Wall clock time and date at job start Tue Mar 31 2020 20:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99706 * 2 1 4 4 H 1.48508 * 109.47094 * 269.99704 * 3 2 1 5 5 H 1.48500 * 109.47472 * 30.00027 * 3 2 1 6 6 H 1.48506 * 109.46943 * 150.00171 * 3 2 1 7 7 C 1.38808 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99979 * 170.10387 * 7 2 1 9 9 N 1.36940 * 120.00210 * 350.10398 * 7 2 1 10 10 C 1.46924 * 120.62843 * 328.76219 * 9 7 2 11 11 C 1.53199 * 108.77560 * 233.62731 * 10 9 7 12 12 C 1.53043 * 109.31197 * 305.36917 * 11 10 9 13 13 C 1.53001 * 109.45669 * 181.38442 * 12 11 10 14 14 N 1.46499 * 109.46619 * 174.97118 * 13 12 11 15 15 C 1.34782 * 119.99608 * 180.02562 * 14 13 12 16 16 O 1.21607 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.47372 * 119.99736 * 180.02562 * 15 14 13 18 18 C 1.40044 * 120.59275 * 354.17913 * 17 15 14 19 19 C 1.38232 * 118.38035 * 180.30202 * 18 17 15 20 20 C 1.38579 * 119.50209 * 359.95391 * 19 18 17 21 21 Cl 1.73605 * 119.41170 * 180.02562 * 20 19 18 22 22 N 1.31964 * 121.18201 * 0.04641 * 20 19 18 23 23 C 1.32422 * 121.75963 * 359.97438 * 22 20 19 24 24 N 1.38258 * 119.82026 * 179.97438 * 23 22 20 25 25 C 1.53039 * 109.52815 * 61.36754 * 12 11 10 26 26 C 1.46929 * 120.63185 * 148.78270 * 9 7 2 27 27 H 0.96993 * 120.00391 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.58866 * 113.84210 * 10 9 7 29 29 H 1.09002 * 109.70761 * 353.48245 * 10 9 7 30 30 H 1.08995 * 109.50070 * 185.41208 * 11 10 9 31 31 H 1.09003 * 109.49516 * 65.31965 * 11 10 9 32 32 H 1.09003 * 109.45682 * 301.35641 * 12 11 10 33 33 H 1.09001 * 109.47239 * 54.97510 * 13 12 11 34 34 H 1.09000 * 109.47032 * 294.96682 * 13 12 11 35 35 H 0.97005 * 120.00393 * 359.97438 * 14 13 12 36 36 H 1.07995 * 120.80986 * 0.25614 * 18 17 15 37 37 H 1.08008 * 120.24915 * 179.97438 * 19 18 17 38 38 H 0.97007 * 119.99783 * 335.56103 * 24 23 22 39 39 H 0.96994 * 120.00229 * 155.54791 * 24 23 22 40 40 H 1.08999 * 109.49488 * 58.58049 * 25 12 11 41 41 H 1.08999 * 109.49435 * 178.67401 * 25 12 11 42 42 H 1.09001 * 109.58612 * 246.15914 * 26 9 7 43 43 H 1.08994 * 109.58535 * 6.44030 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0783 -1.2091 -0.1602 9 7 1.3409 -2.3792 0.2049 10 6 0.1434 -2.4214 1.0551 11 6 0.3372 -3.4990 2.1266 12 6 0.6756 -4.8298 1.4508 13 6 0.8359 -5.9162 2.5161 14 7 1.0408 -7.2123 1.8647 15 6 1.2066 -8.3226 2.6106 16 8 1.1865 -8.2484 3.8242 17 6 1.4132 -9.6263 1.9554 18 6 1.3191 -9.7473 0.5633 19 6 1.5151 -10.9931 -0.0027 20 6 1.7974 -12.0768 0.8136 21 17 2.0438 -13.6402 0.1002 22 7 1.8818 -11.9418 2.1236 23 6 1.7024 -10.7714 2.7167 24 7 1.7996 -10.6758 4.0925 25 6 1.9822 -4.6876 0.6667 26 6 1.8069 -3.6239 -0.4216 27 1 -0.4850 0.8400 -0.0004 28 1 -0.7282 -2.6635 0.4469 29 1 -0.0023 -1.4527 1.5332 30 1 -0.5809 -3.6072 2.7040 31 1 1.1526 -3.2101 2.7898 32 1 -0.1289 -5.1056 0.7689 33 1 -0.0627 -5.9569 3.1316 34 1 1.6964 -5.6851 3.1440 35 1 1.0564 -7.2715 0.8966 36 1 1.0981 -8.8883 -0.0528 37 1 1.4491 -11.1208 -1.0732 38 1 1.6440 -11.4577 4.6452 39 1 2.0235 -9.8271 4.5051 40 1 2.7819 -4.3874 1.3438 41 1 2.2350 -5.6421 0.2049 42 1 1.0710 -3.9640 -1.1502 43 1 2.7600 -3.4475 -0.9200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828677530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:05 Heat of formation + Delta-G solvation = 11.530952 kcal Electronic energy + Delta-G solvation = -26336.165421 eV Core-core repulsion = 22442.350387 eV Total energy + Delta-G solvation = -3893.815034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.10070 -39.36101 -37.87108 -37.09032 -35.52776 -34.59647 -33.32337 -32.56364 -30.85706 -29.94943 -29.57402 -26.96071 -24.92800 -24.00514 -23.21779 -22.29649 -21.20759 -20.86453 -19.20926 -18.31541 -17.98028 -17.70698 -16.78762 -16.28274 -15.70050 -15.50452 -15.19700 -14.91989 -14.72136 -14.44972 -14.01937 -13.76302 -13.60611 -13.49457 -13.18862 -13.10127 -12.47520 -12.37804 -12.34546 -11.92562 -11.72555 -11.38367 -11.00099 -10.97278 -10.76626 -10.58155 -10.47002 -10.28979 -10.24834 -10.16243 -10.00477 -9.87336 -9.60289 -9.48966 -9.17659 -8.51228 -8.33987 -6.64827 -5.81233 -3.29336 0.20723 0.89286 1.31509 2.54695 2.97870 3.27027 3.34752 3.41666 3.42248 3.43341 4.15174 4.39940 4.46049 4.48685 4.65299 4.92043 5.04654 5.16023 5.30931 5.32652 5.39647 5.52083 5.55488 5.79267 5.82914 5.87633 5.97845 6.06958 6.27080 6.28340 6.39666 6.55998 6.64086 6.71637 6.77238 6.88030 6.93604 7.03187 7.29383 7.36880 7.67248 7.71074 7.76096 8.02806 8.45329 9.19978 9.81408 10.39037 11.26697 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.002036 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.710861 B =13748.817147 C =14449.494098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.063 0.937 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.091 4.091 13 C 0.123 3.877 14 N -0.715 5.715 15 C 0.571 3.429 16 O -0.547 6.547 17 C -0.254 4.254 18 C 0.012 3.988 19 C -0.221 4.221 20 C 0.250 3.750 21 Cl -0.027 7.027 22 N -0.544 5.544 23 C 0.473 3.527 24 N -0.826 5.826 25 C -0.127 4.127 26 C 0.145 3.855 27 H 0.254 0.746 28 H 0.017 0.983 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.400 0.600 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.402 0.598 39 H 0.425 0.575 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.016 0.984 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 -23.461 1.998 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.316 5.316 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.110 4.110 13 C 0.000 4.000 14 N -0.366 5.366 15 C 0.359 3.641 16 O -0.427 6.427 17 C -0.265 4.265 18 C -0.014 4.014 19 C -0.244 4.244 20 C 0.082 3.918 21 Cl 0.002 6.998 22 N -0.265 5.265 23 C 0.232 3.768 24 N -0.376 5.376 25 C -0.167 4.167 26 C 0.019 3.981 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.236 0.764 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.232 0.768 39 H 0.266 0.734 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.687 -23.988 3.347 24.279 hybrid contribution 0.281 1.259 -0.739 1.487 sum 1.969 -22.729 2.608 22.962 Atomic orbital electron populations 1.69959 1.05251 1.25486 1.54335 1.25167 0.95437 0.98409 1.00531 0.86269 0.79068 0.83529 0.77714 1.21350 1.21566 1.20477 1.19164 0.90699 0.83898 1.44414 0.91903 1.44011 1.30887 1.03594 1.53064 1.20793 0.87954 0.97025 0.89644 1.22199 1.00126 0.95125 0.99863 1.21329 0.98678 0.94725 0.96235 1.21658 1.01694 0.80741 0.95883 1.45952 1.72708 1.07569 1.10333 1.17724 0.76454 0.83306 0.86655 1.90573 1.52450 1.86074 1.13576 1.20393 1.16254 0.95161 0.94666 1.21569 0.89540 0.97430 0.92851 1.21467 1.09818 0.91488 1.01669 1.21526 0.93528 0.87766 0.88985 1.98427 1.94411 1.26230 1.80778 1.66555 1.22561 1.26179 1.11156 1.17862 0.86232 0.86428 0.86301 1.42734 1.75765 1.17244 1.01828 1.22085 0.96599 0.98642 0.99357 1.20894 0.97611 0.87204 0.92434 0.93585 0.96495 0.89108 0.93069 0.92414 0.91258 0.91484 0.91313 0.76436 0.83353 0.83198 0.76816 0.73394 0.92137 0.93599 0.96609 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.68 10.99 55.49 0.61 -25.07 16 2 C 0.00 0.08 5.07 -17.43 -0.09 -0.01 16 3 Si 0.90 21.31 29.56 -169.99 -5.03 16.28 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -6.73 9.59 -15.06 -0.14 -6.88 16 8 H 0.06 1.66 7.85 -52.48 -0.41 1.24 16 9 N -0.59 -14.22 2.99 -172.32 -0.51 -14.74 16 10 C 0.17 3.90 5.25 -3.71 -0.02 3.88 16 11 C -0.13 -2.34 5.36 -26.61 -0.14 -2.49 16 12 C -0.09 -1.32 2.19 -90.58 -0.20 -1.52 16 13 C 0.12 1.58 5.06 -4.04 -0.02 1.56 16 14 N -0.72 -7.76 5.22 -61.40 -0.32 -8.08 16 15 C 0.57 6.83 7.74 -12.54 -0.10 6.73 16 16 O -0.55 -7.81 13.84 5.27 0.07 -7.73 16 17 C -0.25 -2.64 5.91 -104.65 -0.62 -3.26 16 18 C 0.01 0.10 9.62 -38.91 -0.37 -0.28 16 19 C -0.22 -1.70 9.84 -39.46 -0.39 -2.09 16 20 C 0.25 2.40 7.27 -17.37 -0.13 2.27 16 21 Cl -0.03 -0.23 29.10 -51.86 -1.51 -1.74 16 22 N -0.54 -6.04 10.36 -9.30 -0.10 -6.13 16 23 C 0.47 5.21 7.76 -155.20 -1.20 4.01 16 24 N -0.83 -8.05 8.53 31.26 0.27 -7.78 16 25 C -0.13 -1.95 5.25 -26.61 -0.14 -2.09 16 26 C 0.15 2.82 6.52 -3.71 -0.02 2.80 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.40 3.47 5.78 -40.82 -0.24 3.23 16 36 H 0.15 0.76 6.55 -52.49 -0.34 0.42 16 37 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.40 3.14 8.95 -40.82 -0.37 2.77 16 39 H 0.43 4.44 6.11 -40.82 -0.25 4.19 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.56 7.15 -51.93 -0.37 0.19 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.05 1.03 7.93 -51.93 -0.41 0.61 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -30.76 362.24 -10.29 -41.05 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.64 Total: 5.84 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -3.59 Total: 2.65 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.06 Total: -61.80 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.07 Total: -7.73 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.51 Total: -1.74 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.76 -10.29 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828677530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.577 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds