Wall clock time and date at job start Tue Mar 31 2020 21:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35015 * 119.56143 * 2 1 4 4 C 1.40925 * 119.81071 * 179.97438 * 3 2 1 5 5 O 1.35448 * 120.51375 * 179.97438 * 4 3 2 6 6 C 1.38253 * 118.97535 * 0.02562 * 4 3 2 7 7 C 1.39979 * 119.12346 * 359.97438 * 6 4 3 8 8 O 1.22122 * 119.92898 * 179.97438 * 7 6 4 9 9 N 1.34597 * 120.14221 * 359.73167 * 7 6 4 10 10 C 1.46496 * 119.47095 * 180.26778 * 9 7 6 11 11 C 1.53003 * 109.47151 * 270.28195 * 10 9 7 12 12 C 1.50695 * 109.47268 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00017 * 359.97438 * 12 11 10 14 14 O 1.34225 * 120.00167 * 179.97438 * 12 11 10 15 15 C 1.45205 * 117.00296 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.46941 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00615 * 0.02562 * 16 15 14 18 18 N 1.34782 * 119.99528 * 180.02562 * 16 15 14 19 19 C 1.46498 * 119.99799 * 179.97438 * 18 16 15 20 20 C 1.50694 * 109.47185 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99773 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00345 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99725 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00025 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47331 * 90.00261 * 24 22 20 26 26 H 1.48513 * 109.46848 * 209.99957 * 24 22 20 27 27 H 1.48496 * 109.47132 * 329.99322 * 24 22 20 28 28 H 1.09001 * 109.46953 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47318 * 119.99375 * 1 2 3 30 30 H 1.09000 * 109.47161 * 240.00006 * 1 2 3 31 31 H 1.08005 * 120.10049 * 0.02642 * 3 2 1 32 32 H 0.96693 * 114.00119 * 179.97438 * 5 4 3 33 33 H 1.07995 * 120.43900 * 179.97438 * 6 4 3 34 34 H 1.09005 * 109.46846 * 30.27416 * 10 9 7 35 35 H 1.08996 * 109.47546 * 150.27780 * 10 9 7 36 36 H 1.08999 * 109.46614 * 299.99835 * 11 10 9 37 37 H 1.08996 * 109.47234 * 59.99394 * 11 10 9 38 38 H 1.08996 * 109.47154 * 300.00155 * 15 14 12 39 39 H 1.08995 * 109.46630 * 60.00081 * 15 14 12 40 40 H 0.96994 * 120.00000 * 0.02562 * 18 16 15 41 41 H 1.08996 * 109.47234 * 300.00123 * 19 18 16 42 42 H 1.08995 * 109.47210 * 60.00455 * 19 18 16 43 43 H 0.97002 * 119.99852 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1732 1.1744 0.0000 4 6 3.5824 1.1805 0.0005 5 8 4.2651 2.3504 0.0000 6 6 4.2574 -0.0260 0.0005 7 6 3.5229 -1.2176 0.0005 8 8 4.1041 -2.2916 0.0000 9 7 2.1774 -1.1821 0.0060 10 6 1.4233 -2.4381 0.0119 11 6 1.1609 -2.8822 -1.4286 12 6 0.3858 -4.1745 -1.4226 13 8 0.0755 -4.6880 -0.3738 14 8 0.0401 -4.7552 -2.5823 15 6 -0.7052 -5.9987 -2.5006 16 6 -1.0015 -6.4990 -3.8909 17 8 -0.6216 -5.8699 -4.8556 18 7 -1.6889 -7.6457 -4.0621 19 6 -1.9774 -8.1318 -5.4136 20 6 -2.7519 -9.4217 -5.3287 21 1 -3.0044 -9.8376 -4.3644 22 6 -3.1383 -10.0710 -6.4820 23 7 -2.8314 -9.5644 -7.6562 24 14 -4.0990 -11.6696 -6.3768 25 1 -5.5537 -11.3723 -6.3528 26 1 -3.7858 -12.5140 -7.5576 27 1 -3.7211 -12.3935 -5.1365 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.6276 2.1065 0.0004 32 1 5.2262 2.2449 0.0009 33 1 5.3371 -0.0489 0.0005 34 1 1.9994 -3.2053 0.5293 35 1 0.4732 -2.2892 0.5249 36 1 0.5850 -2.1150 -1.9461 37 1 2.1110 -3.0311 -1.9417 38 1 -0.1142 -6.7420 -1.9656 39 1 -1.6409 -5.8270 -1.9686 40 1 -1.9931 -8.1486 -3.2905 41 1 -2.5681 -7.3883 -5.9487 42 1 -1.0417 -8.3039 -5.9453 43 1 -3.1029 -10.0214 -8.4676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782294002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:29 Heat of formation + Delta-G solvation = -203.349821 kcal Electronic energy + Delta-G solvation = -27804.896319 eV Core-core repulsion = 23428.761440 eV Total energy + Delta-G solvation = -4376.134879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.67821 -41.75378 -40.40966 -39.52296 -38.23271 -37.68754 -36.19564 -35.20629 -34.42524 -32.61490 -32.12483 -30.70310 -28.57009 -28.40575 -26.30973 -24.61702 -23.81078 -23.29804 -21.91057 -21.66045 -19.73539 -19.35453 -19.14900 -18.38918 -18.10917 -17.96379 -17.77327 -17.09276 -16.99912 -16.63938 -16.58969 -16.40203 -15.84851 -15.41509 -15.05247 -15.00426 -14.71376 -14.63899 -14.48750 -14.25981 -14.12895 -14.05427 -13.89659 -13.61862 -13.55125 -13.05840 -12.94368 -12.75323 -12.71890 -12.30245 -12.23549 -12.07391 -11.93370 -11.82517 -11.50495 -11.19870 -10.93198 -10.82177 -10.26700 -9.94133 -9.05586 -8.30034 -6.46743 -0.17100 0.84220 0.97359 1.06849 1.44394 1.46245 1.54247 1.57418 1.64987 2.33626 2.51693 2.59655 2.67941 3.05349 3.40002 3.47680 3.56236 3.63371 3.78919 3.95667 4.01678 4.04707 4.05975 4.12355 4.22235 4.37607 4.54237 4.61649 4.70189 4.85661 5.04114 5.06076 5.09596 5.14354 5.20542 5.21129 5.41099 5.48683 5.62234 5.81540 6.05632 6.47379 6.50069 6.62360 6.77117 6.97300 7.19969 7.35063 8.82023 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.031247 B = 0.001608 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.859589 B =17404.151536 C =17430.669141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.199 3.801 3 C -0.251 4.251 4 C 0.263 3.737 5 O -0.462 6.462 6 C -0.399 4.399 7 C 0.517 3.483 8 O -0.609 6.609 9 N -0.501 5.501 10 C 0.104 3.896 11 C -0.122 4.122 12 C 0.476 3.524 13 O -0.521 6.521 14 O -0.348 6.348 15 C 0.060 3.940 16 C 0.498 3.502 17 O -0.585 6.585 18 N -0.698 5.698 19 C 0.266 3.734 20 C -0.558 4.558 21 H 0.087 0.913 22 C 0.005 3.995 23 N -0.930 5.930 24 Si 0.985 3.015 25 H -0.270 1.270 26 H -0.285 1.285 27 H -0.256 1.256 28 H 0.121 0.879 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.182 0.818 32 H 0.427 0.573 33 H 0.152 0.848 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.413 0.587 41 H -0.006 1.006 42 H -0.009 1.009 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.559 25.186 21.331 33.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.091 3.909 3 C -0.273 4.273 4 C 0.209 3.791 5 O -0.267 6.267 6 C -0.421 4.421 7 C 0.324 3.676 8 O -0.497 6.497 9 N -0.213 5.213 10 C -0.017 4.017 11 C -0.160 4.160 12 C 0.319 3.681 13 O -0.410 6.410 14 O -0.264 6.264 15 C -0.016 4.016 16 C 0.284 3.716 17 O -0.466 6.466 18 N -0.350 5.350 19 C 0.143 3.857 20 C -0.596 4.596 21 H 0.105 0.895 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.809 3.191 25 H -0.195 1.195 26 H -0.211 1.211 27 H -0.180 1.180 28 H 0.139 0.861 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.199 0.801 32 H 0.285 0.715 33 H 0.170 0.830 34 H 0.105 0.895 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.123 0.877 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.249 0.751 41 H 0.012 0.988 42 H 0.009 0.991 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.535 25.026 20.760 33.167 hybrid contribution 0.613 -1.425 -0.286 1.577 sum 7.148 23.601 20.474 32.052 Atomic orbital electron populations 1.21415 0.84609 1.07785 1.05236 1.20959 0.96916 0.83553 0.89483 1.20239 0.90742 0.98962 1.17391 1.19357 0.92242 0.84093 0.83406 1.84785 1.27037 1.27601 1.87236 1.22190 1.01555 0.90645 1.27727 1.16933 0.81033 0.90974 0.78627 1.90960 1.68947 1.33086 1.56716 1.45505 1.07625 1.07640 1.60538 1.21699 0.98969 0.85327 0.95754 1.21668 1.01813 0.92653 0.99907 1.23688 0.76851 0.86585 0.80939 1.90683 1.52916 1.64626 1.32773 1.86554 1.67142 1.37404 1.35256 1.22776 0.99544 0.85361 0.93948 1.20738 0.78384 0.81361 0.91115 1.90690 1.53776 1.58198 1.43911 1.46039 1.54754 1.23198 1.10975 1.18631 0.94260 0.93768 0.79015 1.21619 1.36474 1.07099 0.94369 0.89546 1.26051 0.96823 1.02164 0.94475 1.70133 1.46740 1.41401 0.98548 0.85145 0.78372 0.77423 0.78203 1.19530 1.21104 1.17985 0.86069 0.88423 0.87940 0.80122 0.71510 0.83032 0.89489 0.84801 0.83995 0.87743 0.86024 0.85043 0.75076 0.98823 0.99100 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.17 8.72 71.24 0.62 0.45 16 2 C 0.20 1.77 6.65 41.19 0.27 2.04 16 3 C -0.25 -2.17 9.57 22.19 0.21 -1.95 16 4 C 0.26 3.09 6.95 22.93 0.16 3.25 16 5 O -0.46 -3.37 13.58 -87.46 -1.19 -4.56 16 6 C -0.40 -6.97 9.71 22.70 0.22 -6.75 16 7 C 0.52 12.13 7.38 84.69 0.63 12.75 16 8 O -0.61 -20.05 16.62 -5.71 -0.09 -20.15 16 9 N -0.50 -7.99 2.59 -637.15 -1.65 -9.63 16 10 C 0.10 1.63 4.15 86.38 0.36 1.99 16 11 C -0.12 -2.06 6.12 29.85 0.18 -1.88 16 12 C 0.48 10.92 7.96 71.23 0.57 11.49 16 13 O -0.52 -13.09 15.73 21.97 0.35 -12.74 16 14 O -0.35 -10.04 9.75 -45.01 -0.44 -10.48 16 15 C 0.06 1.65 5.94 71.24 0.42 2.08 16 16 C 0.50 19.61 7.91 87.66 0.69 20.31 16 17 O -0.59 -29.21 16.50 15.77 0.26 -28.95 16 18 N -0.70 -28.39 5.55 -466.81 -2.59 -30.98 16 19 C 0.27 14.26 5.43 85.63 0.46 14.72 16 20 C -0.56 -29.65 9.28 25.60 0.24 -29.42 16 21 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 22 C 0.00 0.26 5.46 84.65 0.46 0.72 16 23 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 24 Si 0.99 41.63 29.54 68.60 2.03 43.66 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 26 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 28 H 0.12 -0.38 7.81 -2.39 -0.02 -0.40 16 29 H 0.10 0.06 7.11 -2.39 -0.02 0.04 16 30 H 0.10 -0.02 7.34 -2.39 -0.02 -0.04 16 31 H 0.18 0.57 7.88 -2.91 -0.02 0.55 16 32 H 0.43 -0.55 8.74 -74.06 -0.65 -1.20 16 33 H 0.15 2.37 8.00 -2.91 -0.02 2.35 16 34 H 0.09 1.88 7.34 -2.38 -0.02 1.86 16 35 H 0.13 1.27 6.31 -2.39 -0.02 1.25 16 36 H 0.14 1.51 7.16 -2.39 -0.02 1.50 16 37 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.12 2.83 8.13 -2.39 -0.02 2.81 16 39 H 0.13 2.79 8.13 -2.39 -0.02 2.77 16 40 H 0.41 13.39 8.32 -92.71 -0.77 12.62 16 41 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -88.62 378.32 2.12 -86.50 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -0.34 Total: 12.57 kcal Atomic # 6 Polarization: 24.30 SS G_CDS: 5.50 Total: 29.80 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -3.95 Total: -95.66 kcal Atomic # 8 Polarization: -75.75 SS G_CDS: -1.12 Total: -76.87 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -88.62 2.12 -86.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782294002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.853 kcal (2) G-P(sol) polarization free energy of solvation -88.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds