Wall clock time and date at job start Tue Mar 31 2020 20:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00116 * 2 1 4 4 C 1.52996 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47233 * 185.00109 * 4 3 2 6 6 O 1.45198 * 109.47024 * 65.00129 * 4 3 2 7 7 C 1.34232 * 116.99706 * 149.99782 * 6 4 3 8 8 O 1.20820 * 120.00572 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99697 * 180.02562 * 7 6 4 10 10 C 1.50703 * 109.46991 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93104 * 269.72715 * 10 9 7 12 12 C 1.38104 * 120.06798 * 179.72963 * 11 10 9 13 13 C 1.38879 * 119.92976 * 0.56225 * 12 11 10 14 14 O 1.35743 * 120.06968 * 179.68634 * 13 12 11 15 15 C 1.34832 * 117.00395 * 174.48817 * 14 13 12 16 16 H 1.07997 * 119.99616 * 5.06097 * 15 14 13 17 17 C 1.38654 * 120.00440 * 185.05358 * 15 14 13 18 18 N 1.31561 * 119.99783 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00142 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47205 * 60.00053 * 19 17 15 21 21 H 1.48501 * 109.47195 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47140 * 300.00698 * 19 17 15 23 23 C 1.38878 * 119.86076 * 359.71135 * 13 12 11 24 24 C 1.38098 * 119.93595 * 359.97438 * 23 13 12 25 25 C 1.50704 * 109.47486 * 305.00349 * 4 3 2 26 26 O 1.20818 * 120.00191 * 114.99529 * 25 4 3 27 27 O 1.34227 * 119.99578 * 295.00016 * 25 4 3 28 28 C 1.45199 * 116.99873 * 179.97438 * 27 25 4 29 29 H 1.09002 * 109.46546 * 299.99566 * 1 2 3 30 30 H 1.08992 * 109.47253 * 59.99591 * 1 2 3 31 31 H 1.09003 * 109.46970 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47454 * 300.00450 * 3 2 1 33 33 H 1.09004 * 109.46828 * 60.00695 * 3 2 1 34 34 H 1.08998 * 109.47249 * 299.99757 * 9 7 6 35 35 H 1.08993 * 109.47352 * 60.00307 * 9 7 6 36 36 H 1.08003 * 119.96466 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.03555 * 180.27635 * 12 11 10 38 38 H 0.96998 * 119.99871 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.03542 * 179.97438 * 23 13 12 40 40 H 1.07991 * 119.97116 * 180.02562 * 24 23 13 41 41 H 1.09002 * 109.47621 * 179.97438 * 28 27 25 42 42 H 1.09006 * 109.47273 * 300.00287 * 28 27 25 43 43 H 1.08998 * 109.46878 * 60.00024 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1765 0.0889 6 8 3.9717 0.5699 -1.2416 7 6 5.1827 0.9206 -1.7026 8 8 5.8560 1.7145 -1.0893 9 6 5.7024 0.3240 -2.9852 10 6 7.0730 0.8780 -3.2777 11 6 7.2055 2.0275 -4.0352 12 6 8.4599 2.5408 -4.3002 13 6 9.5896 1.8948 -3.8150 14 8 10.8242 2.3933 -4.0792 15 6 11.8703 1.7847 -3.4847 16 1 11.7132 0.8916 -2.8981 17 6 13.1475 2.3054 -3.6264 18 7 13.3387 3.3936 -4.3406 19 14 14.5967 1.4618 -2.8033 20 1 14.7167 0.0729 -3.3148 21 1 15.8427 2.2108 -3.1061 22 1 14.3825 1.4314 -1.3341 23 6 9.4535 0.7376 -3.0594 24 6 8.1961 0.2329 -2.7923 25 6 3.9724 0.3322 1.1628 26 8 4.5082 -0.7323 0.9643 27 8 3.7663 0.7558 2.4197 28 6 4.2124 -0.1170 3.4909 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8464 -0.8899 33 1 1.6887 1.8463 0.8901 34 1 5.7630 -0.7595 -2.8836 35 1 5.0267 0.5751 -3.8027 36 1 6.3269 2.5265 -4.4165 37 1 8.5626 3.4409 -4.8881 38 1 14.2322 3.7580 -4.4395 39 1 10.3300 0.2328 -2.6811 40 1 8.0895 -0.6667 -2.2045 41 1 3.9865 0.3434 4.4528 42 1 3.6983 -1.0754 3.4167 43 1 5.2878 -0.2742 3.4075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774755965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:49 Heat of formation + Delta-G solvation = -207.657276 kcal Electronic energy + Delta-G solvation = -28698.732449 eV Core-core repulsion = 24290.118034 eV Total energy + Delta-G solvation = -4408.614416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.23623 -40.10681 -38.98677 -38.30738 -37.06987 -36.56102 -36.05927 -32.57875 -32.05915 -31.21015 -30.16488 -28.10021 -27.14277 -26.60171 -25.20701 -24.40209 -22.35419 -21.98031 -20.87530 -20.18678 -18.41659 -17.99691 -17.97182 -17.38900 -17.00809 -16.75063 -16.53498 -16.12988 -15.96427 -15.65337 -14.89182 -14.59955 -14.57166 -14.31643 -13.87585 -13.63732 -13.51790 -13.38490 -13.15372 -12.86057 -12.73222 -12.64578 -12.36117 -12.09593 -11.97890 -11.80949 -11.63957 -11.47937 -11.27335 -11.06160 -10.89495 -10.78951 -10.64690 -10.51323 -10.43524 -10.34495 -10.16252 -9.33236 -8.82232 -8.16488 -7.20072 -6.44645 -4.03139 1.85152 1.92654 2.17217 2.24628 2.42795 2.79391 3.14310 3.16137 3.18046 3.18284 3.97733 4.21066 4.34276 4.48133 4.62566 4.74042 4.85179 4.87512 4.93981 4.94194 4.96522 5.02246 5.08842 5.22790 5.25946 5.27717 5.30629 5.31445 5.64513 5.74505 5.83037 6.04745 6.19400 6.23138 6.41095 6.59477 6.69362 6.90407 7.04854 7.22009 7.35355 7.42800 7.44358 7.77815 7.82339 8.00509 9.00851 9.70252 10.73134 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.018035 B = 0.002279 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.195524 B =12280.483867 C =13291.992310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.072 3.928 4 C 0.101 3.899 5 H 0.137 0.863 6 O -0.324 6.324 7 C 0.456 3.544 8 O -0.488 6.488 9 C -0.047 4.047 10 C -0.185 4.185 11 C -0.056 4.056 12 C -0.192 4.192 13 C 0.160 3.840 14 O -0.175 6.175 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.233 4.233 24 C -0.051 4.051 25 C 0.457 3.543 26 O -0.483 6.483 27 O -0.358 6.358 28 C 0.037 3.963 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.271 0.729 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.203 -5.124 10.255 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.005 4.005 4 C 0.044 3.956 5 H 0.154 0.846 6 O -0.241 6.241 7 C 0.298 3.702 8 O -0.373 6.373 9 C -0.084 4.084 10 C -0.186 4.186 11 C -0.074 4.074 12 C -0.211 4.211 13 C 0.105 3.895 14 O -0.078 6.078 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.252 4.252 24 C -0.070 4.070 25 C 0.297 3.703 26 O -0.368 6.368 27 O -0.275 6.275 28 C -0.057 4.057 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.145 0.855 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.416 -5.041 10.220 26.945 hybrid contribution 0.697 -0.328 0.785 1.100 sum -23.720 -5.369 11.005 26.694 Atomic orbital electron populations 1.22789 0.80240 1.03249 1.00209 1.88016 1.20320 1.26292 1.95483 1.22596 0.88251 0.86603 1.03062 1.22131 0.95249 0.97440 0.80795 0.84581 1.86812 1.35962 1.65698 1.35632 1.24541 0.78437 0.79499 0.87696 1.90708 1.56371 1.32105 1.58067 1.20109 0.95510 1.01621 0.91148 1.18631 0.91854 1.00303 1.07831 1.20418 0.95980 0.94228 0.96787 1.20153 0.90331 1.02602 1.08064 1.19404 0.86741 0.91464 0.91855 1.83972 1.10572 1.52496 1.60783 1.21298 0.84172 1.10111 1.31223 0.89062 1.25298 0.98005 0.96184 0.97018 1.70032 1.23101 1.19722 1.36804 0.85775 0.79304 0.78931 0.79398 1.19460 1.20257 1.19485 1.21111 0.97605 0.99603 1.06910 1.20565 0.91891 0.98002 0.96514 1.23596 0.76230 0.86072 0.84394 1.90695 1.38335 1.22308 1.85439 1.86434 1.75600 1.49975 1.15446 1.23302 1.00728 0.94261 0.87369 0.93837 0.93567 0.89292 0.90310 0.89714 0.87414 0.87481 0.87125 0.86377 0.91945 0.85454 0.87569 0.87840 0.91711 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.81 10.15 -38.81 -0.39 -4.20 16 3 C 0.07 0.58 5.80 37.16 0.22 0.79 16 4 C 0.10 1.16 2.88 -27.88 -0.08 1.08 16 5 H 0.14 1.42 7.16 -51.93 -0.37 1.05 16 6 O -0.32 -4.38 9.39 -47.16 -0.44 -4.82 16 7 C 0.46 6.92 7.92 36.01 0.29 7.21 16 8 O -0.49 -8.97 15.25 -18.74 -0.29 -9.26 16 9 C -0.05 -0.63 5.94 -29.03 -0.17 -0.80 16 10 C -0.19 -3.27 4.38 -104.57 -0.46 -3.72 16 11 C -0.06 -1.01 9.69 -39.61 -0.38 -1.40 16 12 C -0.19 -4.15 9.99 -39.39 -0.39 -4.54 16 13 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 14 O -0.18 -5.08 9.76 0.07 0.00 -5.08 16 15 C -0.39 -11.14 9.49 30.89 0.29 -10.85 16 16 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 17 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 18 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 19 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 C -0.23 -5.27 9.17 -39.40 -0.36 -5.63 16 24 C -0.05 -1.00 9.69 -39.61 -0.38 -1.38 16 25 C 0.46 6.21 6.77 36.01 0.24 6.46 16 26 O -0.48 -8.14 16.26 -25.39 -0.41 -8.55 16 27 O -0.36 -4.01 10.56 -39.25 -0.41 -4.43 16 28 C 0.04 0.32 10.56 101.05 1.07 1.38 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.11 1.30 8.08 -51.93 -0.42 0.88 16 35 H 0.11 1.12 8.08 -51.93 -0.42 0.70 16 36 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 40 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 43 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -36.80 383.12 -5.38 -42.18 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.57 Total: 2.73 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 0.63 Total: -5.41 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.76 Total: -24.75 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -1.95 Total: -36.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.80 -5.38 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774755965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.481 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds