46980 * 149.69086 * 9 8 6 34 34 H 1.09004 * 109.47113 * 29.69067 * 9 8 6 35 35 H 1.09005 * 109.46898 * 299.99972 * 14 13 11 36 36 H 1.08999 * 109.47236 * 59.99405 * 14 13 11 37 37 H 0.96997 * 119.99775 * 0.02562 * 17 15 14 38 38 H 1.09005 * 109.47182 * 300.00414 * 18 17 15 39 39 H 1.08999 * 109.47256 * 60.00033 * 18 17 15 40 40 H 0.97001 * 120.00366 * 180.02562 * 22 21 19 41 41 H 1.09001 * 109.47494 * 269.97819 * 28 27 5 42 42 H 1.09000 * 109.47552 * 29.97577 * 28 27 5 43 43 H 1.08998 * 109.47296 * 149.97822 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2216 -0.0005 5 6 3.5287 1.2785 -0.0006 6 7 4.3934 0.2051 -0.0074 7 1 4.1299 -0.7284 -0.0123 8 6 5.6574 0.6558 -0.0022 9 6 6.8982 -0.1995 -0.0034 10 6 5.6279 2.0387 -0.0017 11 6 6.7934 2.9388 -0.0016 12 8 7.2736 3.3110 -1.0542 13 8 7.3273 3.3498 1.1654 14 6 8.4745 4.2367 1.0895 15 6 8.9316 4.5872 2.4820 16 8 8.3477 4.1345 3.4438 17 7 9.9893 5.4037 2.6586 18 6 10.4333 5.7449 4.0123 19 6 11.6240 6.6652 3.9335 20 1 12.0115 6.9656 2.9712 21 6 12.2186 7.1237 5.0898 22 7 11.7471 6.7576 6.2616 23 14 13.6951 8.2640 4.9921 24 1 14.0275 8.5224 3.5679 25 1 13.3743 9.5479 5.6658 26 1 14.8566 7.6286 5.6645 27 6 4.2686 2.4246 -0.0001 28 6 3.7372 3.8348 0.0018 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 7.1981 -0.4061 1.0240 33 1 7.7021 0.3273 -0.5176 34 1 6.6919 -1.1383 -0.5175 35 1 9.2842 3.7384 0.5563 36 1 8.1957 5.1467 0.5583 37 1 10.4560 5.7660 1.8893 38 1 9.6237 6.2435 4.5454 39 1 10.7116 4.8348 4.5436 40 1 12.1652 7.0805 7.0751 41 1 3.6084 4.1760 -1.0254 42 1 2.7766 3.8604 0.5162 43 1 4.4422 4.4880 0.5159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768673740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:32 Heat of formation + Delta-G solvation = -169.722024 kcal Electronic energy + Delta-G solvation = -28211.406627 eV Core-core repulsion = 23836.729959 eV Total energy + Delta-G solvation = -4374.676668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.19461 -40.47898 -40.01488 -38.60887 -36.89102 -36.21481 -34.22923 -33.44808 -32.41739 -32.30460 -29.36679 -28.82220 -28.27911 -26.77422 -26.52041 -23.99494 -22.52778 -22.14300 -20.28494 -19.91984 -19.73129 -18.98798 -17.48866 -17.38395 -17.20750 -16.85788 -16.63804 -16.03692 -15.73482 -15.39307 -15.23076 -15.01107 -14.53777 -14.21169 -13.96011 -13.87158 -13.74753 -13.27464 -13.22586 -13.01111 -12.84865 -12.65785 -12.58392 -12.57695 -12.41864 -11.99414 -11.99212 -11.73421 -11.27040 -10.98641 -10.93757 -10.91687 -10.71498 -10.65510 -10.34011 -9.41423 -9.31092 -9.13440 -8.77938 -8.65760 -7.97253 -6.19087 -4.26374 0.77674 1.68943 1.95660 2.21632 2.38754 2.62392 2.83170 3.20342 3.22994 3.30247 3.33278 4.02127 4.21058 4.33310 4.35964 4.56866 4.65814 4.67291 4.75181 4.92257 5.01924 5.10078 5.10704 5.17124 5.19758 5.26518 5.30455 5.36799 5.48088 5.58112 5.72549 5.78427 5.92276 6.12812 6.30909 6.36248 6.80479 7.24039 7.31474 7.32679 7.46998 7.60382 7.70723 7.92739 8.51712 8.72578 8.98400 9.40145 10.91062 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.023145 B = 0.001898 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.471087 B =14748.842876 C =15080.529519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.366 6.366 3 C 0.539 3.461 4 O -0.492 6.492 5 C -0.053 4.053 6 N -0.514 5.514 7 H 0.429 0.571 8 C 0.132 3.868 9 C -0.103 4.103 10 C -0.210 4.210 11 C 0.547 3.453 12 O -0.499 6.499 13 O -0.319 6.319 14 C 0.046 3.954 15 C 0.500 3.500 16 O -0.533 6.533 17 N -0.707 5.707 18 C 0.251 3.749 19 C -0.545 4.545 20 H 0.065 0.935 21 C 0.064 3.936 22 N -0.885 5.885 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.005 4.005 28 C -0.103 4.103 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.393 0.607 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.266 0.734 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.992 -16.791 -16.390 29.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.284 6.284 3 C 0.384 3.616 4 O -0.379 6.379 5 C -0.160 4.160 6 N -0.109 5.109 7 H 0.268 0.732 8 C 0.008 3.992 9 C -0.160 4.160 10 C -0.217 4.217 11 C 0.389 3.611 12 O -0.387 6.387 13 O -0.234 6.234 14 C -0.032 4.032 15 C 0.282 3.718 16 O -0.410 6.410 17 N -0.357 5.357 18 C 0.131 3.869 19 C -0.583 4.583 20 H 0.083 0.917 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.012 4.012 28 C -0.160 4.160 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.226 0.774 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.577 -16.796 -15.758 29.589 hybrid contribution 0.812 0.431 -0.398 1.002 sum -17.765 -16.364 -16.156 29.059 Atomic orbital electron populations 1.23298 0.75286 1.03869 1.02969 1.86529 1.24226 1.32674 1.84925 1.19670 0.86640 0.81873 0.73404 1.90899 1.65183 1.35553 1.46291 1.18477 0.86679 0.87192 1.23693 1.41450 1.04732 1.09208 1.55535 0.73150 1.20695 0.86226 0.92502 0.99734 1.20660 0.92125 0.98548 1.04668 1.18211 0.91407 0.91319 1.20772 1.20178 0.81407 0.77827 0.81696 1.90860 1.60650 1.54334 1.32835 1.86749 1.43853 1.59633 1.33142 1.22916 0.87710 0.94639 0.97920 1.19881 0.81869 0.80663 0.89341 1.90716 1.55479 1.53028 1.41789 1.46357 1.29956 1.47113 1.12288 1.19177 0.94859 0.96139 0.76767 1.21253 1.13938 1.29813 0.93278 0.91687 1.24954 0.97609 0.96403 0.95044 1.69981 1.40746 1.43959 0.97505 0.86340 0.81920 0.80257 0.78268 1.19595 1.20782 1.20789 1.19582 0.89807 0.94967 0.96848 1.20563 1.02466 0.89761 1.03223 0.91506 0.91604 0.87905 0.88740 0.89094 0.90161 0.88416 0.88381 0.77424 0.95250 0.95258 0.92438 0.90280 0.89226 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.57 101.05 1.07 1.28 16 2 O -0.37 -2.98 10.58 -40.97 -0.43 -3.41 16 3 C 0.54 5.69 7.93 34.12 0.27 5.96 16 4 O -0.49 -6.20 14.49 -19.34 -0.28 -6.48 16 5 C -0.05 -0.56 7.02 -82.43 -0.58 -1.14 16 6 N -0.51 -4.10 6.01 -5.62 -0.03 -4.14 16 7 H 0.43 1.96 8.96 -40.82 -0.37 1.59 16 8 C 0.13 1.25 7.21 -81.53 -0.59 0.66 16 9 C -0.10 -0.66 10.24 36.01 0.37 -0.30 16 10 C -0.21 -2.68 6.01 -105.04 -0.63 -3.31 16 11 C 0.55 8.02 7.13 34.40 0.25 8.27 16 12 O -0.50 -7.93 16.90 -19.29 -0.33 -8.25 16 13 O -0.32 -5.22 9.77 -47.32 -0.46 -5.69 16 14 C 0.05 0.70 5.95 36.00 0.21 0.91 16 15 C 0.50 9.99 7.91 -10.99 -0.09 9.90 16 16 O -0.53 -13.06 16.50 -14.10 -0.23 -13.30 16 17 N -0.71 -14.52 5.55 -61.47 -0.34 -14.86 16 18 C 0.25 6.54 5.43 -5.20 -0.03 6.51 16 19 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 20 H 0.07 1.62 7.60 -52.49 -0.40 1.22 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.88 -25.79 13.29 55.43 0.74 -25.05 16 23 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.00 -0.06 6.21 -104.12 -0.65 -0.70 16 28 C -0.10 -1.22 9.63 36.00 0.35 -0.87 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.66 7.93 -51.93 -0.41 0.25 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 1.06 6.41 -51.93 -0.33 0.73 16 43 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -36.43 386.90 -6.65 -43.09 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.63 Total: 2.69 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -0.46 Total: 13.96 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.36 Total: -44.05 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.73 Total: -37.13 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.43 -6.65 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768673740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.637 kcal (2) G-P(sol) polarization free energy of solvation -36.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds