Wall clock time and date at job start Tue Mar 31 2020 20:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99908 * 2 1 4 4 H 1.48509 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47020 * 299.99256 * 3 2 1 6 6 H 1.48502 * 109.47368 * 59.99560 * 3 2 1 7 7 C 1.37877 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00546 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99893 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47200 * 179.97438 * 9 7 2 11 11 C 1.46955 * 111.00311 * 170.00029 * 10 9 7 12 12 C 1.53048 * 109.36636 * 183.18599 * 11 10 9 13 13 N 1.46953 * 109.36890 * 301.59672 * 12 11 10 14 14 C 1.46897 * 111.00565 * 183.18851 * 13 12 11 15 15 C 1.50693 * 109.47215 * 170.00211 * 14 13 12 16 16 O 1.21292 * 120.00491 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99952 * 180.02562 * 15 14 13 18 18 C 1.40003 * 119.99854 * 184.67723 * 17 15 14 19 19 C 1.39297 * 120.47430 * 325.01307 * 18 17 15 20 20 C 1.38463 * 118.38195 * 179.77856 * 19 18 17 21 21 C 1.38428 * 119.21913 * 0.48772 * 20 19 18 22 22 Cl 1.73598 * 119.55890 * 179.77231 * 21 20 19 23 23 N 1.31940 * 120.88433 * 359.50415 * 21 20 19 24 24 C 1.31851 * 121.77774 * 0.24658 * 23 21 20 25 25 C 1.46966 * 110.87827 * 59.32004 * 13 12 11 26 26 C 1.46963 * 111.00138 * 293.80094 * 10 9 7 27 27 H 0.96999 * 120.00096 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47171 * 59.99562 * 9 7 2 29 29 H 1.09006 * 109.46748 * 299.99462 * 9 7 2 30 30 H 1.08996 * 109.48659 * 63.21721 * 11 10 9 31 31 H 1.08998 * 109.50452 * 303.16698 * 11 10 9 32 32 H 1.09008 * 109.49005 * 181.62601 * 12 11 10 33 33 H 1.09006 * 109.48879 * 61.56469 * 12 11 10 34 34 H 1.09001 * 109.47001 * 49.99902 * 14 13 12 35 35 H 1.09006 * 109.47065 * 289.99953 * 14 13 12 36 36 H 0.96996 * 120.00143 * 4.67000 * 17 15 14 37 37 H 1.08000 * 120.80956 * 0.02683 * 19 18 17 38 38 H 1.07995 * 120.39266 * 180.24255 * 20 19 18 39 39 H 1.08006 * 119.65983 * 180.02562 * 24 23 21 40 40 H 1.08996 * 109.48654 * 60.65016 * 25 13 12 41 41 H 1.08995 * 109.48662 * 180.72008 * 25 13 12 42 42 H 1.09006 * 109.48453 * 296.77856 * 26 10 9 43 43 H 1.08996 * 109.48845 * 56.83657 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5210 -4.8940 0.2388 12 6 2.5565 -6.0187 0.3103 13 7 3.3195 -6.0593 -0.9449 14 6 4.2741 -7.1758 -0.9450 15 6 4.8580 -7.3373 -2.3248 16 8 4.5127 -6.5957 -3.2202 17 7 5.7634 -8.3066 -2.5641 18 6 6.3787 -8.3955 -3.8186 19 6 5.6725 -8.0760 -4.9760 20 6 6.3249 -8.1747 -6.1933 21 6 7.6438 -8.5941 -6.2212 22 17 8.4683 -8.7267 -7.7431 23 7 8.2842 -8.8895 -5.1061 24 6 7.7008 -8.8038 -3.9268 25 6 4.0042 -4.7809 -1.1832 26 6 2.9687 -3.6562 -1.2548 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 0.8254 -5.0915 -0.5768 31 1 0.9731 -4.8436 1.1797 32 1 2.0486 -6.9718 0.4582 33 1 3.2357 -5.8353 1.1430 34 1 3.7601 -8.0933 -0.6583 35 1 5.0740 -6.9699 -0.2338 36 1 5.9888 -8.9426 -1.8673 37 1 4.6426 -7.7551 -4.9248 38 1 5.8096 -7.9311 -7.1107 39 1 8.2576 -9.0536 -3.0357 40 1 4.6998 -4.5835 -0.3676 41 1 4.5517 -4.8316 -2.1244 42 1 2.2895 -3.8397 -2.0874 43 1 3.4765 -2.7032 -1.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851873333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:38 Heat of formation + Delta-G solvation = 21.587091 kcal Electronic energy + Delta-G solvation = -26163.664078 eV Core-core repulsion = 22270.285111 eV Total energy + Delta-G solvation = -3893.378967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30150 -39.86053 -38.40002 -36.99179 -35.47773 -34.93302 -32.78801 -32.48157 -30.73582 -30.44694 -28.94497 -26.63704 -24.58481 -24.33159 -23.27819 -23.07657 -21.42616 -20.85097 -19.24297 -18.48584 -17.64891 -17.51107 -16.67541 -16.30682 -15.76032 -15.70611 -14.98381 -14.81083 -14.62103 -14.51780 -14.42314 -14.16319 -13.69155 -13.57754 -13.26114 -13.14590 -12.92075 -12.40032 -12.08528 -12.06136 -11.73914 -11.65764 -11.20173 -11.11140 -10.88060 -10.78378 -10.67266 -10.56634 -10.33113 -10.27698 -10.22093 -9.85620 -9.58587 -9.16612 -8.72493 -8.43831 -8.26919 -7.23100 -6.02180 -4.03395 0.39957 0.74544 1.45381 2.20023 2.44450 3.20958 3.31402 3.38716 3.43490 3.91944 4.01624 4.26113 4.33933 4.42986 4.48169 4.67425 4.89833 4.93188 5.01730 5.08451 5.27869 5.29493 5.33599 5.50193 5.57423 5.67471 5.69689 5.78007 5.88591 6.10013 6.15522 6.21357 6.39678 6.56908 6.74088 6.76290 7.08417 7.09090 7.23231 7.33462 7.37870 7.73738 7.80782 8.09166 8.20688 8.55580 9.04310 9.60836 11.08759 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.002093 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.895025 B =13374.342152 C =14584.265102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.540 5.540 11 C 0.056 3.944 12 C 0.063 3.937 13 N -0.523 5.523 14 C 0.039 3.961 15 C 0.514 3.486 16 O -0.490 6.490 17 N -0.674 5.674 18 C 0.106 3.894 19 C -0.067 4.067 20 C -0.131 4.131 21 C 0.153 3.847 22 Cl -0.033 7.033 23 N -0.460 5.460 24 C 0.094 3.906 25 C 0.053 3.947 26 C 0.070 3.930 27 H 0.260 0.740 28 H -0.008 1.008 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.415 0.585 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.167 0.833 40 H 0.034 0.966 41 H 0.085 0.915 42 H 0.031 0.969 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.421 -23.301 -6.770 27.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.265 5.265 11 C -0.073 4.073 12 C -0.065 4.065 13 N -0.249 5.249 14 C -0.092 4.092 15 C 0.302 3.698 16 O -0.361 6.361 17 N -0.322 5.322 18 C 0.009 3.991 19 C -0.095 4.095 20 C -0.152 4.152 21 C -0.012 4.012 22 Cl -0.005 7.005 23 N -0.170 5.170 24 C -0.066 4.066 25 C -0.074 4.074 26 C -0.058 4.058 27 H 0.070 0.930 28 H 0.010 0.990 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.251 0.749 37 H 0.180 0.820 38 H 0.167 0.833 39 H 0.184 0.816 40 H 0.053 0.947 41 H 0.104 0.896 42 H 0.049 0.951 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.895 -22.848 -7.537 27.783 hybrid contribution -0.253 0.847 0.306 0.935 sum 13.642 -22.001 -7.231 26.878 Atomic orbital electron populations 1.69967 1.06050 1.26643 1.51137 1.24994 0.94871 0.99325 0.95490 0.86453 0.80064 0.83469 0.77495 1.19692 1.21094 1.21040 1.21187 0.93467 0.89948 1.49858 0.91905 1.19707 0.90060 0.87307 0.96132 1.62312 1.28105 1.02683 1.33402 1.22047 0.94641 0.89950 1.00631 1.22209 0.96131 0.98963 0.89203 1.61920 1.24776 1.02910 1.35266 1.21908 0.96754 0.98253 0.92308 1.21059 0.77938 0.79124 0.91691 1.90725 1.57041 1.42584 1.45792 1.43550 1.42918 1.33077 1.12661 1.18855 0.92919 1.01026 0.86326 1.21843 1.01793 0.96112 0.89721 1.21837 0.93375 1.00125 0.99874 1.21612 0.90350 1.00704 0.88524 1.98408 1.79934 1.96354 1.25756 1.66960 1.37878 1.14757 0.97428 1.22480 0.89925 0.99237 0.95003 1.22438 0.96284 0.87842 1.00838 1.21943 0.95414 0.97274 0.91192 0.92992 0.99017 0.95209 0.95010 0.90819 0.90997 0.94007 0.87557 0.91415 0.74874 0.82009 0.83256 0.81558 0.94728 0.89637 0.95106 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.28 8.47 -34.44 -0.29 -14.57 16 8 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.07 4.72 -4.98 -0.02 5.04 16 10 N -0.54 -11.69 4.70 -235.91 -1.11 -12.80 16 11 C 0.06 1.00 5.61 -3.77 -0.02 0.98 16 12 C 0.06 0.85 5.61 -3.77 -0.02 0.83 16 13 N -0.52 -7.24 4.45 -235.91 -1.05 -8.29 16 14 C 0.04 0.36 5.45 -4.98 -0.03 0.33 16 15 C 0.51 5.13 7.39 -10.99 -0.08 5.05 16 16 O -0.49 -6.91 11.82 5.55 0.07 -6.85 16 17 N -0.67 -4.48 5.35 -9.76 -0.05 -4.54 16 18 C 0.11 0.89 6.32 -83.52 -0.53 0.36 16 19 C -0.07 -0.64 8.81 -39.10 -0.34 -0.98 16 20 C -0.13 -1.17 9.87 -39.43 -0.39 -1.56 16 21 C 0.15 1.51 7.27 -17.44 -0.13 1.38 16 22 Cl -0.03 -0.30 29.10 -51.86 -1.51 -1.81 16 23 N -0.46 -4.67 10.33 -10.20 -0.11 -4.77 16 24 C 0.09 0.74 11.12 -17.34 -0.19 0.55 16 25 C 0.05 0.87 5.26 -3.76 -0.02 0.85 16 26 C 0.07 1.43 5.43 -3.76 -0.02 1.41 16 27 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 28 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 29 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 32 H 0.07 0.78 8.07 -51.92 -0.42 0.36 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 0.67 8.03 -51.93 -0.42 0.25 16 35 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.41 1.16 8.83 -40.82 -0.36 0.80 16 37 H 0.16 1.71 6.32 -52.49 -0.33 1.38 16 38 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.41 5.85 -51.93 -0.30 1.10 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.88 6.79 -51.93 -0.35 1.52 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -33.95 367.02 -10.61 -44.56 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.91 Total: -2.81 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.18 Total: 1.13 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -1.58 Total: -56.50 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: 0.07 Total: -6.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.51 Total: -1.81 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.95 -10.61 -44.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851873333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.146 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds