Wall clock time and date at job start Tue Mar 31 2020 20:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99908 * 2 1 4 4 H 1.48509 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47020 * 299.99256 * 3 2 1 6 6 H 1.48502 * 109.47368 * 59.99560 * 3 2 1 7 7 C 1.37877 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00546 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99893 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47200 * 179.97438 * 9 7 2 11 11 C 1.46955 * 111.00311 * 170.00029 * 10 9 7 12 12 C 1.53048 * 109.36636 * 183.18599 * 11 10 9 13 13 N 1.46953 * 109.36890 * 301.59672 * 12 11 10 14 14 C 1.46897 * 111.00565 * 183.18851 * 13 12 11 15 15 C 1.50693 * 109.47215 * 170.00211 * 14 13 12 16 16 O 1.21292 * 120.00491 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99952 * 180.02562 * 15 14 13 18 18 C 1.40003 * 119.99854 * 184.67723 * 17 15 14 19 19 C 1.39297 * 120.47430 * 325.01307 * 18 17 15 20 20 C 1.38463 * 118.38195 * 179.77856 * 19 18 17 21 21 C 1.38428 * 119.21913 * 0.48772 * 20 19 18 22 22 Cl 1.73598 * 119.55890 * 179.77231 * 21 20 19 23 23 N 1.31940 * 120.88433 * 359.50415 * 21 20 19 24 24 C 1.31851 * 121.77774 * 0.24658 * 23 21 20 25 25 C 1.46966 * 110.87827 * 59.32004 * 13 12 11 26 26 C 1.46963 * 111.00138 * 293.80094 * 10 9 7 27 27 H 0.96999 * 120.00096 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47171 * 59.99562 * 9 7 2 29 29 H 1.09006 * 109.46748 * 299.99462 * 9 7 2 30 30 H 1.08996 * 109.48659 * 63.21721 * 11 10 9 31 31 H 1.08998 * 109.50452 * 303.16698 * 11 10 9 32 32 H 1.09008 * 109.49005 * 181.62601 * 12 11 10 33 33 H 1.09006 * 109.48879 * 61.56469 * 12 11 10 34 34 H 1.09001 * 109.47001 * 49.99902 * 14 13 12 35 35 H 1.09006 * 109.47065 * 289.99953 * 14 13 12 36 36 H 0.96996 * 120.00143 * 4.67000 * 17 15 14 37 37 H 1.08000 * 120.80956 * 0.02683 * 19 18 17 38 38 H 1.07995 * 120.39266 * 180.24255 * 20 19 18 39 39 H 1.08006 * 119.65983 * 180.02562 * 24 23 21 40 40 H 1.08996 * 109.48654 * 60.65016 * 25 13 12 41 41 H 1.08995 * 109.48662 * 180.72008 * 25 13 12 42 42 H 1.09006 * 109.48453 * 296.77856 * 26 10 9 43 43 H 1.08996 * 109.48845 * 56.83657 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5210 -4.8940 0.2388 12 6 2.5565 -6.0187 0.3103 13 7 3.3195 -6.0593 -0.9449 14 6 4.2741 -7.1758 -0.9450 15 6 4.8580 -7.3373 -2.3248 16 8 4.5127 -6.5957 -3.2202 17 7 5.7634 -8.3066 -2.5641 18 6 6.3787 -8.3955 -3.8186 19 6 5.6725 -8.0760 -4.9760 20 6 6.3249 -8.1747 -6.1933 21 6 7.6438 -8.5941 -6.2212 22 17 8.4683 -8.7267 -7.7431 23 7 8.2842 -8.8895 -5.1061 24 6 7.7008 -8.8038 -3.9268 25 6 4.0042 -4.7809 -1.1832 26 6 2.9687 -3.6562 -1.2548 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 0.8254 -5.0915 -0.5768 31 1 0.9731 -4.8436 1.1797 32 1 2.0486 -6.9718 0.4582 33 1 3.2357 -5.8353 1.1430 34 1 3.7601 -8.0933 -0.6583 35 1 5.0740 -6.9699 -0.2338 36 1 5.9888 -8.9426 -1.8673 37 1 4.6426 -7.7551 -4.9248 38 1 5.8096 -7.9311 -7.1107 39 1 8.2576 -9.0536 -3.0357 40 1 4.6998 -4.5835 -0.3676 41 1 4.5517 -4.8316 -2.1244 42 1 2.2895 -3.8397 -2.0874 43 1 3.4765 -2.7032 -1.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851873333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:37 Heat of formation + Delta-G solvation = -4.708223 kcal Electronic energy + Delta-G solvation = -26164.804329 eV Core-core repulsion = 22270.285111 eV Total energy + Delta-G solvation = -3894.519217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.00514 -40.71767 -39.64265 -37.70511 -36.60547 -36.02603 -34.55824 -33.43947 -31.82749 -31.58209 -30.25982 -28.20085 -25.91968 -25.08196 -24.54178 -24.11770 -23.18590 -21.59727 -20.65861 -19.16234 -18.53211 -18.32638 -18.21383 -17.38264 -17.14235 -16.57761 -16.37499 -15.84328 -15.80820 -15.56544 -15.44319 -15.37349 -15.09536 -14.79554 -14.42044 -14.29659 -13.95566 -13.64469 -13.45132 -13.15111 -12.97085 -12.82159 -12.70556 -12.43314 -12.37006 -12.28471 -12.16728 -11.98442 -11.77294 -11.57512 -11.18562 -11.14028 -10.92082 -10.64097 -10.47306 -9.39331 -9.30277 -9.04545 -8.22382 -6.32604 -0.27531 0.06707 0.76670 1.39548 1.39842 1.48380 1.53660 1.78875 2.38776 2.55258 2.94659 3.09722 3.30235 3.40599 3.57432 3.73296 3.81962 3.96232 4.00906 4.21380 4.23279 4.36703 4.40216 4.51107 4.53398 4.56775 4.64877 4.71216 4.87700 4.91322 4.96931 5.03043 5.03623 5.10099 5.20657 5.27639 5.54213 5.62339 5.92485 5.98351 6.05127 6.29654 6.38054 6.57364 6.62323 6.83247 7.08421 7.37063 8.89104 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.002093 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.895025 B =13374.342152 C =14584.265102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.207 3.793 10 N -0.541 5.541 11 C 0.049 3.951 12 C 0.074 3.926 13 N -0.542 5.542 14 C 0.042 3.958 15 C 0.514 3.486 16 O -0.539 6.539 17 N -0.652 5.652 18 C 0.104 3.896 19 C -0.081 4.081 20 C -0.133 4.133 21 C 0.139 3.861 22 Cl -0.033 7.033 23 N -0.480 5.480 24 C 0.102 3.898 25 C 0.072 3.928 26 C 0.073 3.927 27 H 0.265 0.735 28 H -0.044 1.044 29 H 0.008 0.992 30 H 0.016 0.984 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.146 0.854 35 H 0.096 0.904 36 H 0.436 0.564 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.202 0.798 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.006 0.994 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.468 -25.032 -5.339 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.081 3.919 10 N -0.266 5.266 11 C -0.079 4.079 12 C -0.053 4.053 13 N -0.268 5.268 14 C -0.088 4.088 15 C 0.303 3.697 16 O -0.414 6.414 17 N -0.301 5.301 18 C 0.006 3.994 19 C -0.109 4.109 20 C -0.154 4.154 21 C -0.025 4.025 22 Cl -0.005 7.005 23 N -0.191 5.191 24 C -0.059 4.059 25 C -0.056 4.056 26 C -0.056 4.056 27 H 0.073 0.927 28 H -0.027 1.027 29 H 0.026 0.974 30 H 0.034 0.966 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.164 0.836 35 H 0.114 0.886 36 H 0.277 0.723 37 H 0.167 0.833 38 H 0.179 0.821 39 H 0.219 0.781 40 H 0.059 0.941 41 H 0.102 0.898 42 H 0.024 0.976 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.976 -24.651 -6.086 29.998 hybrid contribution -0.926 1.301 -0.150 1.604 sum 15.050 -23.349 -6.235 28.471 Atomic orbital electron populations 1.70092 1.07732 1.27866 1.51802 1.25943 0.95795 1.03291 0.94803 0.85316 0.78927 0.78481 0.77781 1.18747 1.20527 1.20093 1.21471 0.93528 0.91090 1.49972 0.92028 1.19366 0.90131 0.89125 0.93291 1.62256 1.27189 1.03290 1.33891 1.22231 0.96004 0.89620 1.00073 1.22140 0.95235 0.98595 0.89317 1.61758 1.26393 1.02935 1.35709 1.22068 0.97008 0.97667 0.92096 1.21318 0.77848 0.78909 0.91650 1.90731 1.58859 1.44633 1.47196 1.43294 1.41603 1.32594 1.12583 1.18924 0.93212 1.00723 0.86523 1.21844 1.01512 0.96810 0.90692 1.21947 0.93239 0.99884 1.00352 1.21740 0.90685 1.01344 0.88733 1.98401 1.79913 1.96379 1.25781 1.67000 1.38535 1.15465 0.98112 1.22989 0.89727 0.97758 0.95378 1.22107 0.94596 0.87819 1.01035 1.21881 0.95662 0.98280 0.89727 0.92653 1.02680 0.97374 0.96598 0.90470 0.86993 0.93016 0.83630 0.88592 0.72276 0.83336 0.82101 0.78108 0.94115 0.89846 0.97590 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 3 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.52 -30.40 8.47 25.60 0.22 -30.18 16 8 H 0.06 3.52 7.13 -2.91 -0.02 3.50 16 9 C 0.21 11.45 4.72 85.56 0.40 11.86 16 10 N -0.54 -24.09 4.70 -900.28 -4.23 -28.32 16 11 C 0.05 1.74 5.61 86.31 0.48 2.23 16 12 C 0.07 1.79 5.61 86.31 0.48 2.28 16 13 N -0.54 -13.65 4.45 -900.28 -4.00 -17.65 16 14 C 0.04 0.57 5.45 85.56 0.47 1.04 16 15 C 0.51 8.85 7.39 87.65 0.65 9.50 16 16 O -0.54 -14.78 11.82 -3.07 -0.04 -14.82 16 17 N -0.65 -6.49 5.35 -303.17 -1.62 -8.11 16 18 C 0.10 1.52 6.32 38.22 0.24 1.76 16 19 C -0.08 -1.50 8.81 22.58 0.20 -1.30 16 20 C -0.13 -2.33 9.87 22.37 0.22 -2.11 16 21 C 0.14 2.65 7.27 84.72 0.62 3.26 16 22 Cl -0.03 -0.59 29.10 -2.72 -0.08 -0.67 16 23 N -0.48 -9.02 10.33 -186.20 -1.92 -10.94 16 24 C 0.10 1.34 11.12 84.82 0.94 2.29 16 25 C 0.07 2.29 5.26 86.31 0.45 2.74 16 26 C 0.07 3.08 5.43 86.31 0.47 3.55 16 27 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 28 H -0.04 -2.72 8.12 -2.39 -0.02 -2.74 16 29 H 0.01 0.48 8.03 -2.38 -0.02 0.46 16 30 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 32 H 0.11 1.87 8.07 -2.38 -0.02 1.85 16 33 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.15 0.93 8.03 -2.39 -0.02 0.91 16 35 H 0.10 0.90 8.12 -2.38 -0.02 0.88 16 36 H 0.44 0.42 8.83 -92.71 -0.82 -0.40 16 37 H 0.15 3.20 6.32 -2.91 -0.02 3.18 16 38 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 2.71 5.85 -2.39 -0.01 2.70 16 42 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 43 H 0.06 2.83 6.79 -2.39 -0.02 2.81 16 Total: -1.00 -78.07 367.02 -3.05 -81.13 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: 0.22 Total: 1.94 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.31 Total: 7.34 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -11.49 Total: -122.06 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.04 Total: -14.82 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -78.07 -3.05 -81.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851873333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.419 kcal (2) G-P(sol) polarization free energy of solvation -78.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds