Wall clock time and date at job start Tue Mar 31 2020 20:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48501 * 109.46914 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46902 * 299.99809 * 3 2 1 6 6 H 1.48502 * 109.47288 * 59.99896 * 3 2 1 7 7 C 1.37880 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99983 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47416 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00360 * 179.97438 * 10 9 7 12 12 O 1.21591 * 119.99842 * 5.09192 * 11 10 9 13 13 N 1.34778 * 120.00128 * 185.08197 * 11 10 9 14 14 C 1.47080 * 120.88064 * 175.00588 * 13 11 10 15 15 C 1.53240 * 108.52027 * 231.16604 * 14 13 11 16 16 N 1.46901 * 109.33859 * 306.16685 * 15 14 13 17 17 C 1.46901 * 111.00204 * 187.25584 * 16 15 14 18 18 C 1.50697 * 109.47320 * 170.00315 * 17 16 15 19 19 C 1.38713 * 120.40287 * 89.99491 * 18 17 16 20 20 C 1.38567 * 118.43332 * 179.97438 * 19 18 17 21 21 C 1.38394 * 119.15143 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 119.63447 * 179.97438 * 21 20 19 23 23 N 1.31943 * 120.73043 * 0.25525 * 21 20 19 24 24 C 1.31912 * 121.70546 * 359.47265 * 23 21 20 25 25 C 1.46902 * 111.26571 * 63.10397 * 16 15 14 26 26 C 1.47080 * 120.88172 * 354.98299 * 13 11 10 27 27 H 0.96999 * 119.99825 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47070 * 59.99513 * 9 7 2 29 29 H 1.09006 * 109.47207 * 300.00079 * 9 7 2 30 30 H 0.97003 * 119.99514 * 0.02562 * 10 9 7 31 31 H 1.09003 * 109.63085 * 111.45346 * 14 13 11 32 32 H 1.09004 * 109.78957 * 350.96856 * 14 13 11 33 33 H 1.09001 * 109.48947 * 186.21747 * 15 14 13 34 34 H 1.08993 * 109.49326 * 66.12790 * 15 14 13 35 35 H 1.08998 * 109.46595 * 49.99970 * 17 16 15 36 36 H 1.09000 * 109.46591 * 290.00358 * 17 16 15 37 37 H 1.07995 * 120.78491 * 359.96297 * 19 18 17 38 38 H 1.08000 * 120.42281 * 179.97438 * 20 19 18 39 39 H 1.08008 * 119.60741 * 180.26763 * 24 23 21 40 40 H 1.09001 * 109.49032 * 56.85840 * 25 16 15 41 41 H 1.09003 * 109.49187 * 176.93224 * 25 16 15 42 42 H 1.08997 * 109.62939 * 248.54633 * 26 13 11 43 43 H 1.09005 * 109.62628 * 8.93043 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5622 -5.1069 -0.0919 13 7 2.6252 -5.9063 0.1044 14 6 2.1507 -7.2939 0.2167 15 6 2.8369 -7.9470 1.4212 16 7 4.2925 -7.7969 1.2922 17 6 4.9946 -8.5566 2.3353 18 6 6.4703 -8.5823 2.0308 19 6 7.3057 -7.5894 2.5211 20 6 8.6559 -7.6534 2.2165 21 6 9.1227 -8.6982 1.4382 22 17 10.8119 -8.7903 1.0485 23 7 8.2972 -9.6222 0.9846 24 6 7.0074 -9.5948 1.2596 25 6 4.6864 -6.3818 1.3162 26 6 4.0760 -5.6645 0.1075 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 3.1567 -3.4354 0.0009 31 1 2.4040 -7.8421 -0.6908 32 1 1.0703 -7.3039 0.3609 33 1 2.5822 -9.0063 1.4545 34 1 2.5010 -7.4626 2.3379 35 1 4.6112 -9.5765 2.3620 36 1 4.8314 -8.0816 3.3027 37 1 6.9130 -6.7854 3.1258 38 1 9.3352 -6.8971 2.5811 39 1 6.3629 -10.3711 0.8740 40 1 4.3248 -5.9192 2.2346 41 1 5.7729 -6.3059 1.2737 42 1 4.5144 -6.0560 -0.8104 43 1 4.2687 -4.5939 0.1777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787350897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:30 Heat of formation + Delta-G solvation = 18.198726 kcal Electronic energy + Delta-G solvation = -26320.367121 eV Core-core repulsion = 22426.841223 eV Total energy + Delta-G solvation = -3893.525897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88541 -39.89677 -38.08437 -37.00556 -34.91288 -34.28142 -33.05460 -32.41194 -31.79600 -31.05693 -28.34464 -26.92071 -25.02282 -24.45115 -23.70845 -22.71810 -22.05002 -20.97653 -19.11706 -18.18065 -17.83859 -17.18077 -16.21979 -16.08550 -15.78747 -15.52200 -15.19603 -15.06779 -14.74405 -14.70119 -14.53793 -14.06465 -13.78718 -13.62812 -13.41562 -13.13325 -12.56824 -12.43701 -12.09632 -12.03506 -11.97521 -11.73626 -11.67107 -11.45397 -11.38191 -11.11185 -10.93440 -10.92444 -10.35933 -10.30390 -10.04636 -9.41141 -9.35684 -9.32024 -8.82571 -8.74738 -8.36414 -7.75014 -6.17216 -4.23820 0.43477 0.70522 1.42173 3.03097 3.16561 3.22351 3.29843 3.32749 3.67529 3.88103 4.02145 4.19745 4.29163 4.35980 4.42270 4.54495 4.58151 4.76868 4.91551 4.95573 5.02597 5.14648 5.18714 5.19029 5.25084 5.28879 5.39285 5.42026 5.53919 5.67389 5.77213 5.83221 6.01413 6.02429 6.59328 6.63412 6.75140 7.12050 7.28003 7.48899 7.52050 7.55553 7.83656 8.00173 8.73527 8.87467 9.29271 9.45449 10.93050 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.002340 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.053461 B =11964.673171 C =13703.086991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.697 3.303 12 O -0.598 6.598 13 N -0.641 5.641 14 C 0.137 3.863 15 C 0.042 3.958 16 N -0.532 5.532 17 C 0.097 3.903 18 C -0.124 4.124 19 C -0.058 4.058 20 C -0.153 4.153 21 C 0.173 3.827 22 Cl -0.034 7.034 23 N -0.479 5.479 24 C 0.140 3.860 25 C 0.037 3.963 26 C 0.119 3.881 27 H 0.265 0.735 28 H 0.026 0.974 29 H 0.023 0.977 30 H 0.385 0.615 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.167 0.833 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.757 -19.791 6.579 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.384 5.384 11 C 0.399 3.601 12 O -0.477 6.477 13 N -0.381 5.381 14 C 0.013 3.987 15 C -0.086 4.086 16 N -0.257 5.257 17 C -0.031 4.031 18 C -0.126 4.126 19 C -0.084 4.084 20 C -0.174 4.174 21 C 0.008 3.992 22 Cl -0.006 7.006 23 N -0.189 5.189 24 C -0.017 4.017 25 C -0.092 4.092 26 C -0.005 4.005 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.220 0.780 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.184 0.816 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 17.279 -20.630 5.510 27.469 hybrid contribution 0.630 2.044 1.228 2.467 sum 17.909 -18.586 6.738 26.675 Atomic orbital electron populations 1.69989 1.06083 1.27164 1.48974 1.24948 0.94916 0.99405 0.94768 0.86366 0.79799 0.82995 0.77760 1.19659 1.20772 1.20823 1.21240 0.93217 0.90420 1.53062 0.92002 1.18993 0.87812 0.81111 0.97601 1.45879 1.10798 1.04457 1.77222 1.16059 0.84767 0.81042 0.78252 1.90862 1.14402 1.83840 1.58602 1.47342 1.05172 1.06055 1.79526 1.21397 0.99856 0.80519 0.96889 1.22570 0.86361 1.01218 0.98446 1.61969 1.06586 1.10457 1.46659 1.20965 0.88771 1.00000 0.93399 1.20858 0.96813 0.96068 0.98884 1.21582 0.92305 0.97561 0.96971 1.21838 0.96731 0.98919 0.99884 1.21678 0.88058 0.93068 0.96348 1.98416 1.11005 1.97953 1.93196 1.67059 1.04572 1.25851 1.21427 1.22579 0.89316 0.97000 0.92846 1.22599 1.00585 0.87660 0.98329 1.21598 0.80946 1.00067 0.97890 0.92505 0.95635 0.95870 0.78039 0.91505 0.88533 0.89463 0.94013 0.89005 0.93219 0.83835 0.83620 0.81635 0.93870 0.89801 0.91084 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.11 5.43 -5.20 -0.03 7.09 16 10 N -0.73 -15.73 5.46 -66.41 -0.36 -16.09 16 11 C 0.70 14.54 8.31 -86.92 -0.72 13.82 16 12 O -0.60 -14.94 15.83 5.29 0.08 -14.86 16 13 N -0.64 -9.86 3.01 -178.19 -0.54 -10.39 16 14 C 0.14 1.74 6.58 -3.60 -0.02 1.72 16 15 C 0.04 0.40 5.62 -3.70 -0.02 0.38 16 16 N -0.53 -4.60 4.62 -235.77 -1.09 -5.69 16 17 C 0.10 0.62 5.14 -4.98 -0.03 0.60 16 18 C -0.12 -0.86 4.89 -104.48 -0.51 -1.37 16 19 C -0.06 -0.38 8.03 -39.28 -0.32 -0.69 16 20 C -0.15 -1.09 9.88 -39.40 -0.39 -1.48 16 21 C 0.17 1.57 7.27 -17.45 -0.13 1.44 16 22 Cl -0.03 -0.29 29.11 -51.86 -1.51 -1.80 16 23 N -0.48 -4.76 10.34 -10.36 -0.11 -4.87 16 24 C 0.14 1.11 10.86 -17.55 -0.19 0.92 16 25 C 0.04 0.35 5.36 -3.70 -0.02 0.33 16 26 C 0.12 1.42 6.60 -3.61 -0.02 1.40 16 27 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.38 7.15 5.82 -40.82 -0.24 6.91 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.39 7.11 -51.93 -0.37 1.02 16 33 H 0.09 0.62 7.99 -51.93 -0.41 0.20 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.46 7.92 -51.93 -0.41 0.05 16 36 H 0.05 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.14 0.70 7.96 -52.49 -0.42 0.28 16 38 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.17 0.99 8.06 -52.48 -0.42 0.56 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.69 5.68 -51.93 -0.29 0.39 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.02 5.63 -51.93 -0.29 0.72 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -33.86 368.28 -10.84 -44.70 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.77 Total: 2.20 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -2.81 Total: 10.85 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -1.36 Total: -62.32 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.08 Total: -14.86 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.51 Total: -1.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.86 -10.84 -44.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.899 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds