Wall clock time and date at job start Tue Mar 31 2020 21:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38217 * 120.36883 * 2 1 4 4 N 1.31891 * 120.93147 * 179.97438 * 3 2 1 5 5 C 1.31892 * 121.77638 * 0.02562 * 4 3 2 6 6 Cl 1.73604 * 119.68087 * 179.97438 * 5 4 3 7 7 C 1.38995 * 120.63653 * 0.02562 * 5 4 3 8 8 N 1.40029 * 120.48992 * 180.02562 * 7 5 4 9 9 C 1.34774 * 119.99971 * 162.77335 * 8 7 5 10 10 O 1.21588 * 120.00010 * 354.37178 * 9 8 7 11 11 N 1.34784 * 120.00128 * 174.36303 * 9 8 7 12 12 C 1.46493 * 119.99858 * 180.02562 * 11 9 8 13 13 C 1.53352 * 109.42074 * 275.13079 * 12 11 9 14 14 C 1.53191 * 109.15340 * 178.67747 * 13 12 11 15 15 N 1.46928 * 108.88940 * 54.57914 * 14 13 12 16 16 C 1.36932 * 120.63104 * 126.35026 * 15 14 13 17 17 H 1.08004 * 119.99782 * 331.89046 * 16 15 14 18 18 C 1.38813 * 120.00300 * 151.89864 * 16 15 14 19 19 N 1.31618 * 119.99874 * 343.55401 * 18 16 15 20 20 Si 1.86796 * 120.00132 * 163.56206 * 18 16 15 21 21 H 1.48497 * 109.47488 * 94.80371 * 20 18 16 22 22 H 1.48500 * 109.47080 * 214.80310 * 20 18 16 23 23 H 1.48498 * 109.47278 * 334.80087 * 20 18 16 24 24 C 1.46925 * 118.73897 * 306.32045 * 15 14 13 25 25 C 1.53040 * 109.45843 * 155.00505 * 12 11 9 26 26 C 1.38571 * 120.37268 * 180.30357 * 2 1 3 27 27 H 1.08999 * 109.47657 * 90.00252 * 1 2 3 28 28 H 1.09009 * 109.46885 * 209.99621 * 1 2 3 29 29 H 1.09001 * 109.47624 * 329.99430 * 1 2 3 30 30 H 1.08009 * 119.53223 * 0.02562 * 3 2 1 31 31 H 0.96997 * 120.00145 * 342.77363 * 8 7 5 32 32 H 0.97002 * 119.99483 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.46237 * 35.03204 * 12 11 9 34 34 H 1.08996 * 109.68374 * 58.71309 * 13 12 11 35 35 H 1.09011 * 109.47629 * 298.51625 * 13 12 11 36 36 H 1.08999 * 109.58506 * 294.71950 * 14 13 12 37 37 H 1.08994 * 109.59088 * 174.43656 * 14 13 12 38 38 H 0.97002 * 119.99865 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.58851 * 173.40416 * 24 15 14 40 40 H 1.09007 * 109.58928 * 293.67808 * 24 15 14 41 41 H 1.09004 * 109.49863 * 61.43779 * 25 12 11 42 42 H 1.09002 * 109.49805 * 301.33600 * 25 12 11 43 43 H 1.08003 * 120.81094 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2057 1.1925 0.0000 4 7 3.5246 1.2055 0.0005 5 6 4.2301 0.0911 0.0005 6 17 5.9643 0.1716 0.0005 7 6 3.5985 -1.1471 -0.0005 8 7 4.3506 -2.3282 0.0000 9 6 3.7718 -3.4955 0.3447 10 8 2.6266 -3.5090 0.7531 11 7 4.4622 -4.6480 0.2366 12 6 3.8328 -5.9168 0.6107 13 6 3.9840 -6.1351 2.1211 14 6 3.2952 -7.4468 2.5107 15 7 3.8393 -8.5334 1.6849 16 6 4.3487 -9.6637 2.2663 17 1 4.7747 -9.6159 3.2577 18 6 4.3178 -10.8708 1.5817 19 7 3.5301 -11.0149 0.5371 20 14 5.3938 -12.2908 2.1429 21 1 4.6121 -13.1803 3.0389 22 1 5.8541 -13.0609 0.9596 23 1 6.5709 -11.7601 2.8765 24 6 3.8259 -8.3845 0.2233 25 6 4.5091 -7.0635 -0.1441 26 6 2.2076 -1.1955 -0.0063 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6641 2.1270 0.0004 31 1 5.2882 -2.3064 -0.2476 32 1 5.3759 -4.6372 -0.0890 33 1 2.7741 -5.8869 0.3530 34 1 3.5220 -5.3078 2.6597 35 1 5.0424 -6.1902 2.3762 36 1 2.2220 -7.3606 2.3404 37 1 3.4822 -7.6591 3.5633 38 1 3.5088 -11.8583 0.0584 39 1 4.3652 -9.2143 -0.2336 40 1 2.7960 -8.3774 -0.1339 41 1 5.5625 -7.1097 0.1322 42 1 4.4210 -6.8945 -1.2173 43 1 1.6870 -2.1418 -0.0118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787449724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:57 Heat of formation + Delta-G solvation = 3.131012 kcal Electronic energy + Delta-G solvation = -26621.608281 eV Core-core repulsion = 22727.428999 eV Total energy + Delta-G solvation = -3894.179283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.21409 -40.83961 -39.17946 -37.82185 -36.49948 -36.00350 -34.50927 -34.00824 -32.08806 -31.50612 -30.53452 -28.19994 -26.97587 -25.28117 -24.07051 -23.75136 -22.97642 -22.01400 -21.07738 -19.84851 -18.91765 -18.37235 -18.26447 -17.49650 -16.92019 -16.65020 -16.38061 -15.84980 -15.59150 -15.36859 -15.28922 -15.01057 -14.78316 -14.43141 -14.30522 -14.06733 -14.02845 -13.68616 -13.22753 -13.01007 -12.86683 -12.62907 -12.60401 -12.52138 -12.43103 -12.38146 -12.19773 -12.01645 -11.86727 -11.61431 -11.48906 -11.31660 -10.69848 -10.55687 -10.29411 -10.10012 -9.25752 -8.70409 -7.88006 -5.33315 -0.21311 0.09173 0.69266 1.27909 1.48107 1.49792 1.59545 1.87377 2.51947 2.59795 2.90755 3.28877 3.45362 3.60312 3.66702 3.85174 3.91749 4.00565 4.03700 4.09418 4.32382 4.46009 4.59757 4.64764 4.73117 4.82191 4.84421 4.85993 4.98271 5.01235 5.05857 5.15138 5.19802 5.28888 5.30584 5.46873 5.50078 5.60730 5.64420 5.66819 5.78184 6.39462 6.62504 6.77270 7.15052 7.28326 7.84601 8.36610 9.19058 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.002313 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.082002 B =12101.926998 C =12864.700727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C 0.086 3.914 4 N -0.468 5.468 5 C 0.112 3.888 6 Cl -0.027 7.027 7 C 0.143 3.857 8 N -0.665 5.665 9 C 0.705 3.295 10 O -0.599 6.599 11 N -0.715 5.715 12 C 0.181 3.819 13 C -0.126 4.126 14 C 0.145 3.855 15 N -0.609 5.609 16 C -0.262 4.262 17 H 0.066 0.934 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.269 1.269 24 C 0.178 3.822 25 C -0.129 4.129 26 C -0.112 4.112 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.198 0.802 31 H 0.422 0.578 32 H 0.413 0.587 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.010 0.990 37 H 0.056 0.944 38 H 0.251 0.749 39 H 0.064 0.936 40 H -0.003 1.003 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 24.748 -4.415 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.073 4.073 4 N -0.178 5.178 5 C -0.055 4.055 6 Cl 0.002 6.998 7 C 0.042 3.958 8 N -0.312 5.312 9 C 0.405 3.595 10 O -0.478 6.478 11 N -0.369 5.369 12 C 0.076 3.924 13 C -0.166 4.166 14 C 0.019 3.981 15 N -0.333 5.333 16 C -0.393 4.393 17 H 0.084 0.916 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.795 3.205 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.194 1.194 24 C 0.052 3.948 25 C -0.168 4.168 26 C -0.140 4.140 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.215 0.785 31 H 0.261 0.739 32 H 0.249 0.751 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.015 0.985 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.214 25.269 -4.144 25.607 hybrid contribution 1.023 -1.940 -0.010 2.194 sum 1.237 23.328 -4.154 23.727 Atomic orbital electron populations 1.20836 0.87286 1.04471 1.04064 1.21319 0.99689 0.92368 0.96945 1.23061 0.87352 0.99367 0.97491 1.66985 1.09811 1.28672 1.12290 1.21222 0.87948 0.88475 1.07807 1.98386 1.06276 1.98332 1.96833 1.18207 0.91943 0.84735 1.00918 1.42500 1.14709 1.04181 1.69818 1.15993 0.84567 0.80629 0.78263 1.90812 1.18122 1.85893 1.52999 1.45221 1.17920 1.04453 1.69295 1.20678 0.96903 0.80591 0.94216 1.22264 1.01216 0.97358 0.95742 1.20953 0.94514 0.87716 0.94941 1.44352 1.70419 1.16617 1.01895 1.19506 1.31307 0.86687 1.01762 0.91584 1.25787 0.99870 0.99485 0.99293 1.70168 1.39208 1.25361 1.23355 0.85273 0.78956 0.79258 0.77018 1.21561 1.21733 1.19380 1.20577 0.96145 0.94426 0.83652 1.22272 1.00450 0.94431 0.99676 1.22254 0.91493 1.01536 0.98706 0.89074 0.91422 0.88468 0.78495 0.73895 0.75078 0.91587 0.92039 0.91619 0.97203 0.92581 0.94008 0.91800 0.98494 0.91094 0.90256 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.03 71.23 0.71 -0.49 16 2 C -0.10 -1.73 5.89 -19.79 -0.12 -1.85 16 3 C 0.09 1.41 10.85 84.68 0.92 2.33 16 4 N -0.47 -10.03 10.33 -186.21 -1.92 -11.95 16 5 C 0.11 2.47 7.29 84.87 0.62 3.08 16 6 Cl -0.03 -0.50 27.86 -2.72 -0.08 -0.57 16 7 C 0.14 3.26 6.54 38.24 0.25 3.51 16 8 N -0.66 -13.90 5.29 -316.77 -1.68 -15.58 16 9 C 0.70 18.42 8.40 179.05 1.50 19.92 16 10 O -0.60 -19.73 12.86 -3.99 -0.05 -19.78 16 11 N -0.72 -17.01 5.08 -457.19 -2.32 -19.33 16 12 C 0.18 5.66 2.42 45.12 0.11 5.77 16 13 C -0.13 -4.24 5.68 30.78 0.17 -4.07 16 14 C 0.14 6.05 6.51 86.36 0.56 6.62 16 15 N -0.61 -29.87 3.00 -699.10 -2.09 -31.97 16 16 C -0.26 -14.14 9.59 84.03 0.81 -13.34 16 17 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 18 C -0.05 -2.68 4.93 84.86 0.42 -2.26 16 19 N -0.93 -54.13 11.16 21.65 0.24 -53.89 16 20 Si 0.97 43.88 29.58 68.60 2.03 45.91 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 C 0.18 8.18 5.30 86.36 0.46 8.64 16 25 C -0.13 -4.27 5.55 30.67 0.17 -4.10 16 26 C -0.11 -2.57 8.60 22.58 0.19 -2.38 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.89 8.10 -2.38 -0.02 0.87 16 29 H 0.10 0.62 8.09 -2.39 -0.02 0.61 16 30 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.42 6.59 7.61 -92.71 -0.71 5.89 16 32 H 0.41 7.12 8.62 -92.71 -0.80 6.32 16 33 H 0.07 2.37 7.58 -2.39 -0.02 2.36 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 2.15 8.14 -2.38 -0.02 2.14 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 38 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.06 3.31 6.04 -2.39 -0.01 3.30 16 40 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 41 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.16 4.39 5.39 -2.91 -0.02 4.38 16 Total: -1.00 -67.93 364.67 0.47 -67.47 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.44 Total: 18.31 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 6.78 Total: 21.39 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -7.78 Total: -132.73 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.57 kcal Total: -67.93 0.47 -67.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787449724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.596 kcal (2) G-P(sol) polarization free energy of solvation -67.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds