Wall clock time and date at job start Tue Mar 31 2020 20:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99706 * 2 1 4 4 H 1.48508 * 109.47094 * 269.99704 * 3 2 1 5 5 H 1.48500 * 109.47472 * 30.00027 * 3 2 1 6 6 H 1.48506 * 109.46943 * 150.00171 * 3 2 1 7 7 C 1.38808 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99979 * 170.10387 * 7 2 1 9 9 N 1.36940 * 120.00210 * 350.10398 * 7 2 1 10 10 C 1.46924 * 120.62843 * 328.76219 * 9 7 2 11 11 C 1.53199 * 108.77560 * 233.62731 * 10 9 7 12 12 C 1.53043 * 109.31197 * 305.36917 * 11 10 9 13 13 C 1.53001 * 109.45669 * 181.38442 * 12 11 10 14 14 N 1.46499 * 109.46619 * 174.97118 * 13 12 11 15 15 C 1.34782 * 119.99608 * 180.02562 * 14 13 12 16 16 O 1.21607 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.47372 * 119.99736 * 180.02562 * 15 14 13 18 18 C 1.40044 * 120.59275 * 354.17913 * 17 15 14 19 19 C 1.38232 * 118.38035 * 180.30202 * 18 17 15 20 20 C 1.38579 * 119.50209 * 359.95391 * 19 18 17 21 21 Cl 1.73605 * 119.41170 * 180.02562 * 20 19 18 22 22 N 1.31964 * 121.18201 * 0.04641 * 20 19 18 23 23 C 1.32422 * 121.75963 * 359.97438 * 22 20 19 24 24 N 1.38258 * 119.82026 * 179.97438 * 23 22 20 25 25 C 1.53039 * 109.52815 * 61.36754 * 12 11 10 26 26 C 1.46929 * 120.63185 * 148.78270 * 9 7 2 27 27 H 0.96993 * 120.00391 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.58866 * 113.84210 * 10 9 7 29 29 H 1.09002 * 109.70761 * 353.48245 * 10 9 7 30 30 H 1.08995 * 109.50070 * 185.41208 * 11 10 9 31 31 H 1.09003 * 109.49516 * 65.31965 * 11 10 9 32 32 H 1.09003 * 109.45682 * 301.35641 * 12 11 10 33 33 H 1.09001 * 109.47239 * 54.97510 * 13 12 11 34 34 H 1.09000 * 109.47032 * 294.96682 * 13 12 11 35 35 H 0.97005 * 120.00393 * 359.97438 * 14 13 12 36 36 H 1.07995 * 120.80986 * 0.25614 * 18 17 15 37 37 H 1.08008 * 120.24915 * 179.97438 * 19 18 17 38 38 H 0.97007 * 119.99783 * 335.56103 * 24 23 22 39 39 H 0.96994 * 120.00229 * 155.54791 * 24 23 22 40 40 H 1.08999 * 109.49488 * 58.58049 * 25 12 11 41 41 H 1.08999 * 109.49435 * 178.67401 * 25 12 11 42 42 H 1.09001 * 109.58612 * 246.15914 * 26 9 7 43 43 H 1.08994 * 109.58535 * 6.44030 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0783 -1.2091 -0.1602 9 7 1.3409 -2.3792 0.2049 10 6 0.1434 -2.4214 1.0551 11 6 0.3372 -3.4990 2.1266 12 6 0.6756 -4.8298 1.4508 13 6 0.8359 -5.9162 2.5161 14 7 1.0408 -7.2123 1.8647 15 6 1.2066 -8.3226 2.6106 16 8 1.1865 -8.2484 3.8242 17 6 1.4132 -9.6263 1.9554 18 6 1.3191 -9.7473 0.5633 19 6 1.5151 -10.9931 -0.0027 20 6 1.7974 -12.0768 0.8136 21 17 2.0438 -13.6402 0.1002 22 7 1.8818 -11.9418 2.1236 23 6 1.7024 -10.7714 2.7167 24 7 1.7996 -10.6758 4.0925 25 6 1.9822 -4.6876 0.6667 26 6 1.8069 -3.6239 -0.4216 27 1 -0.4850 0.8400 -0.0004 28 1 -0.7282 -2.6635 0.4469 29 1 -0.0023 -1.4527 1.5332 30 1 -0.5809 -3.6072 2.7040 31 1 1.1526 -3.2101 2.7898 32 1 -0.1289 -5.1056 0.7689 33 1 -0.0627 -5.9569 3.1316 34 1 1.6964 -5.6851 3.1440 35 1 1.0564 -7.2715 0.8966 36 1 1.0981 -8.8883 -0.0528 37 1 1.4491 -11.1208 -1.0732 38 1 1.6440 -11.4577 4.6452 39 1 2.0235 -9.8271 4.5051 40 1 2.7819 -4.3874 1.3438 41 1 2.2350 -5.6421 0.2049 42 1 1.0710 -3.9640 -1.1502 43 1 2.7600 -3.4475 -0.9200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828677530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:04 Heat of formation + Delta-G solvation = -8.421669 kcal Electronic energy + Delta-G solvation = -26337.030631 eV Core-core repulsion = 22442.350387 eV Total energy + Delta-G solvation = -3894.680244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.86481 -40.28724 -39.23468 -37.76957 -36.61092 -35.58654 -34.52955 -33.64014 -32.41512 -31.37905 -30.51216 -28.37495 -26.11844 -25.20671 -24.03642 -23.76235 -22.62633 -21.82497 -20.68749 -19.10476 -18.73373 -18.65607 -18.40433 -17.16750 -16.86562 -16.50971 -16.31797 -15.99639 -15.67110 -15.48976 -15.32281 -15.25117 -14.93021 -14.67423 -14.31970 -13.99004 -13.88730 -13.71329 -13.41821 -13.07402 -12.94363 -12.77507 -12.56106 -12.37259 -12.25408 -11.99152 -11.81722 -11.63986 -11.57980 -11.33460 -11.14027 -11.07602 -10.88008 -10.66500 -10.52018 -10.12608 -9.04890 -8.58242 -7.84305 -5.34598 -0.50833 0.25044 0.65238 1.47003 1.48260 1.57189 1.71715 2.09492 2.51983 2.56070 2.68332 3.31047 3.52590 3.64909 3.75580 3.84456 3.86929 3.96998 4.03923 4.11992 4.30920 4.55851 4.58616 4.71417 4.74278 4.77793 4.85157 4.90468 4.98603 5.06330 5.17052 5.26966 5.32046 5.33523 5.37741 5.48202 5.60189 5.69041 5.85302 6.14000 6.34994 6.44868 6.48139 6.97223 7.19209 7.19734 7.91287 8.41865 9.20779 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.002036 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.710861 B =13748.817147 C =14449.494098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.260 4.260 8 H 0.063 0.937 9 N -0.613 5.613 10 C 0.177 3.823 11 C -0.123 4.123 12 C -0.078 4.078 13 C 0.137 3.863 14 N -0.705 5.705 15 C 0.571 3.429 16 O -0.575 6.575 17 C -0.267 4.267 18 C 0.023 3.977 19 C -0.212 4.212 20 C 0.235 3.765 21 Cl -0.022 7.022 22 N -0.565 5.565 23 C 0.457 3.543 24 N -0.826 5.826 25 C -0.115 4.115 26 C 0.139 3.861 27 H 0.249 0.751 28 H -0.002 1.002 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.413 0.587 36 H 0.181 0.819 37 H 0.179 0.821 38 H 0.408 0.592 39 H 0.422 0.578 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.020 0.980 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 -24.991 1.013 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.390 4.390 8 H 0.081 0.919 9 N -0.337 5.337 10 C 0.051 3.949 11 C -0.163 4.163 12 C -0.097 4.097 13 C 0.014 3.986 14 N -0.356 5.356 15 C 0.360 3.640 16 O -0.456 6.456 17 C -0.278 4.278 18 C -0.003 4.003 19 C -0.235 4.235 20 C 0.068 3.932 21 Cl 0.007 6.993 22 N -0.286 5.286 23 C 0.216 3.784 24 N -0.376 5.376 25 C -0.154 4.154 26 C 0.014 3.986 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.251 0.749 36 H 0.198 0.802 37 H 0.197 0.803 38 H 0.238 0.762 39 H 0.262 0.738 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.038 0.962 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.306 -25.564 2.336 25.774 hybrid contribution 0.103 1.655 -0.490 1.729 sum 2.409 -23.910 1.845 24.101 Atomic orbital electron populations 1.70122 1.06525 1.25669 1.55896 1.25883 0.96202 1.01425 1.01149 0.85301 0.78011 0.79730 0.77548 1.21106 1.22017 1.19652 1.19478 0.91002 0.85293 1.43257 0.91942 1.44301 1.30940 1.04422 1.54071 1.20580 0.87157 0.96847 0.90289 1.21989 1.00774 0.95227 0.98267 1.21157 0.98615 0.93477 0.96492 1.21320 1.01377 0.80948 0.94982 1.45742 1.72445 1.06524 1.10933 1.17930 0.75858 0.83870 0.86349 1.90568 1.53660 1.86520 1.14900 1.20342 1.17616 0.94057 0.95786 1.21935 0.87881 0.98565 0.91933 1.21804 1.08185 0.90664 1.02898 1.21888 0.93695 0.88655 0.88941 1.98427 1.94368 1.26048 1.80485 1.66532 1.23456 1.26437 1.12160 1.18075 0.86836 0.86834 0.86687 1.42713 1.75741 1.17300 1.01830 1.21941 0.96542 0.98976 0.97920 1.21091 0.97279 0.86478 0.93768 0.94182 0.98385 0.93010 0.91344 0.93272 0.90220 0.91578 0.92145 0.74877 0.80151 0.80320 0.76163 0.73816 0.93243 0.89452 0.96189 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.50 10.99 21.65 0.24 -54.26 16 2 C -0.05 -2.83 5.07 84.86 0.43 -2.40 16 3 Si 0.97 44.38 29.56 68.60 2.03 46.40 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.26 -13.99 9.59 84.03 0.81 -13.19 16 8 H 0.06 3.29 7.85 -2.91 -0.02 3.27 16 9 N -0.61 -29.50 2.99 -699.09 -2.09 -31.59 16 10 C 0.18 8.16 5.25 86.37 0.45 8.61 16 11 C -0.12 -4.21 5.36 30.68 0.16 -4.05 16 12 C -0.08 -2.08 2.19 -10.77 -0.02 -2.10 16 13 C 0.14 3.15 5.06 86.38 0.44 3.58 16 14 N -0.71 -12.93 5.22 -466.42 -2.44 -15.37 16 15 C 0.57 12.38 7.74 86.65 0.67 13.05 16 16 O -0.57 -15.71 13.84 -4.05 -0.06 -15.76 16 17 C -0.27 -4.94 5.91 -19.88 -0.12 -5.05 16 18 C 0.02 0.27 9.62 22.71 0.22 0.49 16 19 C -0.21 -2.55 9.84 22.35 0.22 -2.33 16 20 C 0.24 4.04 7.27 84.75 0.62 4.66 16 21 Cl -0.02 -0.33 29.10 -2.72 -0.08 -0.41 16 22 N -0.56 -11.86 10.36 -183.35 -1.90 -13.75 16 23 C 0.46 9.53 7.76 133.65 1.04 10.57 16 24 N -0.83 -15.79 8.53 -55.00 -0.47 -16.26 16 25 C -0.11 -3.18 5.25 30.67 0.16 -3.01 16 26 C 0.14 5.19 6.52 86.36 0.56 5.75 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.32 16 28 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.05 2.78 6.07 -2.39 -0.01 2.76 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.41 5.25 5.78 -92.70 -0.54 4.72 16 36 H 0.18 0.90 6.55 -2.91 -0.02 0.88 16 37 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.41 6.35 8.95 -92.70 -0.83 5.52 16 39 H 0.42 8.72 6.11 -92.71 -0.57 8.16 16 40 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.09 1.73 7.15 -2.39 -0.02 1.71 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 Total: -1.00 -68.51 362.24 0.02 -68.49 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.85 Total: 17.94 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 5.64 Total: 14.58 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -6.65 Total: -131.23 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.06 Total: -15.76 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -68.51 0.02 -68.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828677530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.067 kcal (2) G-P(sol) polarization free energy of solvation -68.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds