Wall clock time and date at job start Tue Mar 31 2020 20:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48501 * 109.46914 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46902 * 299.99809 * 3 2 1 6 6 H 1.48502 * 109.47288 * 59.99896 * 3 2 1 7 7 C 1.37880 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99983 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47416 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00360 * 179.97438 * 10 9 7 12 12 O 1.21591 * 119.99842 * 5.09192 * 11 10 9 13 13 N 1.34778 * 120.00128 * 185.08197 * 11 10 9 14 14 C 1.47080 * 120.88064 * 175.00588 * 13 11 10 15 15 C 1.53240 * 108.52027 * 231.16604 * 14 13 11 16 16 N 1.46901 * 109.33859 * 306.16685 * 15 14 13 17 17 C 1.46901 * 111.00204 * 187.25584 * 16 15 14 18 18 C 1.50697 * 109.47320 * 170.00315 * 17 16 15 19 19 C 1.38713 * 120.40287 * 89.99491 * 18 17 16 20 20 C 1.38567 * 118.43332 * 179.97438 * 19 18 17 21 21 C 1.38394 * 119.15143 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 119.63447 * 179.97438 * 21 20 19 23 23 N 1.31943 * 120.73043 * 0.25525 * 21 20 19 24 24 C 1.31912 * 121.70546 * 359.47265 * 23 21 20 25 25 C 1.46902 * 111.26571 * 63.10397 * 16 15 14 26 26 C 1.47080 * 120.88172 * 354.98299 * 13 11 10 27 27 H 0.96999 * 119.99825 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47070 * 59.99513 * 9 7 2 29 29 H 1.09006 * 109.47207 * 300.00079 * 9 7 2 30 30 H 0.97003 * 119.99514 * 0.02562 * 10 9 7 31 31 H 1.09003 * 109.63085 * 111.45346 * 14 13 11 32 32 H 1.09004 * 109.78957 * 350.96856 * 14 13 11 33 33 H 1.09001 * 109.48947 * 186.21747 * 15 14 13 34 34 H 1.08993 * 109.49326 * 66.12790 * 15 14 13 35 35 H 1.08998 * 109.46595 * 49.99970 * 17 16 15 36 36 H 1.09000 * 109.46591 * 290.00358 * 17 16 15 37 37 H 1.07995 * 120.78491 * 359.96297 * 19 18 17 38 38 H 1.08000 * 120.42281 * 179.97438 * 20 19 18 39 39 H 1.08008 * 119.60741 * 180.26763 * 24 23 21 40 40 H 1.09001 * 109.49032 * 56.85840 * 25 16 15 41 41 H 1.09003 * 109.49187 * 176.93224 * 25 16 15 42 42 H 1.08997 * 109.62939 * 248.54633 * 26 13 11 43 43 H 1.09005 * 109.62628 * 8.93043 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5622 -5.1069 -0.0919 13 7 2.6252 -5.9063 0.1044 14 6 2.1507 -7.2939 0.2167 15 6 2.8369 -7.9470 1.4212 16 7 4.2925 -7.7969 1.2922 17 6 4.9946 -8.5566 2.3353 18 6 6.4703 -8.5823 2.0308 19 6 7.3057 -7.5894 2.5211 20 6 8.6559 -7.6534 2.2165 21 6 9.1227 -8.6982 1.4382 22 17 10.8119 -8.7903 1.0485 23 7 8.2972 -9.6222 0.9846 24 6 7.0074 -9.5948 1.2596 25 6 4.6864 -6.3818 1.3162 26 6 4.0760 -5.6645 0.1075 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 3.1567 -3.4354 0.0009 31 1 2.4040 -7.8421 -0.6908 32 1 1.0703 -7.3039 0.3609 33 1 2.5822 -9.0063 1.4545 34 1 2.5010 -7.4626 2.3379 35 1 4.6112 -9.5765 2.3620 36 1 4.8314 -8.0816 3.3027 37 1 6.9130 -6.7854 3.1258 38 1 9.3352 -6.8971 2.5811 39 1 6.3629 -10.3711 0.8740 40 1 4.3248 -5.9192 2.2346 41 1 5.7729 -6.3059 1.2737 42 1 4.5144 -6.0560 -0.8104 43 1 4.2687 -4.5939 0.1777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787350897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:29 Heat of formation + Delta-G solvation = -6.129017 kcal Electronic energy + Delta-G solvation = -26321.422051 eV Core-core repulsion = 22426.841223 eV Total energy + Delta-G solvation = -3894.580828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57594 -41.14052 -39.18170 -37.64059 -36.23963 -35.97062 -34.41911 -33.59644 -32.53719 -32.03002 -29.68710 -28.42007 -25.94232 -25.17793 -24.72644 -24.23461 -22.83911 -22.11064 -20.64456 -19.54156 -18.38993 -18.08330 -17.76669 -17.36692 -16.71685 -16.63195 -16.55686 -16.21014 -15.84970 -15.45212 -15.27366 -15.19633 -14.89829 -14.78448 -14.55088 -14.17862 -14.03896 -13.80121 -13.37072 -13.07153 -12.86424 -12.75360 -12.74529 -12.67462 -12.41323 -12.30348 -12.22350 -12.16441 -11.95745 -11.44719 -11.14534 -10.91002 -10.81772 -10.62799 -10.09460 -9.89185 -9.56836 -9.21633 -8.28478 -6.44995 -0.12584 0.18489 0.83250 1.43641 1.45243 1.58185 1.74872 2.18890 2.38401 2.51361 3.02563 3.06616 3.14918 3.50511 3.66469 3.84241 3.88707 3.94743 3.99879 4.01804 4.21634 4.26616 4.33399 4.54018 4.55787 4.71014 4.73707 4.77824 4.82929 4.86191 4.90534 5.06335 5.07099 5.17408 5.26542 5.46416 5.52145 5.54480 5.69956 5.84247 5.93704 5.95816 6.14955 6.66564 6.71944 7.16085 7.25236 7.68065 8.84091 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.002340 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.053461 B =11964.673171 C =13703.086991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.286 3.714 10 N -0.724 5.724 11 C 0.693 3.307 12 O -0.648 6.648 13 N -0.630 5.630 14 C 0.130 3.870 15 C 0.054 3.946 16 N -0.534 5.534 17 C 0.100 3.900 18 C -0.121 4.121 19 C -0.057 4.057 20 C -0.152 4.152 21 C 0.154 3.846 22 Cl -0.042 7.042 23 N -0.508 5.508 24 C 0.133 3.867 25 C 0.045 3.955 26 C 0.113 3.887 27 H 0.269 0.731 28 H -0.016 1.016 29 H -0.015 1.015 30 H 0.401 0.599 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.031 0.969 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.181 0.819 40 H 0.038 0.962 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.235 -19.972 7.475 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.590 4.590 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.380 5.380 11 C 0.394 3.606 12 O -0.530 6.530 13 N -0.369 5.369 14 C 0.007 3.993 15 C -0.074 4.074 16 N -0.259 5.259 17 C -0.027 4.027 18 C -0.123 4.123 19 C -0.083 4.083 20 C -0.172 4.172 21 C -0.010 4.010 22 Cl -0.013 7.013 23 N -0.219 5.219 24 C -0.025 4.025 25 C -0.084 4.084 26 C -0.010 4.010 27 H 0.078 0.922 28 H 0.002 0.998 29 H 0.003 0.997 30 H 0.239 0.761 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.050 0.950 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.182 0.818 38 H 0.181 0.819 39 H 0.198 0.802 40 H 0.056 0.944 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.846 -20.877 6.418 29.511 hybrid contribution -0.151 1.975 0.936 2.191 sum 19.694 -18.902 7.354 28.271 Atomic orbital electron populations 1.70151 1.08279 1.28502 1.49960 1.26069 0.95787 1.03868 0.93872 0.85098 0.79119 0.77239 0.77670 1.17522 1.20555 1.20386 1.21593 0.94214 0.90384 1.52844 0.89916 1.18412 0.88102 0.83395 0.93862 1.45474 1.10822 1.03919 1.77795 1.16249 0.84770 0.81653 0.77920 1.90822 1.16944 1.84643 1.60637 1.47380 1.06139 1.05746 1.77606 1.21629 0.99132 0.79163 0.99340 1.22455 0.86620 1.02449 0.95899 1.61942 1.06054 1.09960 1.47914 1.21019 0.88038 1.00776 0.92860 1.20913 0.97087 0.95834 0.98480 1.21864 0.91969 0.97835 0.96627 1.22056 0.97431 0.98610 0.99131 1.21894 0.87910 0.93869 0.97343 1.98406 1.11570 1.98011 1.93333 1.67015 1.05584 1.26771 1.22562 1.22884 0.88884 0.97743 0.92952 1.22514 1.01346 0.88001 0.96555 1.21872 0.78542 1.00684 0.99907 0.92241 0.99844 0.99668 0.76082 0.90150 0.90855 0.86334 0.95029 0.87011 0.92327 0.81822 0.81886 0.80186 0.94365 0.87882 0.89939 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 41.96 29.54 68.60 2.03 43.98 16 4 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.55 -30.06 9.28 25.60 0.24 -29.82 16 8 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.29 15.97 5.43 85.63 0.47 16.44 16 10 N -0.72 -31.90 5.46 -482.29 -2.63 -34.54 16 11 C 0.69 29.64 8.31 179.06 1.49 31.13 16 12 O -0.65 -33.99 15.83 -4.00 -0.06 -34.06 16 13 N -0.63 -19.02 3.01 -835.93 -2.52 -21.54 16 14 C 0.13 3.18 6.58 86.35 0.57 3.75 16 15 C 0.05 0.88 5.62 86.38 0.49 1.36 16 16 N -0.53 -7.42 4.62 -899.83 -4.16 -11.58 16 17 C 0.10 0.90 5.14 85.56 0.44 1.34 16 18 C -0.12 -1.28 4.89 -19.78 -0.10 -1.38 16 19 C -0.06 -0.55 8.03 22.46 0.18 -0.37 16 20 C -0.15 -1.79 9.88 22.39 0.22 -1.57 16 21 C 0.15 2.56 7.27 84.71 0.62 3.18 16 22 Cl -0.04 -0.68 29.11 -2.72 -0.08 -0.76 16 23 N -0.51 -9.36 10.34 -186.69 -1.93 -11.29 16 24 C 0.13 1.77 10.86 84.66 0.92 2.69 16 25 C 0.04 0.71 5.36 86.38 0.46 1.18 16 26 C 0.11 2.46 6.60 86.35 0.57 3.03 16 27 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 28 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 29 H -0.01 -0.92 8.14 -2.38 -0.02 -0.93 16 30 H 0.40 14.72 5.82 -92.71 -0.54 14.18 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 2.15 7.11 -2.38 -0.02 2.14 16 33 H 0.12 1.23 7.99 -2.39 -0.02 1.21 16 34 H 0.03 0.59 8.14 -2.39 -0.02 0.58 16 35 H 0.11 0.61 7.92 -2.39 -0.02 0.60 16 36 H 0.06 0.48 8.08 -2.39 -0.02 0.46 16 37 H 0.16 0.92 7.96 -2.91 -0.02 0.89 16 38 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 1.30 5.68 -2.39 -0.01 1.28 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.84 5.63 -2.38 -0.01 1.83 16 Total: -1.00 -77.10 368.28 -1.55 -78.66 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.50 Total: 15.34 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: 7.02 Total: 31.61 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -10.95 Total: -134.77 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.06 Total: -34.06 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -77.10 -1.55 -78.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787350897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.526 kcal (2) G-P(sol) polarization free energy of solvation -77.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds